[BEGIN]

REFERENCE HAIRPIN
*********************************************************************************************************************
ID                 : mmu-mir-466d
DESCRIPTION        : mmu-mir-466d MI0005546 Mus musculus miR-466d stem-loop
CHROMOSOME         : 2
SPAN               : 10433594 - 10433689
LENGTH             : 96
SEQUENCE           : CATGTGTGTTTGTGTGTGCGTACATGTACATGTGTGTATATGAATATACATATACATACACGCACACATAGATACGCACGCACACACACACACAGG
OVERHANG THRESHOLD : 40%
*********************************************************************************************************************


TARGET
******************************
CATEGORY   : MATURE-3P
ID         : mmu-miR-466d-3p
ACCID      : MI0005546
PARENT     : mmu-mir-466d
CHROMOSOME : 2
START      : 10433594
STOP       : 10433689
OFFSET     : 51..71
SEQUENCE   : TATACATACACGCACACATAG
STRAND     : +
******************************


TARGET
******************************
CATEGORY   : MATURE-5P
ID         : mmu-miR-466d-5p
ACCID      : MI0005546
PARENT     : mmu-mir-466d
CHROMOSOME : 2
START      : 10433594
STOP       : 10433689
OFFSET     : 11..32
SEQUENCE   : TGTGTGTGCGTACATGTACATG
STRAND     : +
******************************



*** MATURE-3P ***
________________________________________________________________________________________________
CATGTGTGTTTGTGTGTGCGTACATGTACATGTGTGTATATGAATATACATATACATACACGCACACATAGATACGCACGCACACACACACACAGG REF                  2                    10433594 - 10433689  
                                                  TATACATACACGCACACATAG                          MATURE-3P            2                    10433645 - 10433760  mmu-miR-466d-3p      +                    
          TGTGTGTGCGTACATGTACATG                                                                 MATURE-5P            2                    10433605 - 10433721  mmu-miR-466d-5p      +                    
________________________________________________________________________________________________

                                                                                            -SEQ-                 -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
.................................................ATATACATACACGCACACATAGAc........................       8015_1_0_0_0_0_0    MATURE-3P            1        25.00            1        50.00            0         0.00                        23   
.................................................ATATACATACACGCACACATAGt.........................       4678_0_0_0_0_0_1    MATURE-3P            1        25.00            0         0.00            1        50.00                        22   
...................................................ATACATACACGCACACATAGt.........................      42900_0_0_0_0_0_1    MATURE-3P            1        25.00            0         0.00            1        50.00                        20   
..................................................TATACATACACGCACACAT............................      34675_1_0_0_0_0_0    MATURE-3P            1        25.00            1        50.00            0         0.00                        19   
                                                                                                                                        ----------                ----------                ----------   
                                                                                                                                                 4                         2                         2                                          
                                                                                                                                                                     (50.00)                   (50.00)                                       




*** MATURE-5P ***
________________________________________________________________________________________________
CATGTGTGTTTGTGTGTGCGTACATGTACATGTGTGTATATGAATATACATATACATACACGCACACATAGATACGCACGCACACACACACACAGG REF                  2                    10433594 - 10433689  
                                                  TATACATACACGCACACATAG                          MATURE-3P            2                    10433645 - 10433760  mmu-miR-466d-3p      +                    
          TGTGTGTGCGTACATGTACATG                                                                 MATURE-5P            2                    10433605 - 10433721  mmu-miR-466d-5p      +                    
________________________________________________________________________________________________

                                                                                            -SEQ-              -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
...........GTGTGTGCGTACATGTACATGTGT..............................................................   28405_1_0_0_0_0_0    MATURE-5P            1       100.00            1       100.00            0            0                        24   
                                                                                                                                     ----------                ----------                ----------   
                                                                                                                                              1                         1                         0                                          
                                                                                                                                                                 (100.00)                    (0.00)                                       




((( SUMMARY )))

          -CAT-          -REST-           -ACT-         -TOTAL-        -TOTAL%-
     ----------      ----------      ----------      ----------      ----------
      MATURE-3P               2               2               4          80.00%
      MATURE-5P               1               0               1          20.00%
                     ----------      ----------      ----------                
                              3               2               5                



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