[BEGIN]

REFERENCE HAIRPIN
***************************************************************************************
ID                 : mmu-mir-378
DESCRIPTION        : mmu-mir-378 MI0000795 Mus musculus miR-378 stem-loop
CHROMOSOME         : 18
SPAN               : 61557489 - 61557554
LENGTH             : 66
SEQUENCE           : AGGGCTCCTGACTCCAGGTCCTGTGTGTTACCTCGAAATAGCACTGGACTTGGAGTCAGAAGGCCT
OVERHANG THRESHOLD : 40%
***************************************************************************************


TARGET
******************************
CATEGORY   : MATURE
ID         : mmu-miR-378
ACCID      : MI0000795
PARENT     : mmu-mir-378
CHROMOSOME : 18
START      : 61557489
STOP       : 61557554
OFFSET     : 43..63
SEQUENCE   : ACTGGACTTGGAGTCAGAAGG
STRAND     : -
******************************


TARGET
******************************
CATEGORY   : MATURESTAR
ID         : mmu-miR-378*
ACCID      : MI0000795
PARENT     : mmu-mir-378
CHROMOSOME : 18
START      : 61557489
STOP       : 61557554
OFFSET     : 5..26
SEQUENCE   : CTCCTGACTCCAGGTCCTGTGT
STRAND     : -
******************************



*** MATURE ***
__________________________________________________________________
AGGGCTCCTGACTCCAGGTCCTGTGTGTTACCTCGAAATAGCACTGGACTTGGAGTCAGAAGGCCT REF                  18                   61557489 - 61557554  
                                          ACTGGACTTGGAGTCAGAAGG    MATURE               18                   61557532 - 61557617  mmu-miR-378          -                    
    CTCCTGACTCCAGGTCCTGTGT                                         MATURESTAR           18                   61557494 - 61557580  mmu-miR-378*         -                    
__________________________________________________________________

                                                              -SEQ-                 -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
..........................................ACTGGACTTGGAGTCAGAAGG....   39505_92_0_0_0_0_210       MATURE          302        20.07           92        16.03          210        22.56                        21   
..........................................ACTGGACTTGGAGTCAGAAGGa...   26610_73_0_0_0_0_114       MATURE          187        12.43           73        12.72          114        12.24                        21   
..........................................ACTGGACTTGGAGTCAaAAGGC...   28893_60_0_0_0_0_114       MATURE          174        11.56           60        10.45          114        12.24                      16A5   
..........................................ACTGGACTTGGAGTCAGAAGGC...    43462_41_0_0_0_0_75       MATURE          116         7.71           41         7.14           75         8.06                        22   
..........................................ACTGGACTTGGAGTCAGAAGGt...    40893_50_0_0_0_0_54       MATURE          104         6.91           50         8.71           54         5.80                        21   
..........................................ACTGGACTTGGAGTCAcAAGGC...    42402_35_0_0_0_0_62       MATURE           97         6.45           35         6.10           62         6.66                      16C5   
..........................................ACTGGACTTGGAGTCAGAAGGCa..    39825_46_0_0_0_0_45       MATURE           91         6.05           46         8.01           45         4.83                        22   
..........................................ACTGGACTTGGAGTCAGAAGGCt..    36799_17_0_0_0_0_29       MATURE           46         3.06           17         2.96           29         3.11                        22   
..........................................ACTGGACTTGGAGTCAGAAGa....    17596_18_0_0_0_0_24       MATURE           42         2.79           18         3.14           24         2.58                        20   
..........................................ACTGGACTTGGAGTCAtAAGGC...    41225_12_0_0_0_0_18       MATURE           30         1.99           12         2.09           18         1.93                      16T5   
..........................................ACTGGACTTGGAGTCAcAAGGt...    32695_12_0_0_0_0_15       MATURE           27         1.79           12         2.09           15         1.61                      16C4   
..........................................ACTGGACTTGGAGTCAGAAGGCC..    31638_12_0_0_0_0_10       MATURE           22         1.46           12         2.09           10         1.07                        23   
..........................................ACTGGACTTGGAGTCAGAAG.....     43484_5_0_0_0_0_11       MATURE           16         1.06            5         0.87           11         1.18                        20   
..........................................ACTGGACTTGGAGTCAtAAGG....     39907_2_0_0_0_0_12       MATURE           14         0.93            2         0.35           12         1.29                      16T4   
..........................................ACTGGACTTGGAGTCAGAAGGCg..      35855_7_0_0_0_0_6       MATURE           13         0.86            7         1.22            6         0.64                        22   
..........................................ACTGGACTTGGAGTCAGAA......      21097_4_0_0_0_0_9       MATURE           13         0.86            4         0.70            9         0.97                        19   
..........................................ACTGGACTTGGAGTCAGAAGGg...     30747_1_0_0_0_0_12       MATURE           13         0.86            1         0.17           12         1.29                        21   
..........................................ACTGGACTTGGAGTCAGgAGG....      19323_6_0_0_0_0_7       MATURE           13         0.86            6         1.05            7         0.75                      17G3   
..........................................ACTGGACTTGGAGTCAGgAGGC...      40667_3_0_0_0_0_8       MATURE           11         0.73            3         0.52            8         0.86                      17G4   
..........................................ACTGGACTTGGAGTCAtAAGGa...      38118_4_0_0_0_0_5       MATURE            9         0.60            4         0.70            5         0.54                      16T4   
..........................................ACTGGACTTGGAGTCAGAAcGC...       5840_4_0_0_0_0_5       MATURE            9         0.60            4         0.70            5         0.54                      19C2   
..........................................ACTGGACTTGGAGTCAGAcGGCa..       9334_1_0_0_0_0_7       MATURE            8         0.53            1         0.17            7         0.75                      18C3   
..........................................ACTGGACTTGGAGTCAGAgGGCa..      17269_5_0_0_0_0_3       MATURE            8         0.53            5         0.87            3         0.32                      18G3   
..........................................ACTGGACTTGGAGTCAtAAGGt...      40082_3_0_0_0_0_4       MATURE            7         0.47            3         0.52            4         0.43                      16T4   
..........................................ACTGGACTTGGAGTCAGAgGGa...      39557_5_0_0_0_0_2       MATURE            7         0.47            5         0.87            2         0.21                      18G2   
..........................................ACTGGACTTGGAGTCAGAAcGCa..      42495_4_0_0_0_0_3       MATURE            7         0.47            4         0.70            3         0.32                      19C2   
..........................................ACTGGACTTGGAGTCAGAAGGaCT.      10963_1_0_0_0_0_5       MATURE            6         0.40            1         0.17            5         0.54                      21A2   
..........................................ACTGGACTTGGAGTCAGgAGGCa..      25384_1_0_0_0_0_5       MATURE            6         0.40            1         0.17            5         0.54                      17G4   
..........................................ACTGGACTTGGAGTCAcAAGG....      16327_4_0_0_0_0_2       MATURE            6         0.40            4         0.70            2         0.21                      16C4   
..........................................ACTGGACTTGGAGTCAGAcGGC...      38821_2_0_0_0_0_3       MATURE            5         0.33            2         0.35            3         0.32                      18C3   
..........................................ACTGGACTTGGAGTCAGAAtGC...      16428_2_0_0_0_0_2       MATURE            4         0.27            2         0.35            2         0.21                      19T2   
..........................................ACTGGACTTGGAGTCAGAgGGC...      30693_1_0_0_0_0_3       MATURE            4         0.27            1         0.17            3         0.32                      18G3   
..........................................ACTGGACTTGGAGTCAGgAGGt...      39093_2_0_0_0_0_2       MATURE            4         0.27            2         0.35            2         0.21                      17G3   
..........................................ACTGGACTTGGAGTCAGAgGGt...       1995_2_0_0_0_0_2       MATURE            4         0.27            2         0.35            2         0.21                      18G2   
..........................................ACTGGACTTGGAGTCAGAtGGC...      34899_2_0_0_0_0_2       MATURE            4         0.27            2         0.35            2         0.21                      18T3   
...........................................CTGGACTTGGAGTCAGAAGGa...      44118_4_0_0_0_0_0       MATURE            4         0.27            4         0.70            0         0.00                        20   
..........................................ACTGGACTTGGAGTCAGAAGGCCa.      26759_3_0_0_0_0_1       MATURE            4         0.27            3         0.52            1         0.11                        23   
..........................................ACTGGACTTGGAGTCAGAAtGCa..      37632_2_0_0_0_0_2       MATURE            4         0.27            2         0.35            2         0.21                      19T2   
..........................................ACTGGACTTGGAGTCAGAtGGCa..      12490_1_0_0_0_0_2       MATURE            3         0.20            1         0.17            2         0.21                      18T3   
..........................................ACTGGACTTGGAGTCAGcAGGC...      25250_1_0_0_0_0_2       MATURE            3         0.20            1         0.17            2         0.21                      17C4   
..........................................ACTGGACTTGGAGTCAGAcGG....      27465_2_0_0_0_0_1       MATURE            3         0.20            2         0.35            1         0.11                      18C2   
...........................................CTGGACTTGGAGTCAGAAGG....      16474_1_0_0_0_0_2       MATURE            3         0.20            1         0.17            2         0.21                        20   
..........................................ACTGGACTTGGAGTCAGAtGG....      31405_1_0_0_0_0_1       MATURE            2         0.13            1         0.17            1         0.11                      18T2   
..........................................ACTGGACTTGGAGTCAGAcGGt...      21089_0_0_0_0_0_2       MATURE            2         0.13            0         0.00            2         0.21                      18C2   
...........................................CTGGACTTGGAGTCAGAAGGCC..      44148_2_0_0_0_0_0       MATURE            2         0.13            2         0.35            0         0.00                        22   
..........................................ACTGGACTTGGAGTCAGAAGGtCT.      42149_1_0_0_0_0_1       MATURE            2         0.13            1         0.17            1         0.11                      21T2   
..........................................ACTGGACTTGGAGTCcGAAGG....      12441_0_0_0_0_0_2       MATURE            2         0.13            0         0.00            2         0.21                      15C5   
..........................................ACTGGACTTGGAGTCAGAAc.....      23007_1_0_0_0_0_1       MATURE            2         0.13            1         0.17            1         0.11                        19   
..........................................ACTGGACTTGGAGTCAGAAt.....      38091_0_0_0_0_0_2       MATURE            2         0.13            0         0.00            2         0.21                        19   
..........................................ACTGGACTTGGAGTCAGAgGGCt..      41850_1_0_0_0_0_1       MATURE            2         0.13            1         0.17            1         0.11                      18G3   
..........................................ACTGGACTTGGAGTCAGAgGG....       6826_1_0_0_0_0_1       MATURE            2         0.13            1         0.17            1         0.11                      18G2   
..........................................ACTGGACTTGGAGTCAGgAGGCt..      10432_1_0_0_0_0_1       MATURE            2         0.13            1         0.17            1         0.11                      17G4   
...........................................CTGGACTTGGAGTCAGAAGGC...      42748_1_0_0_0_0_1       MATURE            2         0.13            1         0.17            1         0.11                        21   
........................................GCgCTGGACTTGGAGTCAGAAGG....      15629_2_0_0_0_0_0       MATURE            2         0.13            2         0.35            0         0.00                      2G20   
........................................GCACTGGACTTGGAGTCAGAcGGC...      41312_0_0_0_0_0_1       MATURE            1         0.07            0         0.00            1         0.11                      20C3   
........................................GCgCTGGACTTGGAGTCAGAAGGCt..      37213_0_0_0_0_0_1       MATURE            1         0.07            0         0.00            1         0.11                      2G21   
..........................................ACTGGACTTGGAGTCAGAcGGCg..      17514_0_0_0_0_0_1       MATURE            1         0.07            0         0.00            1         0.11                      18C3   
........................................GCgCTGGACTTGGAGTCAGAAGGC...      13328_0_0_0_0_0_1       MATURE            1         0.07            0         0.00            1         0.11                      2G21   
..........................................ACTGGACTTGGAGTtAGAAGGC...      15045_1_0_0_0_0_0       MATURE            1         0.07            1         0.17            0         0.00                      14T7   
...........................................CTGGACTTGGAGTCAGAAGGt...      43578_0_0_0_0_0_1       MATURE            1         0.07            0         0.00            1         0.11                        20   
..........................................ACTGGACTTGGAGTCAGAAGGgCT.      12980_1_0_0_0_0_0       MATURE            1         0.07            1         0.17            0         0.00                      21G2   
..........................................ACTGGACTTGGAGTCgGAAGGC...       1274_0_0_0_0_0_1       MATURE            1         0.07            0         0.00            1         0.11                      15G6   
..........................................ACTtGACTTGGAGTCAGAAGGC...       5092_0_0_0_0_0_1       MATURE            1         0.07            0         0.00            1         0.11                      3T18   
..........................................ACTGGACTTGGAGTCAGAAtGCg..      26963_1_0_0_0_0_0       MATURE            1         0.07            1         0.17            0         0.00                      19T2   
..........................................ACTGGACTTGGAGTCAaAAGGCCT.      16512_1_0_0_0_0_0       MATURE            1         0.07            1         0.17            0         0.00                      16A7   
..........................................ACTGGACTTGGAGTCAGAAcGCt..      19629_1_0_0_0_0_0       MATURE            1         0.07            1         0.17            0         0.00                      19C2   
..........................................ACTGGACTTGGAGTCAGAcGGa...        519_0_0_0_0_0_1       MATURE            1         0.07            0         0.00            1         0.11                      18C2   
..........................................ACTGGACTTGGAGTCAGcAGGCa..      23660_0_0_0_0_0_1       MATURE            1         0.07            0         0.00            1         0.11                      17C4   
..........................................ACTGGACTTGGAGTtAGAAGG....      14375_0_0_0_0_0_1       MATURE            1         0.07            0         0.00            1         0.11                      14T6   
..........................................ACTGGACTTGGAGTCAGAAGGgCTt      14661_0_0_0_0_0_1       MATURE            1         0.07            0         0.00            1         0.11                      21G2   
..........................................ACTGGACTTGGgGTCAGAAGGt...      28272_1_0_0_0_0_0       MATURE            1         0.07            1         0.17            0         0.00                      11G9   
...........................................CTGGACTTGGAGTCAGAcGGC...      43263_1_0_0_0_0_0       MATURE            1         0.07            1         0.17            0         0.00                      17C3   
...........................................CTGGACTTGGAGTCAGAAGGCg..      24892_0_0_0_0_0_1       MATURE            1         0.07            0         0.00            1         0.11                        21   
.........................................CACTGGACTTGGAGTCAcAAGGC...      24135_1_0_0_0_0_0       MATURE            1         0.07            1         0.17            0         0.00                      17C5   
..........................................ACTGGACTTGGAGTCAGAtGGa...      14954_0_0_0_0_0_1       MATURE            1         0.07            0         0.00            1         0.11                      18T2   
.........................................CACTGGACTTGGAGTCAGAAGGCa..      27028_0_0_0_0_0_1       MATURE            1         0.07            0         0.00            1         0.11                        23   
.........................................CACTGGACTTGGAGTCAGAAGGC...      39026_0_0_0_0_0_1       MATURE            1         0.07            0         0.00            1         0.11                        23   
........................................GCtCTGGACTTGGAGTCAGAAGGCa..       9294_1_0_0_0_0_0       MATURE            1         0.07            1         0.17            0         0.00                      2T21   
...........................................CTGGACTTGGAGTCAtAAGGC...       1173_0_0_0_0_0_1       MATURE            1         0.07            0         0.00            1         0.11                      15T5   
...........................................CTGGACTTGGAGTCAcAAGGC...      31241_1_0_0_0_0_0       MATURE            1         0.07            1         0.17            0         0.00                      15C5   
...........................................CTGGACTTGGAGTCAGAAG.....       3205_0_0_0_0_0_1       MATURE            1         0.07            0         0.00            1         0.11                        19   
..........................................ACTGGACTTGGAGTCAGAAcGCC..      21249_0_0_0_0_0_1       MATURE            1         0.07            0         0.00            1         0.11                      19C3   
                                                                                                          ----------                ----------                ----------   
                                                                                                                1505                       574                       931                                          
                                                                                                                                       (38.14)                   (61.86)                                       




*** MATURESTAR ***
__________________________________________________________________
AGGGCTCCTGACTCCAGGTCCTGTGTGTTACCTCGAAATAGCACTGGACTTGGAGTCAGAAGGCCT REF                  18                   61557489 - 61557554  
                                          ACTGGACTTGGAGTCAGAAGG    MATURE               18                   61557532 - 61557617  mmu-miR-378          -                    
    CTCCTGACTCCAGGTCCTGTGT                                         MATURESTAR           18                   61557494 - 61557580  mmu-miR-378*         -                    
__________________________________________________________________

                                                              -SEQ-                -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
...GCTCCTGACTCCAGGTCCTGTGT.........................................   24443_93_0_0_0_0_97   MATURESTAR          190        46.80           93        47.94           97        45.75                        23   
...GCTCCTGACTCCAGGTCCTaTGT.........................................   37441_27_0_0_0_0_23   MATURESTAR           50        12.32           27        13.92           23        10.85                      19A3   
...GCTCCTGACTCCAGGTCCaGTGT.........................................   42148_18_0_0_0_0_23   MATURESTAR           41        10.10           18         9.28           23        10.85                      18A4   
...GCTCCTGACTCCAGGTCCcGTGT.........................................    43013_8_0_0_0_0_15   MATURESTAR           23         5.67            8         4.12           15         7.08                      18C4   
...GCTCCTGACTCCAGGTCCTGaGT.........................................   42602_10_0_0_0_0_10   MATURESTAR           20         4.93           10         5.15           10         4.72                      20A2   
...GCTCCTGACTCCAGGTCCTGTGc.........................................      3482_3_0_0_0_0_6   MATURESTAR            9         2.22            3         1.55            6         2.83                        22   
...GCTCCTGACTCCAGGTCaTGTGT.........................................     31053_4_0_0_0_0_4   MATURESTAR            8         1.97            4         2.06            4         1.89                      17A5   
...GCTCCTGACTCCAGGTCtTGTGT.........................................     22661_4_0_0_0_0_2   MATURESTAR            6         1.48            4         2.06            2         0.94                      17T5   
...GCTCCTGACTCCAGGTCCTGTGa.........................................     41291_3_0_0_0_0_3   MATURESTAR            6         1.48            3         1.55            3         1.42                        22   
...GCTCCTGACTCCAGGTCCTGTt..........................................     34425_4_0_0_0_0_1   MATURESTAR            5         1.23            4         2.06            1         0.47                        21   
...GCTCCTGACTCCAGGTCCTGcGT.........................................     18441_0_0_0_0_0_5   MATURESTAR            5         1.23            0         0.00            5         2.36                      20C2   
...GCTCCTGACTCCAGGTCCTGTGTa........................................     26735_3_0_0_0_0_1   MATURESTAR            4         0.99            3         1.55            1         0.47                        23   
...GCTCCTGACTCCAGGTCCTaTGa.........................................     36120_2_0_0_0_0_2   MATURESTAR            4         0.99            2         1.03            2         0.94                      19A2   
...GCTCCTGACTCCAGGTCCTGT...........................................     19090_1_0_0_0_0_3   MATURESTAR            4         0.99            1         0.52            3         1.42                        21   
...GCTCCTGACTCCAGGTCCTGTGTt........................................     16666_3_0_0_0_0_0   MATURESTAR            3         0.74            3         1.55            0         0.00                        23   
...GCTCCTGACTCCAGGTCCTaTGc.........................................     22228_0_0_0_0_0_2   MATURESTAR            2         0.49            0         0.00            2         0.94                      19A2   
...GCTCCTGACTCCAGGTCCcGTGTt........................................     35977_1_0_0_0_0_1   MATURESTAR            2         0.49            1         0.52            1         0.47                      18C4   
...GCTCCTGACTCCAGGTCCaGTGc.........................................     25609_0_0_0_0_0_2   MATURESTAR            2         0.49            0         0.00            2         0.94                      18A3   
...GCTCCTGACTCCAGGTCCTcTGT.........................................     11749_0_0_0_0_0_2   MATURESTAR            2         0.49            0         0.00            2         0.94                      19C3   
.....TCCTGACTCCAGGTCCTGTGT.........................................     31552_1_0_0_0_0_1   MATURESTAR            2         0.49            1         0.52            1         0.47                        21   
...GCTCCTGACTCCAGGTCCTGTa..........................................     28104_1_0_0_0_0_1   MATURESTAR            2         0.49            1         0.52            1         0.47                        21   
....CTCCTGACTCCAGGTCCTGTGTtTT......................................      1091_0_0_0_0_0_1   MATURESTAR            1         0.25            0         0.00            1         0.47                      22T2   
...GCTCCTGACTCCAGGTCgTGTGT.........................................     37707_0_0_0_0_0_1   MATURESTAR            1         0.25            0         0.00            1         0.47                      17G5   
...GCTCCTGACTCCAGGTCaTGTGa.........................................     19705_1_0_0_0_0_0   MATURESTAR            1         0.25            1         0.52            0         0.00                      17A4   
...GCTCCTGACTCCAGGTtCTGTGT.........................................     13167_1_0_0_0_0_0   MATURESTAR            1         0.25            1         0.52            0         0.00                      16T6   
...GCTCCTGACTCCAGGTCCcGTGa.........................................     23571_1_0_0_0_0_0   MATURESTAR            1         0.25            1         0.52            0         0.00                      18C3   
...GCTCCTGACTCCAGGTCCTaTGg.........................................     27013_1_0_0_0_0_0   MATURESTAR            1         0.25            1         0.52            0         0.00                      19A2   
..GGCTCCTGACTCCAGGTCCaGTGT.........................................     38687_0_0_0_0_0_1   MATURESTAR            1         0.25            0         0.00            1         0.47                      19A4   
.....TCCTGACTCCAGGTCCTaTGT.........................................     40901_0_0_0_0_0_1   MATURESTAR            1         0.25            0         0.00            1         0.47                      17A3   
...GCTCCTGACTCCAGGTCCgGTGT.........................................     15663_0_0_0_0_0_1   MATURESTAR            1         0.25            0         0.00            1         0.47                      18G4   
...GCTCCTGACTCCAGGTCCcGTG..........................................      5944_1_0_0_0_0_0   MATURESTAR            1         0.25            1         0.52            0         0.00                      18C3   
.....TCCTGACTCCAGGTCCaGTGT.........................................     13994_1_0_0_0_0_0   MATURESTAR            1         0.25            1         0.52            0         0.00                      16A4   
...GCTCCTGACTCCAGGTCtTGTGa.........................................     38863_1_0_0_0_0_0   MATURESTAR            1         0.25            1         0.52            0         0.00                      17T4   
....CTCCTGACTCCAGGTCCTGTGT.........................................     11197_0_0_0_0_0_1   MATURESTAR            1         0.25            0         0.00            1         0.47                        22   
....CTCCTGACTCCAGGTCCTaTGa.........................................     31891_0_0_0_0_0_1   MATURESTAR            1         0.25            0         0.00            1         0.47                      18A2   
...GCTCCTGACTCCAGGTCaTGT...........................................     25709_1_0_0_0_0_0   MATURESTAR            1         0.25            1         0.52            0         0.00                      17A3   
...GCTCCTGACTCCAGGTCCgGT...........................................     27957_0_0_0_0_0_1   MATURESTAR            1         0.25            0         0.00            1         0.47                      18G2   
                                                                                                         ----------                ----------                ----------   
                                                                                                                406                       194                       212                                          
                                                                                                                                      (47.78)                   (52.22)                                       




((( SUMMARY )))

          -CAT-          -REST-           -ACT-         -TOTAL-        -TOTAL%-
     ----------      ----------      ----------      ----------      ----------
         MATURE             574             931            1505          78.75%
     MATURESTAR             194             212             406          21.25%
                     ----------      ----------      ----------                
                            768            1143            1911                



[END]
