[BEGIN]

REFERENCE HAIRPIN
*******************************************************************************************************
ID                 : mmu-mir-411
DESCRIPTION        : mmu-mir-411 MI0001163 Mus musculus miR-411 stem-loop
CHROMOSOME         : 12
SPAN               : 110948385 - 110948466
LENGTH             : 82
SEQUENCE           : TGGTACTTGGAGAGATAGTAGACCGTATAGCGTACGCTTTATCTGTGACGTATGTAACACGGTCCACTAACCCTCAGTATCA
OVERHANG THRESHOLD : 40%
*******************************************************************************************************


TARGET
******************************
CATEGORY   : MATURE
ID         : mmu-miR-411
ACCID      : MI0001163
PARENT     : mmu-mir-411
CHROMOSOME : 12
START      : 110948385
STOP       : 110948466
OFFSET     : 16..36
SEQUENCE   : TAGTAGACCGTATAGCGTACG
STRAND     : +
******************************


TARGET
******************************
CATEGORY   : MATURESTAR
ID         : mmu-miR-411*
ACCID      : MI0001163
PARENT     : mmu-mir-411
CHROMOSOME : 12
START      : 110948385
STOP       : 110948466
OFFSET     : 51..72
SEQUENCE   : TATGTAACACGGTCCACTAACC
STRAND     : +
******************************



*** MATURE ***
__________________________________________________________________________________
TGGTACTTGGAGAGATAGTAGACCGTATAGCGTACGCTTTATCTGTGACGTATGTAACACGGTCCACTAACCCTCAGTATCA REF                  12                   110948385 - 110948466 
               TAGTAGACCGTATAGCGTACG                                               MATURE               12                   110948401 - 110948502 mmu-miR-411          +                    
                                                  TATGTAACACGGTCCACTAACC           MATURESTAR           12                   110948436 - 110948538 mmu-miR-411*         +                    
__________________________________________________________________________________

                                                                              -SEQ-             -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
...............TAGTAGACCGTATAGCGTACGa..............................................   4410_1_0_0_0_0_0       MATURE            1       100.00            1       100.00            0            0                        21   
                                                                                                                      ----------                ----------                ----------   
                                                                                                                               1                         1                         0                                          
                                                                                                                                                  (100.00)                    (0.00)                                       




*** MATURESTAR ***
__________________________________________________________________________________
TGGTACTTGGAGAGATAGTAGACCGTATAGCGTACGCTTTATCTGTGACGTATGTAACACGGTCCACTAACCCTCAGTATCA REF                  12                   110948385 - 110948466 
               TAGTAGACCGTATAGCGTACG                                               MATURE               12                   110948401 - 110948502 mmu-miR-411          +                    
                                                  TATGTAACACGGTCCACTAACC           MATURESTAR           12                   110948436 - 110948538 mmu-miR-411*         +                    
__________________________________________________________________________________

                                                                              -SEQ-              -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
.......................................................AACACGGTCCACTAACCCTCAGT.....   33247_0_0_0_0_0_1   MATURESTAR            1       100.00            0            0            1       100.00                        23   
                                                                                                                       ----------                ----------                ----------   
                                                                                                                                1                         0                         1                                          
                                                                                                                                                     (0.00)                  (100.00)                                       




((( SUMMARY )))

          -CAT-          -REST-           -ACT-         -TOTAL-        -TOTAL%-
     ----------      ----------      ----------      ----------      ----------
         MATURE               1               0               1          50.00%
     MATURESTAR               0               1               1          50.00%
                     ----------      ----------      ----------                
                              1               1               2                



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