[BEGIN]
REFERENCE HAIRPIN
*****************************************************************************************************************
ID : mmu-mir-500
DESCRIPTION : mmu-mir-500 MI0004702 Mus musculus miR-500 stem-loop
CHROMOSOME : X
SPAN : 6814809 - 6814900
LENGTH : 92
SEQUENCE : CTCCTCTGCTCCCCCTCTCTAATCCTTGCTATCTGGGTGCTTAGTGCTATCTCAATGCAATGCACCTGGGCAAGGGTTCAGAGAAGGTGAGC
OVERHANG THRESHOLD : 40%
*****************************************************************************************************************
TARGET
******************************
CATEGORY : MATURE
ID : mmu-miR-500
ACCID : MI0004702
PARENT : mmu-mir-500
CHROMOSOME : X
START : 6814809
STOP : 6814900
OFFSET : 59..80
SEQUENCE : AATGCACCTGGGCAAGGGTTCA
STRAND : -
******************************
*** MATURE ***
____________________________________________________________________________________________
CTCCTCTGCTCCCCCTCTCTAATCCTTGCTATCTGGGTGCTTAGTGCTATCTCAATGCAATGCACCTGGGCAAGGGTTCAGAGAAGGTGAGC REF X 6814809 - 6814900
AATGCACCTGGGCAAGGGTTCA MATURE X 6814868 - 6814980 mmu-miR-500 -
____________________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
..........................................................AATGCACCTGGGCAAGGGTTCAGt........... 1260_12_0_0_0_0_31 MATURE 43 14.88 12 10.71 31 17.51 23
..........................................................AATGCACCTGGGCAAGGGTTCA............. 41044_14_0_0_0_0_12 MATURE 26 9.00 14 12.50 12 6.78 22
..........................................................AATGCACCTGGGCAAGGGTTCAa............ 39438_12_0_0_0_0_13 MATURE 25 8.65 12 10.71 13 7.34 22
..........................................................AATGCACCTGGGCAAGGGTTCAt............ 41813_9_0_0_0_0_12 MATURE 21 7.27 9 8.04 12 6.78 22
..........................................................AATGCACCTGGGCAAGGaTTCA............. 28281_5_0_0_0_0_7 MATURE 12 4.15 5 4.46 7 3.95 17A4
..........................................................AATGCACCTGGGCAAGGGTaCAGt........... 35689_5_0_0_0_0_4 MATURE 9 3.11 5 4.46 4 2.26 19A3
..........................................................AATGCACCTGGGCAAGGGTTCAG............ 29009_2_0_0_0_0_6 MATURE 8 2.77 2 1.79 6 3.39 23
..........................................................AATGCACCTGGGCAAGGGcTCAGt........... 2945_2_0_0_0_0_5 MATURE 7 2.42 2 1.79 5 2.82 18C4
...........................................................ATGCACCTGGGCAAGGGTTCAG............ 32434_3_0_0_0_0_4 MATURE 7 2.42 3 2.68 4 2.26 22
..........................................................AATGCACCTGGGCAAGaGTTCA............. 28905_2_0_0_0_0_4 MATURE 6 2.08 2 1.79 4 2.26 16A5
..........................................................AATGCACCTGGGCAAGGGTTaAGt........... 41778_1_0_0_0_0_4 MATURE 5 1.73 1 0.89 4 2.26 20A2
..........................................................AATGCACCTGGGCAAGGGaTCAGt........... 32604_2_0_0_0_0_3 MATURE 5 1.73 2 1.79 3 1.69 18A4
..........................................................AATGCACCTGGGCAAGGaTTCAG............ 33702_1_0_0_0_0_4 MATURE 5 1.73 1 0.89 4 2.26 17A5
..........................................................AATGCACCTGGGCAAaGGTTC.............. 41733_4_0_0_0_0_1 MATURE 5 1.73 4 3.57 1 0.56 15A5
...........................................................ATGCACCTGGGCAAGGGTTCAGt........... 43996_1_0_0_0_0_4 MATURE 5 1.73 1 0.89 4 2.26 22
..........................................................AATGCACCTGGGCAAGGGTTtAGt........... 26111_0_0_0_0_0_4 MATURE 4 1.38 0 0.00 4 2.26 20T2
..........................................................AATGCACCTGGGCAAGGGTTC.............. 41630_1_0_0_0_0_3 MATURE 4 1.38 1 0.89 3 1.69 21
..........................................................AATGCACCTGGGCAAGGaTTCAt............ 39774_1_0_0_0_0_3 MATURE 4 1.38 1 0.89 3 1.69 17A4
...........................................................ATGCACCTGGGCAAGGGTTCA............. 41781_1_0_0_0_0_3 MATURE 4 1.38 1 0.89 3 1.69 21
..........................................................AATGCACCTGGGCAAGGGTTCt............. 30792_1_0_0_0_0_2 MATURE 3 1.04 1 0.89 2 1.13 21
..........................................................AATGCACCTGGGCAAGGGTcCAt............ 17144_2_0_0_0_0_1 MATURE 3 1.04 2 1.79 1 0.56 19C2
..........................................................AATGCACCTGGGCAAGGGgTCAGt........... 36253_0_0_0_0_0_3 MATURE 3 1.04 0 0.00 3 1.69 18G4
..........................................................AATGCACCTGGGCAAGGGTcCAGt........... 19758_1_0_0_0_0_2 MATURE 3 1.04 1 0.89 2 1.13 19C3
..........................................................AATGCACCTGGGCAAGGGTcCAG............ 36056_0_0_0_0_0_2 MATURE 2 0.69 0 0.00 2 1.13 19C3
..........................................................AATGCACCTGGGCAAGGGTTCAGA........... 31889_1_0_0_0_0_1 MATURE 2 0.69 1 0.89 1 0.56 24
...........................................................ATGCACCTGGGCAAGGGTTCAt............ 42397_1_0_0_0_0_1 MATURE 2 0.69 1 0.89 1 0.56 21
..........................................................AATGCACCTGGGCAAGtGTTCA............. 31551_1_0_0_0_0_1 MATURE 2 0.69 1 0.89 1 0.56 16T5
..........................................................AATGCACCTGGGCAAGGGTcCAGAc.......... 13526_2_0_0_0_0_0 MATURE 2 0.69 2 1.79 0 0.00 19C4
..........................................................AATGCACCTGGGCAAGcGTTCA............. 29541_2_0_0_0_0_0 MATURE 2 0.69 2 1.79 0 0.00 16C5
..........................................................AATGCACCTGGGCAAGGGgTCAt............ 34806_1_0_0_0_0_1 MATURE 2 0.69 1 0.89 1 0.56 18G3
..........................................................AATGCACCTGGGCAAGGGcTCA............. 6944_1_0_0_0_0_1 MATURE 2 0.69 1 0.89 1 0.56 18C3
..........................................................AATGCACCTGGGCAAGGaTTCt............. 34666_0_0_0_0_0_2 MATURE 2 0.69 0 0.00 2 1.13 17A3
...........................................................ATGCACCTGGGCAAGGGTTCAa............ 25615_0_0_0_0_0_2 MATURE 2 0.69 0 0.00 2 1.13 21
...........................................................ATGCACCTGGGCAAGGGTTgAGt........... 39256_1_0_0_0_0_1 MATURE 2 0.69 1 0.89 1 0.56 19G2
..........................................................AATGCACCTGGGCAAGGGcTCAG............ 14008_0_0_0_0_0_2 MATURE 2 0.69 0 0.00 2 1.13 18C4
...........................................................ATGCACCTGGGCAAGaGTTCA............. 25949_1_0_0_0_0_1 MATURE 2 0.69 1 0.89 1 0.56 15A5
..........................................................AATGCACCTGGGCAAGGGTTCAGAt.......... 44009_0_0_0_0_0_2 MATURE 2 0.69 0 0.00 2 1.13 24
..........................................................AATGCACCTGGGCAAGGGcTCAt............ 13520_2_0_0_0_0_0 MATURE 2 0.69 2 1.79 0 0.00 18C3
..........................................................AATGCACCTGGGCAAGGGTT............... 31496_1_0_0_0_0_1 MATURE 2 0.69 1 0.89 1 0.56 20
...........................................................ATGCACCTGGGCAAGGGaTCAt............ 21608_1_0_0_0_0_1 MATURE 2 0.69 1 0.89 1 0.56 17A3
.............................................................GCACCTGGGCAAGGGTTCA............. 26291_1_0_0_0_0_0 MATURE 1 0.35 1 0.89 0 0.00 19
..........................................................AATGCACCTGGGCAAGGGTTaAG............ 29081_1_0_0_0_0_0 MATURE 1 0.35 1 0.89 0 0.00 20A2
...........................................................ATGCACCTGGGCAAGGGaTCAGt........... 10133_0_0_0_0_0_1 MATURE 1 0.35 0 0.00 1 0.56 17A4
...........................................................ATGCACCTGGGCAAGGGTTCAGg........... 23104_0_0_0_0_0_1 MATURE 1 0.35 0 0.00 1 0.56 22
..........................................................AATGCACCTGGGCAAGGGTaCAGAG.......... 42718_0_0_0_0_0_1 MATURE 1 0.35 0 0.00 1 0.56 19A5
..........................................................AATGCACCTGGGCAAGGcTTCA............. 16214_1_0_0_0_0_0 MATURE 1 0.35 1 0.89 0 0.00 17C4
..........................................................AATGCACCTGGGCAAGaGTTCg............. 4361_1_0_0_0_0_0 MATURE 1 0.35 1 0.89 0 0.00 16A4
..........................................................AATGCACCTGGGCAAGGGTTCc............. 17942_0_0_0_0_0_1 MATURE 1 0.35 0 0.00 1 0.56 21
..........................................................AATGCACCTGGGCAAGGGTTCAc............ 37080_1_0_0_0_0_0 MATURE 1 0.35 1 0.89 0 0.00 22
..........................................................AATGCACCTGGGCAAGGcTTCt............. 11655_0_0_0_0_0_1 MATURE 1 0.35 0 0.00 1 0.56 17C3
...........................................................ATGCACCTGGGCAAGGGTgCA............. 37253_0_0_0_0_0_1 MATURE 1 0.35 0 0.00 1 0.56 18G2
........................................................GCtATGCACCTGGGCAAGGGTTCAt............ 786_1_0_0_0_0_0 MATURE 1 0.35 1 0.89 0 0.00 2T21
..........................................................AATGCACCTGGGCAAGGGTgCAGA........... 26663_0_0_0_0_0_1 MATURE 1 0.35 0 0.00 1 0.56 19G4
..........................................................AATGCACCTGGGCAAGGGTaCAG............ 39388_0_0_0_0_0_1 MATURE 1 0.35 0 0.00 1 0.56 19A3
..........................................................AATGCACCTGGGCAAGGGTaCA............. 3731_0_0_0_0_0_1 MATURE 1 0.35 0 0.00 1 0.56 19A2
..........................................................AATGCACCTGGGCAAGGtTTC.............. 17920_0_0_0_0_0_1 MATURE 1 0.35 0 0.00 1 0.56 17T3
..........................................................AATGCACCTGGGCAAGGaTTC.............. 17662_0_0_0_0_0_1 MATURE 1 0.35 0 0.00 1 0.56 17A3
...........................................................ATGCACCTGGGCAAGGGgTCAt............ 27671_0_0_0_0_0_1 MATURE 1 0.35 0 0.00 1 0.56 17G3
..........................................................AATGCACCTGGGCAAGGGTTCAcAG.......... 20504_1_0_0_0_0_0 MATURE 1 0.35 1 0.89 0 0.00 22C2
..........................................................AATGCACCTGGGCAAGaGTTC.............. 31155_1_0_0_0_0_0 MATURE 1 0.35 1 0.89 0 0.00 16A4
...........................................................ATGCACCTGGGCAAGGGaTCAG............ 26367_0_0_0_0_0_1 MATURE 1 0.35 0 0.00 1 0.56 17A4
...........................................................ATGCACCTGGGCAAGGGTcCAt............ 9604_0_0_0_0_0_1 MATURE 1 0.35 0 0.00 1 0.56 18C2
..........................................................AATGCACCTGGGCAAGGGTcCA............. 16731_0_0_0_0_0_1 MATURE 1 0.35 0 0.00 1 0.56 19C2
...........................................................ATGCACCTGGGCAAGGGTcCAG............ 35264_0_0_0_0_0_1 MATURE 1 0.35 0 0.00 1 0.56 18C3
..........................................................AATGCACCTGGGCAAGGGcTCt............. 28707_1_0_0_0_0_0 MATURE 1 0.35 1 0.89 0 0.00 18C2
............................................................TGCACCTGGGCAAGGGTTCA............. 29445_0_0_0_0_0_1 MATURE 1 0.35 0 0.00 1 0.56 20
........................................................GCAATGCACCTGGGCAAGGaTTCA............. 15704_1_0_0_0_0_0 MATURE 1 0.35 1 0.89 0 0.00 19A4
..........................................................AATGCACCTGGGCAAGGaTTCAa............ 9168_0_0_0_0_0_1 MATURE 1 0.35 0 0.00 1 0.56 17A4
...........................................................ATGCACCTGGGCAAGGGaTCAGA........... 41472_0_0_0_0_0_1 MATURE 1 0.35 0 0.00 1 0.56 17A5
..........................................................AATGCACCTGGGCAAGGGTTCAGg........... 35948_0_0_0_0_0_1 MATURE 1 0.35 0 0.00 1 0.56 23
...........................................................ATGCACCTGGGCAAGcGTTCA............. 19924_1_0_0_0_0_0 MATURE 1 0.35 1 0.89 0 0.00 15C5
..........................................................AATGCACCTGGGCAAGGGTcCAa............ 22269_1_0_0_0_0_0 MATURE 1 0.35 1 0.89 0 0.00 19C2
...........................................................ATGCACCTGGGCAAGGaTTCAa............ 44004_0_0_0_0_0_1 MATURE 1 0.35 0 0.00 1 0.56 16A4
..........................................................AATGCACCTGGGCAAGGGTTtAGAt.......... 28993_1_0_0_0_0_0 MATURE 1 0.35 1 0.89 0 0.00 20T3
...........................................................ATGCACCTGGGCAAGtGTTCA............. 39506_0_0_0_0_0_1 MATURE 1 0.35 0 0.00 1 0.56 15T5
..........................................................AATGCACCTGGGCAAGaGTTCc............. 5694_1_0_0_0_0_0 MATURE 1 0.35 1 0.89 0 0.00 16A4
..........................................................AATGCACCTGGGCAAGGGTTCAGc........... 8040_0_0_0_0_0_1 MATURE 1 0.35 0 0.00 1 0.56 23
...........................................................ATGCACCTGGGCAAGGGTTCg............. 35976_1_0_0_0_0_0 MATURE 1 0.35 1 0.89 0 0.00 20
---------- ---------- ----------
289 112 177
(38.75) (61.25)
*** OTHER ***
____________________________________________________________________________________________
CTCCTCTGCTCCCCCTCTCTAATCCTTGCTATCTGGGTGCTTAGTGCTATCTCAATGCAATGCACCTGGGCAAGGGTTCAGAGAAGGTGAGC REF X 6814809 - 6814900
AATGCACCTGGGCAAGGGTTCA MATURE X 6814868 - 6814980 mmu-miR-500 -
____________________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
....................AATCCTTGCTATCTGGGTGCTTA.................................................. 23319_2_0_0_0_0_0 OTHER 2 20.00 2 40.00 0 0.00 23
....................AATCCTTGCTATCTGGGTGCaTAGT................................................ 1839_0_0_0_0_0_1 OTHER 1 10.00 0 0.00 1 20.00 20A4
....................AATCCTTGCTATCTGGGTaCTT................................................... 35831_0_0_0_0_0_1 OTHER 1 10.00 0 0.00 1 20.00 18A3
....................AATCCTTGCTATCTGGGTGCTTt.................................................. 31534_1_0_0_0_0_0 OTHER 1 10.00 1 20.00 0 0.00 22
.TCCTCTGCTCCCCCTCTCT......................................................................... 22154_1_0_0_0_0_0 OTHER 1 10.00 1 20.00 0 0.00 19
....................AATCCTTGCTATCTGGGTGCTTAG................................................. 24586_0_0_0_0_0_1 OTHER 1 10.00 0 0.00 1 20.00 24
CTCCTCTGCTCCCCCTCTCT......................................................................... 84_1_0_0_0_0_0 OTHER 1 10.00 1 20.00 0 0.00 20
....................AATCCTTGCTATCTGGtTGCTT................................................... 10632_0_0_0_0_0_1 OTHER 1 10.00 0 0.00 1 20.00 16T5
....................AATCCTTGCTATCTGGGTGCTTgGT................................................ 30324_0_0_0_0_0_1 OTHER 1 10.00 0 0.00 1 20.00 22G2
---------- ---------- ----------
10 5 5
(50.00) (50.00)
((( SUMMARY )))
-CAT- -REST- -ACT- -TOTAL- -TOTAL%-
---------- ---------- ---------- ---------- ----------
MATURE 112 177 289 96.66%
OTHER 5 5 10 3.34%
---------- ---------- ----------
117 182 299
[END]