[BEGIN]
REFERENCE HAIRPIN
********************************************************************************************
ID : mmu-mir-503
DESCRIPTION : mmu-mir-503 MI0003538 Mus musculus miR-503 stem-loop
CHROMOSOME : X
SPAN : 50407161 - 50407231
LENGTH : 71
SEQUENCE : TGCCCTAGCAGCGGGAACAGTACTGCAGTGAGTGTTTGGTGCCCTGGAGTATTGTTTCCACTGCCTGGGTA
OVERHANG THRESHOLD : 40%
********************************************************************************************
TARGET
******************************
CATEGORY : MATURE
ID : mmu-miR-503
ACCID : MI0003538
PARENT : mmu-mir-503
CHROMOSOME : X
START : 50407161
STOP : 50407231
OFFSET : 6..28
SEQUENCE : TAGCAGCGGGAACAGTACTGCAG
STRAND : -
******************************
TARGET
******************************
CATEGORY : MATURESTAR
ID : mmu-miR-503*
ACCID : MI0003538
PARENT : mmu-mir-503
CHROMOSOME : X
START : 50407161
STOP : 50407231
OFFSET : 47..68
SEQUENCE : GAGTATTGTTTCCACTGCCTGG
STRAND : -
******************************
*** MATURE ***
_______________________________________________________________________
TGCCCTAGCAGCGGGAACAGTACTGCAGTGAGTGTTTGGTGCCCTGGAGTATTGTTTCCACTGCCTGGGTA REF X 50407161 - 50407231
TAGCAGCGGGAACAGTACTGCAG MATURE X 50407167 - 50407259 mmu-miR-503 -
GAGTATTGTTTCCACTGCCTGG MATURESTAR X 50407208 - 50407299 mmu-miR-503* -
_______________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
.....TAGCAGCGGGAACAGTACTaCAG............................................ 38321_2_0_0_0_0_2 MATURE 4 14.29 2 14.29 2 14.29 19A3
.....TAGCAGCGGGAACAGTACTG............................................... 36393_1_0_0_0_0_2 MATURE 3 10.71 1 7.14 2 14.29 20
......AGCAGCGGGAACAGTACTGCAG............................................ 15291_0_0_0_0_0_2 MATURE 2 7.14 0 0.00 2 14.29 22
.....TAGCAGCGGGAACAGTAaTGCAG............................................ 3694_1_0_0_0_0_1 MATURE 2 7.14 1 7.14 1 7.14 17A5
......AGCAGCGGGAACAGTACTGaAGTt.......................................... 6045_0_0_0_0_0_1 MATURE 1 3.57 0 0.00 1 7.14 19A3
.....TAGgAGCGGGAACAGTACTGCAG............................................ 22735_1_0_0_0_0_0 MATURE 1 3.57 1 7.14 0 0.00 3G19
.......GCAGCGGGAACAGTACTGCAt............................................ 13777_1_0_0_0_0_0 MATURE 1 3.57 1 7.14 0 0.00 20
......AGCAGgGGGAACAGTACTGCAGa........................................... 33398_1_0_0_0_0_0 MATURE 1 3.57 1 7.14 0 0.00 5G16
......AGCAGCGGGAACAGTACTGCA............................................. 8627_0_0_0_0_0_1 MATURE 1 3.57 0 0.00 1 7.14 21
.......GCAGCGGGAACAGTACTGC.............................................. 30819_1_0_0_0_0_0 MATURE 1 3.57 1 7.14 0 0.00 19
.....TAGCAGCGGGAACAGTAgTGCAG............................................ 38193_1_0_0_0_0_0 MATURE 1 3.57 1 7.14 0 0.00 17G5
.........AGCGGGAACAGTACTGCAG............................................ 6948_0_0_0_0_0_1 MATURE 1 3.57 0 0.00 1 7.14 19
.....TAGCAGCGGGAACAGTACTGCAt............................................ 25125_1_0_0_0_0_0 MATURE 1 3.57 1 7.14 0 0.00 22
......AGCAGgGGGAACAGTACTGCAG............................................ 7206_0_0_0_0_0_1 MATURE 1 3.57 0 0.00 1 7.14 5G16
.....TAGCAGCGGGAACAGTACaGCAG............................................ 16442_1_0_0_0_0_0 MATURE 1 3.57 1 7.14 0 0.00 18A4
......AGCAGCGGGAACAGTAaTGCAG............................................ 39885_1_0_0_0_0_0 MATURE 1 3.57 1 7.14 0 0.00 16A5
......AGCAGCGGGAACAGTAgTGCAG............................................ 39084_0_0_0_0_0_1 MATURE 1 3.57 0 0.00 1 7.14 16G5
......AGCAGCGGGAACAGTACTaCAGT........................................... 24290_1_0_0_0_0_0 MATURE 1 3.57 1 7.14 0 0.00 18A4
.....TAGCAGCGGGAACAGTACTGCAa............................................ 31968_0_0_0_0_0_1 MATURE 1 3.57 0 0.00 1 7.14 22
......AGCAGCGGGAACAGTACTGa.............................................. 12508_0_0_0_0_0_1 MATURE 1 3.57 0 0.00 1 7.14 19
......AGCAGgGGGAACAGTACTGCAa............................................ 36112_1_0_0_0_0_0 MATURE 1 3.57 1 7.14 0 0.00 5G15
---------- ---------- ----------
28 14 14
(50.00) (50.00)
*** MATURESTAR ***
_______________________________________________________________________
TGCCCTAGCAGCGGGAACAGTACTGCAGTGAGTGTTTGGTGCCCTGGAGTATTGTTTCCACTGCCTGGGTA REF X 50407161 - 50407231
TAGCAGCGGGAACAGTACTGCAG MATURE X 50407167 - 50407259 mmu-miR-503 -
GAGTATTGTTTCCACTGCCTGG MATURESTAR X 50407208 - 50407299 mmu-miR-503* -
_______________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
.............................................GGAGTATTGTTTCCACTcCCTGG.... 31997_0_0_0_0_0_1 MATURESTAR 1 25.00 0 0.00 1 33.33 17C5
.............................................GGAGTATTGTTTCCACTaCCTGG.... 2500_0_0_0_0_0_1 MATURESTAR 1 25.00 0 0.00 1 33.33 17A5
.............................................GGAGTATTGTTTCCACTGCCT...... 3420_0_0_0_0_0_1 MATURESTAR 1 25.00 0 0.00 1 33.33 21
.............................................GGAGTATTGTTcCCACTGCCTGGa... 37507_1_0_0_0_0_0 MATURESTAR 1 25.00 1 100.00 0 0.00 11C11
---------- ---------- ----------
4 1 3
(25.00) (75.00)
((( SUMMARY )))
-CAT- -REST- -ACT- -TOTAL- -TOTAL%-
---------- ---------- ---------- ---------- ----------
MATURE 14 14 28 87.50%
MATURESTAR 1 3 4 12.50%
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15 17 32
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