[BEGIN]
REFERENCE HAIRPIN
*****************************************************************************************************************************************************
ID : mmu-mir-486
DESCRIPTION : mmu-mir-486 MI0003493 Mus musculus miR-486 stem-loop
CHROMOSOME : 8
SPAN : 24253027 - 24253154
LENGTH : 128
SEQUENCE : CAGCCAGCTCTGATCTCGCCCTCCCTGAGGGGTCCTGTACTGAGCTGCCCCGAGGTCCTTCACTGTGCTCAGCTCGGGGCAGCTCAGTACAGGATGCGTCAGGGTGGGAGACAACGGGGAACAAGCCA
OVERHANG THRESHOLD : 40%
*****************************************************************************************************************************************************
TARGET
******************************
CATEGORY : MATURE
ID : mmu-miR-486
ACCID : MI0003493
PARENT : mmu-mir-486
CHROMOSOME : 8
START : 24253027
STOP : 24253154
OFFSET : 33..54
SEQUENCE : TCCTGTACTGAGCTGCCCCGAG
STRAND : +
******************************
*** MATURE ***
________________________________________________________________________________________________________________________________
CAGCCAGCTCTGATCTCGCCCTCCCTGAGGGGTCCTGTACTGAGCTGCCCCGAGGTCCTTCACTGTGCTCAGCTCGGGGCAGCTCAGTACAGGATGCGTCAGGGTGGGAGACAACGGGGAACAAGCCA REF 8 24253027 - 24253154
TCCTGTACTGAGCTGCCCCGAG MATURE 8 24253060 - 24253208 mmu-miR-486 +
________________________________________________________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
...............................GTCCTGTACTGAGCTGCCCCGAGt.......................................................................... 15741_12_0_0_0_0_3 MATURE 15 16.85 12 26.09 3 6.98 23
...............................GTCCTGTACTGAGCTGCCCCGAaGT......................................................................... 39711_6_0_0_0_0_4 MATURE 10 11.24 6 13.04 4 9.30 22A2
...............................GTCCTGTACTGAGCTGCCCCGAGGT......................................................................... 44111_2_0_0_0_0_6 MATURE 8 8.99 2 4.35 6 13.95 25
...............................GTCCTGTACTGAGCTGCCaCGAGt.......................................................................... 39201_1_0_0_0_0_3 MATURE 4 4.49 1 2.17 3 6.98 18A4
...............................GTCCTGTACTGAGCTGCCCCGAa........................................................................... 5537_2_0_0_0_0_2 MATURE 4 4.49 2 4.35 2 4.65 22
...............................GTCCTGTACTGAGCTGCCCCGAtGT......................................................................... 42861_2_0_0_0_0_1 MATURE 3 3.37 2 4.35 1 2.33 22T2
...............................GTCCTGTACTGAGCTGCCCCGAG........................................................................... 40083_2_0_0_0_0_1 MATURE 3 3.37 2 4.35 1 2.33 23
...............................GTCCTGTACTGAGCTGCCCCaAG........................................................................... 32613_1_0_0_0_0_2 MATURE 3 3.37 1 2.17 2 4.65 20A2
...............................GTCCTGTACTGAGCTGCCCtGAGt.......................................................................... 27498_1_0_0_0_0_2 MATURE 3 3.37 1 2.17 2 4.65 19T3
...............................GTCCTGTACTGAGCTGCCCCaAGt.......................................................................... 20823_0_0_0_0_0_3 MATURE 3 3.37 0 0.00 3 6.98 20A2
...............................GTCCTGTACTGAGCTGCCCCGAGa.......................................................................... 19462_1_0_0_0_0_1 MATURE 2 2.25 1 2.17 1 2.33 23
...............................GTCCTGTACTGAGCTGCCaCGAGa.......................................................................... 36866_2_0_0_0_0_0 MATURE 2 2.25 2 4.35 0 0.00 18A4
...............................GTCCTGTACTGAGCTGCtCCGAG........................................................................... 25171_1_0_0_0_0_1 MATURE 2 2.25 1 2.17 1 2.33 17T5
...............................GTCCTGTACTGAGCTGCCCaGAGt.......................................................................... 32784_1_0_0_0_0_1 MATURE 2 2.25 1 2.17 1 2.33 19A3
...............................GTCCTGTACTGAGCTGCCCCGAGGa......................................................................... 28896_1_0_0_0_0_1 MATURE 2 2.25 1 2.17 1 2.33 24
...............................GTCCTGTACTGAGCTGCCCCGAGGc......................................................................... 7590_1_0_0_0_0_1 MATURE 2 2.25 1 2.17 1 2.33 24
............................GGcGTCCTGTACTGAGCTGCCCCGA............................................................................ 12863_0_0_0_0_0_2 MATURE 2 2.25 0 0.00 2 4.65 2C22
...............................GTCCTGTACTGAGCTGCCaCGAa........................................................................... 30726_0_0_0_0_0_2 MATURE 2 2.25 0 0.00 2 4.65 18A3
...............................GTCCTGTACTGAGCTGCCCCGAcGT......................................................................... 4702_1_0_0_0_0_1 MATURE 2 2.25 1 2.17 1 2.33 22C2
...............................GTCCTGTACTGAGCTGCCgCGAG........................................................................... 16122_0_0_0_0_0_1 MATURE 1 1.12 0 0.00 1 2.33 18G4
...............................GTCCTGTACTGAGCTGCCCCcAG........................................................................... 33365_0_0_0_0_0_1 MATURE 1 1.12 0 0.00 1 2.33 20C2
...............................GTCCTGTACTGAGCTGCCaCGAG........................................................................... 29603_1_0_0_0_0_0 MATURE 1 1.12 1 2.17 0 0.00 18A4
...............................GTCCTGTACTGAGCTGCCCCcAGt.......................................................................... 30988_1_0_0_0_0_0 MATURE 1 1.12 1 2.17 0 0.00 20C2
...............................GTCCTGTACTGAGCTGCCCCGAt........................................................................... 9452_0_0_0_0_0_1 MATURE 1 1.12 0 0.00 1 2.33 22
...............................GTCCTGTACTGAGCTGCCaCGAt........................................................................... 39269_1_0_0_0_0_0 MATURE 1 1.12 1 2.17 0 0.00 18A3
..............................GGTCCTGTACTGAGCTGCCCCGAa........................................................................... 44199_1_0_0_0_0_0 MATURE 1 1.12 1 2.17 0 0.00 23
...............................GTCCTGTACTGAGCTGCCaCGAGG.......................................................................... 18562_0_0_0_0_0_1 MATURE 1 1.12 0 0.00 1 2.33 18A5
...............................GTCtTGTACTGAGCTGCCCCGAa........................................................................... 6435_1_0_0_0_0_0 MATURE 1 1.12 1 2.17 0 0.00 3T18
..............................GGTCCTGTACTGAGCTGCCaCGAG........................................................................... 29120_0_0_0_0_0_1 MATURE 1 1.12 0 0.00 1 2.33 19A4
...............................GTCCTGTACTGAGCTGCCtCGAGt.......................................................................... 30729_1_0_0_0_0_0 MATURE 1 1.12 1 2.17 0 0.00 18T4
...............................GTCCTGTACTGAGCTGCtCCGAt........................................................................... 4143_1_0_0_0_0_0 MATURE 1 1.12 1 2.17 0 0.00 17T4
...............................GTCCTGTACTGAGCTGCCCtGAGa.......................................................................... 2803_1_0_0_0_0_0 MATURE 1 1.12 1 2.17 0 0.00 19T3
...............................GTCCTGTACTGAGCTGCCgCGAGa.......................................................................... 41289_1_0_0_0_0_0 MATURE 1 1.12 1 2.17 0 0.00 18G4
...............................GTCCTGTACTGAGCTGCCCCaAGa.......................................................................... 27041_0_0_0_0_0_1 MATURE 1 1.12 0 0.00 1 2.33 20A2
---------- ---------- ----------
89 46 43
(51.69) (48.31)
((( SUMMARY )))
-CAT- -REST- -ACT- -TOTAL- -TOTAL%-
---------- ---------- ---------- ---------- ----------
MATURE 46 43 89 100.00%
---------- ---------- ----------
46 43 89
[END]