[BEGIN]
REFERENCE HAIRPIN
**********************************************************************************************************************************
ID : mmu-mir-501
DESCRIPTION : mmu-mir-501 MI0004703 Mus musculus miR-501 stem-loop
CHROMOSOME : X
SPAN : 6818369 - 6818477
LENGTH : 109
SEQUENCE : CTTCTGCTCTGCTCATCCTCTCTAATCCTTTGTCCCTGGGTGAAAATGCTATTTGTATGCAATGCACCCGGGCAAGGATTTGGGGAAGGTGAGCCTGATCTGCATGGAG
OVERHANG THRESHOLD : 40%
**********************************************************************************************************************************
TARGET
******************************
CATEGORY : MATURE-3P
ID : mmu-miR-501-3p
ACCID : MI0004703
PARENT : mmu-mir-501
CHROMOSOME : X
START : 6818369
STOP : 6818477
OFFSET : 61..82
SEQUENCE : AATGCACCCGGGCAAGGATTTG
STRAND : -
******************************
TARGET
******************************
CATEGORY : MATURE-5P
ID : mmu-miR-501-5p
ACCID : MI0004703
PARENT : mmu-mir-501
CHROMOSOME : X
START : 6818369
STOP : 6818477
OFFSET : 24..45
SEQUENCE : AATCCTTTGTCCCTGGGTGAAA
STRAND : -
******************************
*** MATURE-3P ***
_____________________________________________________________________________________________________________
CTTCTGCTCTGCTCATCCTCTCTAATCCTTTGTCCCTGGGTGAAAATGCTATTTGTATGCAATGCACCCGGGCAAGGATTTGGGGAAGGTGAGCCTGATCTGCATGGAG REF X 6818369 - 6818477
AATGCACCCGGGCAAGGATTTG MATURE-3P X 6818430 - 6818559 mmu-miR-501-3p -
AATCCTTTGTCCCTGGGTGAAA MATURE-5P X 6818393 - 6818522 mmu-miR-501-5p -
_____________________________________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
............................................................AATGCACCCGGGCAAGGATTTGG........................... 39984_1_0_0_0_0_4 MATURE-3P 5 16.13 1 7.14 4 23.53 23
............................................................AATGCACCCGGGCAAGGATTTGt........................... 34372_1_0_0_0_0_3 MATURE-3P 4 12.90 1 7.14 3 17.65 22
............................................................AATGCACCCGGGCAAGGATTTGa........................... 32615_1_0_0_0_0_2 MATURE-3P 3 9.68 1 7.14 2 11.76 22
............................................................AATGCACCCGGGCAAGGATTTa............................ 42898_2_0_0_0_0_0 MATURE-3P 2 6.45 2 14.29 0 0.00 21
............................................................AATGCACCCGGGCAAGGAaTTGt........................... 1222_1_0_0_0_0_0 MATURE-3P 1 3.23 1 7.14 0 0.00 18A3
.............................................................ATGCACCCGGGtAAGGATTTGa........................... 6717_0_0_0_0_0_1 MATURE-3P 1 3.23 0 0.00 1 5.88 11T9
.............................................................ATGCACCCGGGCAAGGAgTTGG........................... 606_0_0_0_0_0_1 MATURE-3P 1 3.23 0 0.00 1 5.88 17G4
.............................................................ATGCACCCGGGCAAGGATTaGGa.......................... 38991_0_0_0_0_0_1 MATURE-3P 1 3.23 0 0.00 1 5.88 19A2
............................................................AATGCACCCGGGCAAGGATTaGGG.......................... 27214_1_0_0_0_0_0 MATURE-3P 1 3.23 1 7.14 0 0.00 20A3
............................................................AATGCACCCGGGCAAtGATTT............................. 18189_0_0_0_0_0_1 MATURE-3P 1 3.23 0 0.00 1 5.88 15T5
............................................................AATGCACCCGGGCAAGGATTTG............................ 34527_1_0_0_0_0_0 MATURE-3P 1 3.23 1 7.14 0 0.00 22
.............................................................ATGCACCCGGGtAAGGATTTGt........................... 26441_0_0_0_0_0_1 MATURE-3P 1 3.23 0 0.00 1 5.88 11T9
............................................................AATGCACCCGGGtAAGGATTTGG........................... 43324_1_0_0_0_0_0 MATURE-3P 1 3.23 1 7.14 0 0.00 12T10
.............................................................ATGCACCCGGGCAAGGATTT............................. 43401_0_0_0_0_0_1 MATURE-3P 1 3.23 0 0.00 1 5.88 20
............................................................AATGCACCCGGGCAAGGATTaGG........................... 9330_1_0_0_0_0_0 MATURE-3P 1 3.23 1 7.14 0 0.00 20A2
............................................................AATGCACCCGGGCAAGGATTTGGt.......................... 31444_1_0_0_0_0_0 MATURE-3P 1 3.23 1 7.14 0 0.00 23
............................................................AATGCACCCGGGtAAGGATTTGt........................... 23714_1_0_0_0_0_0 MATURE-3P 1 3.23 1 7.14 0 0.00 12T9
............................................................AATGCACCCGGGCAAGGAgTTGt........................... 13454_0_0_0_0_0_1 MATURE-3P 1 3.23 0 0.00 1 5.88 18G3
............................................................AATGCACCCGGGCAAGGATT.............................. 10014_1_0_0_0_0_0 MATURE-3P 1 3.23 1 7.14 0 0.00 20
............................................................AATGCACCCGGGCAAGGAcTTGG........................... 26677_0_0_0_0_0_1 MATURE-3P 1 3.23 0 0.00 1 5.88 18C4
............................................................AATGCACCCGGGCAAGGAaTTGG........................... 28964_1_0_0_0_0_0 MATURE-3P 1 3.23 1 7.14 0 0.00 18A4
---------- ---------- ----------
31 14 17
(45.16) (54.84)
*** MATURE-5P ***
_____________________________________________________________________________________________________________
CTTCTGCTCTGCTCATCCTCTCTAATCCTTTGTCCCTGGGTGAAAATGCTATTTGTATGCAATGCACCCGGGCAAGGATTTGGGGAAGGTGAGCCTGATCTGCATGGAG REF X 6818369 - 6818477
AATGCACCCGGGCAAGGATTTG MATURE-3P X 6818430 - 6818559 mmu-miR-501-3p -
AATCCTTTGTCCCTGGGTGAAA MATURE-5P X 6818393 - 6818522 mmu-miR-501-5p -
_____________________________________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
.......................AATCCTTTGTCCCTGGGTGAAAAT............................................................... 18712_3_0_0_0_0_13 MATURE-5P 16 33.33 3 27.27 13 35.14 24
.......................AATCCTTTGTCCCTGGGTGA................................................................... 12665_2_0_0_0_0_3 MATURE-5P 5 10.42 2 18.18 3 8.11 20
.......................AATCCTTTGTCCCTGGGTGAAAA................................................................ 34006_2_0_0_0_0_3 MATURE-5P 5 10.42 2 18.18 3 8.11 23
.......................AATCCTTTGTCCCTGGGTGAAt................................................................. 35422_0_0_0_0_0_2 MATURE-5P 2 4.17 0 0.00 2 5.41 21
.........................TCCTTTGTCCCTGGGTGAAAcTGCT............................................................ 19123_0_0_0_0_0_2 MATURE-5P 2 4.17 0 0.00 2 5.41 20C4
........................ATCCTTTGTCCCTGGGTGAAAATGC............................................................. 39576_0_0_0_0_0_2 MATURE-5P 2 4.17 0 0.00 2 5.41 25
.......................AATCCTTTGTCCCTGGGTGAAAt................................................................ 9483_0_0_0_0_0_1 MATURE-5P 1 2.08 0 0.00 1 2.70 22
.........................TCCTTTGTCCCTGGGTGAAAAT............................................................... 16042_0_0_0_0_0_1 MATURE-5P 1 2.08 0 0.00 1 2.70 22
..........................CCTTTGTCCCTGGGTGAAAATGCa............................................................ 20541_1_0_0_0_0_0 MATURE-5P 1 2.08 1 9.09 0 0.00 23
.......................AATCCTTTGTCCCTGGGTGtAA................................................................. 32347_0_0_0_0_0_1 MATURE-5P 1 2.08 0 0.00 1 2.70 19T2
.........................TCCTTTGTCCCTGGGTGAAAcTGCa............................................................ 37971_0_0_0_0_0_1 MATURE-5P 1 2.08 0 0.00 1 2.70 20C3
.......................AATCCTTTGTCCCTGaGTGAA.................................................................. 7511_0_0_0_0_0_1 MATURE-5P 1 2.08 0 0.00 1 2.70 15A5
.......................AATCCTTTGTCCCTGGGTcAA.................................................................. 13179_1_0_0_0_0_0 MATURE-5P 1 2.08 1 9.09 0 0.00 18C2
.......................AATCCTTTGTCCCTGGGTGAAgAT............................................................... 34017_1_0_0_0_0_0 MATURE-5P 1 2.08 1 9.09 0 0.00 21G2
.......................AATCCTTTGTCCCTGGaTGAA.................................................................. 31279_0_0_0_0_0_1 MATURE-5P 1 2.08 0 0.00 1 2.70 16A4
.......................AATCCTTTGTCCCTGGGTGAAAATt.............................................................. 24085_0_0_0_0_0_1 MATURE-5P 1 2.08 0 0.00 1 2.70 24
.......................AATCCTTTGTCCCTGGGTGAAc................................................................. 25232_0_0_0_0_0_1 MATURE-5P 1 2.08 0 0.00 1 2.70 21
.......................AATCCTTTGTCCCTGGGTGAAA................................................................. 35588_0_0_0_0_0_1 MATURE-5P 1 2.08 0 0.00 1 2.70 22
.......................AATCCTTTGTCCCTGGGTGAA.................................................................. 3376_1_0_0_0_0_0 MATURE-5P 1 2.08 1 9.09 0 0.00 21
.......................AATCCTTTGTCCCTGGGTGgAA................................................................. 23211_0_0_0_0_0_1 MATURE-5P 1 2.08 0 0.00 1 2.70 19G2
.......................AATCCTTTGTCCCTGGGTaAAA................................................................. 17828_0_0_0_0_0_1 MATURE-5P 1 2.08 0 0.00 1 2.70 18A3
........................ATCCTTTGTCCCTGGGTGAcAATGC............................................................. 9420_0_0_0_0_0_1 MATURE-5P 1 2.08 0 0.00 1 2.70 19C5
---------- ---------- ----------
48 11 37
(22.92) (77.08)
((( SUMMARY )))
-CAT- -REST- -ACT- -TOTAL- -TOTAL%-
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MATURE-3P 14 17 31 39.24%
MATURE-5P 11 37 48 60.76%
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25 54 79
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