[BEGIN]
REFERENCE HAIRPIN
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ID : mmu-mir-429
DESCRIPTION : mmu-mir-429 MI0001642 Mus musculus miR-429 stem-loop
CHROMOSOME : 4
SPAN : 155428014 - 155428096
LENGTH : 83
SEQUENCE : CCTGCTGATGGATGTCTTACCAGACATGGTTAGATCTGGATGCATCTGTCTAATACTGTCTGGTAATGCCGTCCATCCACGGC
OVERHANG THRESHOLD : 40%
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TARGET
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CATEGORY : MATURE
ID : mmu-miR-429
ACCID : MI0001642
PARENT : mmu-mir-429
CHROMOSOME : 4
START : 155428014
STOP : 155428096
OFFSET : 51..72
SEQUENCE : TAATACTGTCTGGTAATGCCGT
STRAND : -
******************************
*** MATURE ***
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CCTGCTGATGGATGTCTTACCAGACATGGTTAGATCTGGATGCATCTGTCTAATACTGTCTGGTAATGCCGTCCATCCACGGC REF 4 155428014 - 155428096
TAATACTGTCTGGTAATGCCGT MATURE 4 155428065 - 155428168 mmu-miR-429 -
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-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
..................................................TAATACTGTCTGGTAATGCCGT............ 23712_6_0_0_0_0_10 MATURE 16 18.18 6 17.14 10 18.87 22
..................................................TAATACTGTCTGGTAATaCCGT............ 36952_9_0_0_0_0_6 MATURE 15 17.05 9 25.71 6 11.32 17A4
...............................................GTgTAATACTGTCTGGTAATGCCGT............ 15175_2_0_0_0_0_6 MATURE 8 9.09 2 5.71 6 11.32 2G22
..................................................TAATACTGTCTGGTAAaGCCGT............ 9566_3_0_0_0_0_2 MATURE 5 5.68 3 8.57 2 3.77 16A5
..................................................TAATACTGTCTGGTAATaCCG............. 17173_0_0_0_0_0_4 MATURE 4 4.55 0 0.00 4 7.55 17A3
..................................................TAATACTGTCTGGTAATaCCGTa........... 22979_1_0_0_0_0_3 MATURE 4 4.55 1 2.86 3 5.66 17A4
..................................................TAATACTGTCTGGTAATcCCGT............ 30666_3_0_0_0_0_0 MATURE 3 3.41 3 8.57 0 0.00 17C4
..................................................TAATACTGTCTGGTAATGCCGTt........... 36273_0_0_0_0_0_3 MATURE 3 3.41 0 0.00 3 5.66 22
..................................................TAATACTGTCTGGTAATGCCG............. 42877_1_0_0_0_0_2 MATURE 3 3.41 1 2.86 2 3.77 21
..................................................TAATACTGTCTGGTAATGCCGTa........... 19138_2_0_0_0_0_0 MATURE 2 2.27 2 5.71 0 0.00 22
..................................................TAATACTGTCTGGTAAaGCCGa............ 33882_0_0_0_0_0_2 MATURE 2 2.27 0 0.00 2 3.77 16A4
.................................................CTAATACTGTCTGGTAATGCaGTt........... 25495_0_0_0_0_0_2 MATURE 2 2.27 0 0.00 2 3.77 20A2
...................................................AATACTGTCTGGTAATaCCGTt........... 23003_1_0_0_0_0_1 MATURE 2 2.27 1 2.86 1 1.89 16A4
..................................................TAATACTGTCTGGTAATaCCGTt........... 27535_0_0_0_0_0_2 MATURE 2 2.27 0 0.00 2 3.77 17A4
..................................................TAATACTGTCTGGTAATGCCt............. 36186_2_0_0_0_0_0 MATURE 2 2.27 2 5.71 0 0.00 20
..................................................TAATACTGTCTGGTAATGCCGc............ 19642_1_0_0_0_0_0 MATURE 1 1.14 1 2.86 0 0.00 21
.................................................CTAATACTGTCTGGTAATGCCGT............ 6483_1_0_0_0_0_0 MATURE 1 1.14 1 2.86 0 0.00 23
..................................................TAATACTGTCTGGTAATGtCGT............ 23931_1_0_0_0_0_0 MATURE 1 1.14 1 2.86 0 0.00 18T3
..................................................TAATACTGTCTGGTAATGCCGa............ 37405_0_0_0_0_0_1 MATURE 1 1.14 0 0.00 1 1.89 21
...................................................AATACTGTCTGGTAATaCCGTa........... 12994_0_0_0_0_0_1 MATURE 1 1.14 0 0.00 1 1.89 16A4
..................................................TAATACTGTCTGGTAATtCCGT............ 43215_0_0_0_0_0_1 MATURE 1 1.14 0 0.00 1 1.89 17T4
..................................................TAATACTGTCTGGTAAaGCCG............. 3146_1_0_0_0_0_0 MATURE 1 1.14 1 2.86 0 0.00 16A4
..................................................TAATACTGTCTGGTAATaCCGa............ 29858_1_0_0_0_0_0 MATURE 1 1.14 1 2.86 0 0.00 17A3
..................................................TAATACTGTCTGGTAAcGCCGT............ 5086_0_0_0_0_0_1 MATURE 1 1.14 0 0.00 1 1.89 16C5
..................................................TAATACTGTCTGGTAATGaCGT............ 32246_0_0_0_0_0_1 MATURE 1 1.14 0 0.00 1 1.89 18A3
..................................................TAATACTGTCTGGTAATtCCGTa........... 4051_0_0_0_0_0_1 MATURE 1 1.14 0 0.00 1 1.89 17T4
..................................................TAATACTGTCTGGTAATaCCGTg........... 312_0_0_0_0_0_1 MATURE 1 1.14 0 0.00 1 1.89 17A4
..................................................TAATACTGTCTGGTAATGCCGg............ 22373_0_0_0_0_0_1 MATURE 1 1.14 0 0.00 1 1.89 21
..................................................TAATACTGTCTGGTAATGCaGTt........... 21761_0_0_0_0_0_1 MATURE 1 1.14 0 0.00 1 1.89 19A2
..................................................TAATACTGTCTGGTAgTGCCG............. 36134_0_0_0_0_0_1 MATURE 1 1.14 0 0.00 1 1.89 15G5
---------- ---------- ----------
88 35 53
(39.77) (60.23)
((( SUMMARY )))
-CAT- -REST- -ACT- -TOTAL- -TOTAL%-
---------- ---------- ---------- ---------- ----------
MATURE 35 53 88 100.00%
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35 53 88
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