[BEGIN]

REFERENCE HAIRPIN
*******************************************************************************************************************
ID                 : mmu-mir-466f-1
DESCRIPTION        : mmu-mir-466f-1 MI0005507 Mus musculus miR-466f-1 stem-loop
CHROMOSOME         : 2
SPAN               : 10388571 - 10388664
LENGTH             : 94
SEQUENCE           : CATGTGTGTTTACGTGTGTGTGCATGTGCATGTGTGTATATGAATATACATACACATACACACACACATACACACACATGCAACACACACATAT
OVERHANG THRESHOLD : 40%
*******************************************************************************************************************


TARGET
******************************
CATEGORY   : MATURE-3P
ID         : mmu-miR-466f-3p
ACCID      : MI0005507
PARENT     : mmu-mir-466f-1
CHROMOSOME : 2
START      : 10388571
STOP       : 10388664
OFFSET     : 55..75
SEQUENCE   : CATACACACACACATACACAC
STRAND     : +
******************************


TARGET
******************************
CATEGORY   : MATURE-5P
ID         : mmu-miR-466f-5p
ACCID      : MI0005507
PARENT     : mmu-mir-466f-1
CHROMOSOME : 2
START      : 10388571
STOP       : 10388664
OFFSET     : 11..32
SEQUENCE   : TACGTGTGTGTGCATGTGCATG
STRAND     : +
******************************



*** MATURE-3P ***
______________________________________________________________________________________________
CATGTGTGTTTACGTGTGTGTGCATGTGCATGTGTGTATATGAATATACATACACATACACACACACATACACACACATGCAACACACACATAT REF                  2                    10388571 - 10388664  
                                                      CATACACACACACATACACAC                    MATURE-3P            2                    10388626 - 10388739  mmu-miR-466f-3p      +                    
          TACGTGTGTGTGCATGTGCATG                                                               MATURE-5P            2                    10388582 - 10388696  mmu-miR-466f-5p      +                    
______________________________________________________________________________________________

                                                                                          -SEQ-              -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
.........................................................ACACACACACATACACACAC..................   36443_1_0_0_0_0_4    MATURE-3P            5        35.71            1        50.00            4        33.33                        20   
...................................................ACACATACACACACACATACACAC....................   11741_0_0_0_0_0_4    MATURE-3P            4        28.57            0         0.00            4        33.33                        24   
..........................................................CACACACACATACACACAC..................   15292_0_0_0_0_0_2    MATURE-3P            2        14.29            0         0.00            2        16.67                        19   
.......................................................ATACACACACACATACACACAC..................   39945_1_0_0_0_0_1    MATURE-3P            2        14.29            1        50.00            1         8.33                        22   
.........................................................ACACACACACATACACACACA.................   10194_0_0_0_0_0_1    MATURE-3P            1         7.14            0         0.00            1         8.33                        21   
                                                                                                                                   ----------                ----------                ----------   
                                                                                                                                           14                         2                        12                                          
                                                                                                                                                                (14.29)                   (85.71)                                       




((( SUMMARY )))

          -CAT-          -REST-           -ACT-         -TOTAL-        -TOTAL%-
     ----------      ----------      ----------      ----------      ----------
      MATURE-3P               2              12              14         100.00%
                     ----------      ----------      ----------                
                              2              12              14                



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