[BEGIN]

REFERENCE HAIRPIN
**********************************************************************************************************************************
ID                 : mmu-mir-501
DESCRIPTION        : mmu-mir-501 MI0004703 Mus musculus miR-501 stem-loop
CHROMOSOME         : X
SPAN               : 6818369 - 6818477
LENGTH             : 109
SEQUENCE           : CTTCTGCTCTGCTCATCCTCTCTAATCCTTTGTCCCTGGGTGAAAATGCTATTTGTATGCAATGCACCCGGGCAAGGATTTGGGGAAGGTGAGCCTGATCTGCATGGAG
OVERHANG THRESHOLD : 40%
**********************************************************************************************************************************


TARGET
******************************
CATEGORY   : MATURE-3P
ID         : mmu-miR-501-3p
ACCID      : MI0004703
PARENT     : mmu-mir-501
CHROMOSOME : X
START      : 6818369
STOP       : 6818477
OFFSET     : 61..82
SEQUENCE   : AATGCACCCGGGCAAGGATTTG
STRAND     : -
******************************


TARGET
******************************
CATEGORY   : MATURE-5P
ID         : mmu-miR-501-5p
ACCID      : MI0004703
PARENT     : mmu-mir-501
CHROMOSOME : X
START      : 6818369
STOP       : 6818477
OFFSET     : 24..45
SEQUENCE   : AATCCTTTGTCCCTGGGTGAAA
STRAND     : -
******************************



*** MATURE-3P ***
_____________________________________________________________________________________________________________
CTTCTGCTCTGCTCATCCTCTCTAATCCTTTGTCCCTGGGTGAAAATGCTATTTGTATGCAATGCACCCGGGCAAGGATTTGGGGAAGGTGAGCCTGATCTGCATGGAG REF                  X                    6818369 - 6818477    
                                                            AATGCACCCGGGCAAGGATTTG                            MATURE-3P            X                    6818430 - 6818559    mmu-miR-501-3p       -                    
                       AATCCTTTGTCCCTGGGTGAAA                                                                 MATURE-5P            X                    6818393 - 6818522    mmu-miR-501-5p       -                    
_____________________________________________________________________________________________________________

                                                                                                         -SEQ-              -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
............................................................AATGCACCCGGGCAAGGATTTGG...........................   39984_1_0_0_0_0_4    MATURE-3P            5        16.13            1         7.14            4        23.53                        23   
............................................................AATGCACCCGGGCAAGGATTTGt...........................   34372_1_0_0_0_0_3    MATURE-3P            4        12.90            1         7.14            3        17.65                        22   
............................................................AATGCACCCGGGCAAGGATTTGa...........................   32615_1_0_0_0_0_2    MATURE-3P            3         9.68            1         7.14            2        11.76                        22   
............................................................AATGCACCCGGGCAAGGATTTa............................   42898_2_0_0_0_0_0    MATURE-3P            2         6.45            2        14.29            0         0.00                        21   
............................................................AATGCACCCGGGCAAGGAaTTGt...........................    1222_1_0_0_0_0_0    MATURE-3P            1         3.23            1         7.14            0         0.00                      18A3   
.............................................................ATGCACCCGGGtAAGGATTTGa...........................    6717_0_0_0_0_0_1    MATURE-3P            1         3.23            0         0.00            1         5.88                      11T9   
.............................................................ATGCACCCGGGCAAGGAgTTGG...........................     606_0_0_0_0_0_1    MATURE-3P            1         3.23            0         0.00            1         5.88                      17G4   
.............................................................ATGCACCCGGGCAAGGATTaGGa..........................   38991_0_0_0_0_0_1    MATURE-3P            1         3.23            0         0.00            1         5.88                      19A2   
............................................................AATGCACCCGGGCAAGGATTaGGG..........................   27214_1_0_0_0_0_0    MATURE-3P            1         3.23            1         7.14            0         0.00                      20A3   
............................................................AATGCACCCGGGCAAtGATTT.............................   18189_0_0_0_0_0_1    MATURE-3P            1         3.23            0         0.00            1         5.88                      15T5   
............................................................AATGCACCCGGGCAAGGATTTG............................   34527_1_0_0_0_0_0    MATURE-3P            1         3.23            1         7.14            0         0.00                        22   
.............................................................ATGCACCCGGGtAAGGATTTGt...........................   26441_0_0_0_0_0_1    MATURE-3P            1         3.23            0         0.00            1         5.88                      11T9   
............................................................AATGCACCCGGGtAAGGATTTGG...........................   43324_1_0_0_0_0_0    MATURE-3P            1         3.23            1         7.14            0         0.00                     12T10   
.............................................................ATGCACCCGGGCAAGGATTT.............................   43401_0_0_0_0_0_1    MATURE-3P            1         3.23            0         0.00            1         5.88                        20   
............................................................AATGCACCCGGGCAAGGATTaGG...........................    9330_1_0_0_0_0_0    MATURE-3P            1         3.23            1         7.14            0         0.00                      20A2   
............................................................AATGCACCCGGGCAAGGATTTGGt..........................   31444_1_0_0_0_0_0    MATURE-3P            1         3.23            1         7.14            0         0.00                        23   
............................................................AATGCACCCGGGtAAGGATTTGt...........................   23714_1_0_0_0_0_0    MATURE-3P            1         3.23            1         7.14            0         0.00                      12T9   
............................................................AATGCACCCGGGCAAGGAgTTGt...........................   13454_0_0_0_0_0_1    MATURE-3P            1         3.23            0         0.00            1         5.88                      18G3   
............................................................AATGCACCCGGGCAAGGATT..............................   10014_1_0_0_0_0_0    MATURE-3P            1         3.23            1         7.14            0         0.00                        20   
............................................................AATGCACCCGGGCAAGGAcTTGG...........................   26677_0_0_0_0_0_1    MATURE-3P            1         3.23            0         0.00            1         5.88                      18C4   
............................................................AATGCACCCGGGCAAGGAaTTGG...........................   28964_1_0_0_0_0_0    MATURE-3P            1         3.23            1         7.14            0         0.00                      18A4   
                                                                                                                                                  ----------                ----------                ----------   
                                                                                                                                                          31                        14                        17                                          
                                                                                                                                                                               (45.16)                   (54.84)                                       




*** MATURE-5P ***
_____________________________________________________________________________________________________________
CTTCTGCTCTGCTCATCCTCTCTAATCCTTTGTCCCTGGGTGAAAATGCTATTTGTATGCAATGCACCCGGGCAAGGATTTGGGGAAGGTGAGCCTGATCTGCATGGAG REF                  X                    6818369 - 6818477    
                                                            AATGCACCCGGGCAAGGATTTG                            MATURE-3P            X                    6818430 - 6818559    mmu-miR-501-3p       -                    
                       AATCCTTTGTCCCTGGGTGAAA                                                                 MATURE-5P            X                    6818393 - 6818522    mmu-miR-501-5p       -                    
_____________________________________________________________________________________________________________

                                                                                                         -SEQ-               -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
.......................AATCCTTTGTCCCTGGGTGAAAAT...............................................................   18712_3_0_0_0_0_13    MATURE-5P           16        33.33            3        27.27           13        35.14                        24   
.......................AATCCTTTGTCCCTGGGTGA...................................................................    12665_2_0_0_0_0_3    MATURE-5P            5        10.42            2        18.18            3         8.11                        20   
.......................AATCCTTTGTCCCTGGGTGAAAA................................................................    34006_2_0_0_0_0_3    MATURE-5P            5        10.42            2        18.18            3         8.11                        23   
.......................AATCCTTTGTCCCTGGGTGAAt.................................................................    35422_0_0_0_0_0_2    MATURE-5P            2         4.17            0         0.00            2         5.41                        21   
.........................TCCTTTGTCCCTGGGTGAAAcTGCT............................................................    19123_0_0_0_0_0_2    MATURE-5P            2         4.17            0         0.00            2         5.41                      20C4   
........................ATCCTTTGTCCCTGGGTGAAAATGC.............................................................    39576_0_0_0_0_0_2    MATURE-5P            2         4.17            0         0.00            2         5.41                        25   
.......................AATCCTTTGTCCCTGGGTGAAAt................................................................     9483_0_0_0_0_0_1    MATURE-5P            1         2.08            0         0.00            1         2.70                        22   
.........................TCCTTTGTCCCTGGGTGAAAAT...............................................................    16042_0_0_0_0_0_1    MATURE-5P            1         2.08            0         0.00            1         2.70                        22   
..........................CCTTTGTCCCTGGGTGAAAATGCa............................................................    20541_1_0_0_0_0_0    MATURE-5P            1         2.08            1         9.09            0         0.00                        23   
.......................AATCCTTTGTCCCTGGGTGtAA.................................................................    32347_0_0_0_0_0_1    MATURE-5P            1         2.08            0         0.00            1         2.70                      19T2   
.........................TCCTTTGTCCCTGGGTGAAAcTGCa............................................................    37971_0_0_0_0_0_1    MATURE-5P            1         2.08            0         0.00            1         2.70                      20C3   
.......................AATCCTTTGTCCCTGaGTGAA..................................................................     7511_0_0_0_0_0_1    MATURE-5P            1         2.08            0         0.00            1         2.70                      15A5   
.......................AATCCTTTGTCCCTGGGTcAA..................................................................    13179_1_0_0_0_0_0    MATURE-5P            1         2.08            1         9.09            0         0.00                      18C2   
.......................AATCCTTTGTCCCTGGGTGAAgAT...............................................................    34017_1_0_0_0_0_0    MATURE-5P            1         2.08            1         9.09            0         0.00                      21G2   
.......................AATCCTTTGTCCCTGGaTGAA..................................................................    31279_0_0_0_0_0_1    MATURE-5P            1         2.08            0         0.00            1         2.70                      16A4   
.......................AATCCTTTGTCCCTGGGTGAAAATt..............................................................    24085_0_0_0_0_0_1    MATURE-5P            1         2.08            0         0.00            1         2.70                        24   
.......................AATCCTTTGTCCCTGGGTGAAc.................................................................    25232_0_0_0_0_0_1    MATURE-5P            1         2.08            0         0.00            1         2.70                        21   
.......................AATCCTTTGTCCCTGGGTGAAA.................................................................    35588_0_0_0_0_0_1    MATURE-5P            1         2.08            0         0.00            1         2.70                        22   
.......................AATCCTTTGTCCCTGGGTGAA..................................................................     3376_1_0_0_0_0_0    MATURE-5P            1         2.08            1         9.09            0         0.00                        21   
.......................AATCCTTTGTCCCTGGGTGgAA.................................................................    23211_0_0_0_0_0_1    MATURE-5P            1         2.08            0         0.00            1         2.70                      19G2   
.......................AATCCTTTGTCCCTGGGTaAAA.................................................................    17828_0_0_0_0_0_1    MATURE-5P            1         2.08            0         0.00            1         2.70                      18A3   
........................ATCCTTTGTCCCTGGGTGAcAATGC.............................................................     9420_0_0_0_0_0_1    MATURE-5P            1         2.08            0         0.00            1         2.70                      19C5   
                                                                                                                                                   ----------                ----------                ----------   
                                                                                                                                                           48                        11                        37                                          
                                                                                                                                                                                (22.92)                   (77.08)                                       




((( SUMMARY )))

          -CAT-          -REST-           -ACT-         -TOTAL-        -TOTAL%-
     ----------      ----------      ----------      ----------      ----------
      MATURE-3P              14              17              31          39.24%
      MATURE-5P              11              37              48          60.76%
                     ----------      ----------      ----------                
                             25              54              79                



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