[BEGIN]

REFERENCE HAIRPIN
********************************************************************************************
ID                 : mmu-mir-503
DESCRIPTION        : mmu-mir-503 MI0003538 Mus musculus miR-503 stem-loop
CHROMOSOME         : X
SPAN               : 50407161 - 50407231
LENGTH             : 71
SEQUENCE           : TGCCCTAGCAGCGGGAACAGTACTGCAGTGAGTGTTTGGTGCCCTGGAGTATTGTTTCCACTGCCTGGGTA
OVERHANG THRESHOLD : 40%
********************************************************************************************


TARGET
******************************
CATEGORY   : MATURE
ID         : mmu-miR-503
ACCID      : MI0003538
PARENT     : mmu-mir-503
CHROMOSOME : X
START      : 50407161
STOP       : 50407231
OFFSET     : 6..28
SEQUENCE   : TAGCAGCGGGAACAGTACTGCAG
STRAND     : -
******************************


TARGET
******************************
CATEGORY   : MATURESTAR
ID         : mmu-miR-503*
ACCID      : MI0003538
PARENT     : mmu-mir-503
CHROMOSOME : X
START      : 50407161
STOP       : 50407231
OFFSET     : 47..68
SEQUENCE   : GAGTATTGTTTCCACTGCCTGG
STRAND     : -
******************************



*** MATURE ***
_______________________________________________________________________
TGCCCTAGCAGCGGGAACAGTACTGCAGTGAGTGTTTGGTGCCCTGGAGTATTGTTTCCACTGCCTGGGTA REF                  X                    50407161 - 50407231  
     TAGCAGCGGGAACAGTACTGCAG                                            MATURE               X                    50407167 - 50407259  mmu-miR-503          -                    
                                              GAGTATTGTTTCCACTGCCTGG    MATURESTAR           X                    50407208 - 50407299  mmu-miR-503*         -                    
_______________________________________________________________________

                                                                   -SEQ-              -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
.....TAGCAGCGGGAACAGTACTaCAG............................................   38321_2_0_0_0_0_2       MATURE            4        14.29            2        14.29            2        14.29                      19A3   
.....TAGCAGCGGGAACAGTACTG...............................................   36393_1_0_0_0_0_2       MATURE            3        10.71            1         7.14            2        14.29                        20   
......AGCAGCGGGAACAGTACTGCAG............................................   15291_0_0_0_0_0_2       MATURE            2         7.14            0         0.00            2        14.29                        22   
.....TAGCAGCGGGAACAGTAaTGCAG............................................    3694_1_0_0_0_0_1       MATURE            2         7.14            1         7.14            1         7.14                      17A5   
......AGCAGCGGGAACAGTACTGaAGTt..........................................    6045_0_0_0_0_0_1       MATURE            1         3.57            0         0.00            1         7.14                      19A3   
.....TAGgAGCGGGAACAGTACTGCAG............................................   22735_1_0_0_0_0_0       MATURE            1         3.57            1         7.14            0         0.00                      3G19   
.......GCAGCGGGAACAGTACTGCAt............................................   13777_1_0_0_0_0_0       MATURE            1         3.57            1         7.14            0         0.00                        20   
......AGCAGgGGGAACAGTACTGCAGa...........................................   33398_1_0_0_0_0_0       MATURE            1         3.57            1         7.14            0         0.00                      5G16   
......AGCAGCGGGAACAGTACTGCA.............................................    8627_0_0_0_0_0_1       MATURE            1         3.57            0         0.00            1         7.14                        21   
.......GCAGCGGGAACAGTACTGC..............................................   30819_1_0_0_0_0_0       MATURE            1         3.57            1         7.14            0         0.00                        19   
.....TAGCAGCGGGAACAGTAgTGCAG............................................   38193_1_0_0_0_0_0       MATURE            1         3.57            1         7.14            0         0.00                      17G5   
.........AGCGGGAACAGTACTGCAG............................................    6948_0_0_0_0_0_1       MATURE            1         3.57            0         0.00            1         7.14                        19   
.....TAGCAGCGGGAACAGTACTGCAt............................................   25125_1_0_0_0_0_0       MATURE            1         3.57            1         7.14            0         0.00                        22   
......AGCAGgGGGAACAGTACTGCAG............................................    7206_0_0_0_0_0_1       MATURE            1         3.57            0         0.00            1         7.14                      5G16   
.....TAGCAGCGGGAACAGTACaGCAG............................................   16442_1_0_0_0_0_0       MATURE            1         3.57            1         7.14            0         0.00                      18A4   
......AGCAGCGGGAACAGTAaTGCAG............................................   39885_1_0_0_0_0_0       MATURE            1         3.57            1         7.14            0         0.00                      16A5   
......AGCAGCGGGAACAGTAgTGCAG............................................   39084_0_0_0_0_0_1       MATURE            1         3.57            0         0.00            1         7.14                      16G5   
......AGCAGCGGGAACAGTACTaCAGT...........................................   24290_1_0_0_0_0_0       MATURE            1         3.57            1         7.14            0         0.00                      18A4   
.....TAGCAGCGGGAACAGTACTGCAa............................................   31968_0_0_0_0_0_1       MATURE            1         3.57            0         0.00            1         7.14                        22   
......AGCAGCGGGAACAGTACTGa..............................................   12508_0_0_0_0_0_1       MATURE            1         3.57            0         0.00            1         7.14                        19   
......AGCAGgGGGAACAGTACTGCAa............................................   36112_1_0_0_0_0_0       MATURE            1         3.57            1         7.14            0         0.00                      5G15   
                                                                                                            ----------                ----------                ----------   
                                                                                                                    28                        14                        14                                          
                                                                                                                                         (50.00)                   (50.00)                                       




*** MATURESTAR ***
_______________________________________________________________________
TGCCCTAGCAGCGGGAACAGTACTGCAGTGAGTGTTTGGTGCCCTGGAGTATTGTTTCCACTGCCTGGGTA REF                  X                    50407161 - 50407231  
     TAGCAGCGGGAACAGTACTGCAG                                            MATURE               X                    50407167 - 50407259  mmu-miR-503          -                    
                                              GAGTATTGTTTCCACTGCCTGG    MATURESTAR           X                    50407208 - 50407299  mmu-miR-503*         -                    
_______________________________________________________________________

                                                                   -SEQ-              -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
.............................................GGAGTATTGTTTCCACTcCCTGG....   31997_0_0_0_0_0_1   MATURESTAR            1        25.00            0         0.00            1        33.33                      17C5   
.............................................GGAGTATTGTTTCCACTaCCTGG....    2500_0_0_0_0_0_1   MATURESTAR            1        25.00            0         0.00            1        33.33                      17A5   
.............................................GGAGTATTGTTTCCACTGCCT......    3420_0_0_0_0_0_1   MATURESTAR            1        25.00            0         0.00            1        33.33                        21   
.............................................GGAGTATTGTTcCCACTGCCTGGa...   37507_1_0_0_0_0_0   MATURESTAR            1        25.00            1       100.00            0         0.00                     11C11   
                                                                                                            ----------                ----------                ----------   
                                                                                                                     4                         1                         3                                          
                                                                                                                                         (25.00)                   (75.00)                                       




((( SUMMARY )))

          -CAT-          -REST-           -ACT-         -TOTAL-        -TOTAL%-
     ----------      ----------      ----------      ----------      ----------
         MATURE              14              14              28          87.50%
     MATURESTAR               1               3               4          12.50%
                     ----------      ----------      ----------                
                             15              17              32                



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