[BEGIN]

REFERENCE HAIRPIN
********************************************************************************************************
ID                 : mmu-mir-429
DESCRIPTION        : mmu-mir-429 MI0001642 Mus musculus miR-429 stem-loop
CHROMOSOME         : 4
SPAN               : 155428014 - 155428096
LENGTH             : 83
SEQUENCE           : CCTGCTGATGGATGTCTTACCAGACATGGTTAGATCTGGATGCATCTGTCTAATACTGTCTGGTAATGCCGTCCATCCACGGC
OVERHANG THRESHOLD : 40%
********************************************************************************************************


TARGET
******************************
CATEGORY   : MATURE
ID         : mmu-miR-429
ACCID      : MI0001642
PARENT     : mmu-mir-429
CHROMOSOME : 4
START      : 155428014
STOP       : 155428096
OFFSET     : 51..72
SEQUENCE   : TAATACTGTCTGGTAATGCCGT
STRAND     : -
******************************



*** MATURE ***
___________________________________________________________________________________
CCTGCTGATGGATGTCTTACCAGACATGGTTAGATCTGGATGCATCTGTCTAATACTGTCTGGTAATGCCGTCCATCCACGGC REF                  4                    155428014 - 155428096 
                                                  TAATACTGTCTGGTAATGCCGT            MATURE               4                    155428065 - 155428168 mmu-miR-429          -                    
___________________________________________________________________________________

                                                                               -SEQ-               -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
..................................................TAATACTGTCTGGTAATGCCGT............   23712_6_0_0_0_0_10       MATURE           16        18.18            6        17.14           10        18.87                        22   
..................................................TAATACTGTCTGGTAATaCCGT............    36952_9_0_0_0_0_6       MATURE           15        17.05            9        25.71            6        11.32                      17A4   
...............................................GTgTAATACTGTCTGGTAATGCCGT............    15175_2_0_0_0_0_6       MATURE            8         9.09            2         5.71            6        11.32                      2G22   
..................................................TAATACTGTCTGGTAAaGCCGT............     9566_3_0_0_0_0_2       MATURE            5         5.68            3         8.57            2         3.77                      16A5   
..................................................TAATACTGTCTGGTAATaCCG.............    17173_0_0_0_0_0_4       MATURE            4         4.55            0         0.00            4         7.55                      17A3   
..................................................TAATACTGTCTGGTAATaCCGTa...........    22979_1_0_0_0_0_3       MATURE            4         4.55            1         2.86            3         5.66                      17A4   
..................................................TAATACTGTCTGGTAATcCCGT............    30666_3_0_0_0_0_0       MATURE            3         3.41            3         8.57            0         0.00                      17C4   
..................................................TAATACTGTCTGGTAATGCCGTt...........    36273_0_0_0_0_0_3       MATURE            3         3.41            0         0.00            3         5.66                        22   
..................................................TAATACTGTCTGGTAATGCCG.............    42877_1_0_0_0_0_2       MATURE            3         3.41            1         2.86            2         3.77                        21   
..................................................TAATACTGTCTGGTAATGCCGTa...........    19138_2_0_0_0_0_0       MATURE            2         2.27            2         5.71            0         0.00                        22   
..................................................TAATACTGTCTGGTAAaGCCGa............    33882_0_0_0_0_0_2       MATURE            2         2.27            0         0.00            2         3.77                      16A4   
.................................................CTAATACTGTCTGGTAATGCaGTt...........    25495_0_0_0_0_0_2       MATURE            2         2.27            0         0.00            2         3.77                      20A2   
...................................................AATACTGTCTGGTAATaCCGTt...........    23003_1_0_0_0_0_1       MATURE            2         2.27            1         2.86            1         1.89                      16A4   
..................................................TAATACTGTCTGGTAATaCCGTt...........    27535_0_0_0_0_0_2       MATURE            2         2.27            0         0.00            2         3.77                      17A4   
..................................................TAATACTGTCTGGTAATGCCt.............    36186_2_0_0_0_0_0       MATURE            2         2.27            2         5.71            0         0.00                        20   
..................................................TAATACTGTCTGGTAATGCCGc............    19642_1_0_0_0_0_0       MATURE            1         1.14            1         2.86            0         0.00                        21   
.................................................CTAATACTGTCTGGTAATGCCGT............     6483_1_0_0_0_0_0       MATURE            1         1.14            1         2.86            0         0.00                        23   
..................................................TAATACTGTCTGGTAATGtCGT............    23931_1_0_0_0_0_0       MATURE            1         1.14            1         2.86            0         0.00                      18T3   
..................................................TAATACTGTCTGGTAATGCCGa............    37405_0_0_0_0_0_1       MATURE            1         1.14            0         0.00            1         1.89                        21   
...................................................AATACTGTCTGGTAATaCCGTa...........    12994_0_0_0_0_0_1       MATURE            1         1.14            0         0.00            1         1.89                      16A4   
..................................................TAATACTGTCTGGTAATtCCGT............    43215_0_0_0_0_0_1       MATURE            1         1.14            0         0.00            1         1.89                      17T4   
..................................................TAATACTGTCTGGTAAaGCCG.............     3146_1_0_0_0_0_0       MATURE            1         1.14            1         2.86            0         0.00                      16A4   
..................................................TAATACTGTCTGGTAATaCCGa............    29858_1_0_0_0_0_0       MATURE            1         1.14            1         2.86            0         0.00                      17A3   
..................................................TAATACTGTCTGGTAAcGCCGT............     5086_0_0_0_0_0_1       MATURE            1         1.14            0         0.00            1         1.89                      16C5   
..................................................TAATACTGTCTGGTAATGaCGT............    32246_0_0_0_0_0_1       MATURE            1         1.14            0         0.00            1         1.89                      18A3   
..................................................TAATACTGTCTGGTAATtCCGTa...........     4051_0_0_0_0_0_1       MATURE            1         1.14            0         0.00            1         1.89                      17T4   
..................................................TAATACTGTCTGGTAATaCCGTg...........      312_0_0_0_0_0_1       MATURE            1         1.14            0         0.00            1         1.89                      17A4   
..................................................TAATACTGTCTGGTAATGCCGg............    22373_0_0_0_0_0_1       MATURE            1         1.14            0         0.00            1         1.89                        21   
..................................................TAATACTGTCTGGTAATGCaGTt...........    21761_0_0_0_0_0_1       MATURE            1         1.14            0         0.00            1         1.89                      19A2   
..................................................TAATACTGTCTGGTAgTGCCG.............    36134_0_0_0_0_0_1       MATURE            1         1.14            0         0.00            1         1.89                      15G5   
                                                                                                                         ----------                ----------                ----------   
                                                                                                                                 88                        35                        53                                          
                                                                                                                                                      (39.77)                   (60.23)                                       




((( SUMMARY )))

          -CAT-          -REST-           -ACT-         -TOTAL-        -TOTAL%-
     ----------      ----------      ----------      ----------      ----------
         MATURE              35              53              88         100.00%
                     ----------      ----------      ----------                
                             35              53              88                



[END]
