[BEGIN]
REFERENCE HAIRPIN
***************************************************************************************
ID : mmu-mir-378
DESCRIPTION : mmu-mir-378 MI0000795 Mus musculus miR-378 stem-loop
CHROMOSOME : 18
SPAN : 61557489 - 61557554
LENGTH : 66
SEQUENCE : AGGGCTCCTGACTCCAGGTCCTGTGTGTTACCTCGAAATAGCACTGGACTTGGAGTCAGAAGGCCT
OVERHANG THRESHOLD : 40%
***************************************************************************************
TARGET
******************************
CATEGORY : MATURE
ID : mmu-miR-378
ACCID : MI0000795
PARENT : mmu-mir-378
CHROMOSOME : 18
START : 61557489
STOP : 61557554
OFFSET : 43..63
SEQUENCE : ACTGGACTTGGAGTCAGAAGG
STRAND : -
******************************
TARGET
******************************
CATEGORY : MATURESTAR
ID : mmu-miR-378*
ACCID : MI0000795
PARENT : mmu-mir-378
CHROMOSOME : 18
START : 61557489
STOP : 61557554
OFFSET : 5..26
SEQUENCE : CTCCTGACTCCAGGTCCTGTGT
STRAND : -
******************************
*** MATURE ***
__________________________________________________________________
AGGGCTCCTGACTCCAGGTCCTGTGTGTTACCTCGAAATAGCACTGGACTTGGAGTCAGAAGGCCT REF 18 61557489 - 61557554
ACTGGACTTGGAGTCAGAAGG MATURE 18 61557532 - 61557617 mmu-miR-378 -
CTCCTGACTCCAGGTCCTGTGT MATURESTAR 18 61557494 - 61557580 mmu-miR-378* -
__________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
..........................................ACTGGACTTGGAGTCAGAAGG.... 39505_92_0_0_0_0_210 MATURE 302 20.07 92 16.03 210 22.56 21
..........................................ACTGGACTTGGAGTCAGAAGGa... 26610_73_0_0_0_0_114 MATURE 187 12.43 73 12.72 114 12.24 21
..........................................ACTGGACTTGGAGTCAaAAGGC... 28893_60_0_0_0_0_114 MATURE 174 11.56 60 10.45 114 12.24 16A5
..........................................ACTGGACTTGGAGTCAGAAGGC... 43462_41_0_0_0_0_75 MATURE 116 7.71 41 7.14 75 8.06 22
..........................................ACTGGACTTGGAGTCAGAAGGt... 40893_50_0_0_0_0_54 MATURE 104 6.91 50 8.71 54 5.80 21
..........................................ACTGGACTTGGAGTCAcAAGGC... 42402_35_0_0_0_0_62 MATURE 97 6.45 35 6.10 62 6.66 16C5
..........................................ACTGGACTTGGAGTCAGAAGGCa.. 39825_46_0_0_0_0_45 MATURE 91 6.05 46 8.01 45 4.83 22
..........................................ACTGGACTTGGAGTCAGAAGGCt.. 36799_17_0_0_0_0_29 MATURE 46 3.06 17 2.96 29 3.11 22
..........................................ACTGGACTTGGAGTCAGAAGa.... 17596_18_0_0_0_0_24 MATURE 42 2.79 18 3.14 24 2.58 20
..........................................ACTGGACTTGGAGTCAtAAGGC... 41225_12_0_0_0_0_18 MATURE 30 1.99 12 2.09 18 1.93 16T5
..........................................ACTGGACTTGGAGTCAcAAGGt... 32695_12_0_0_0_0_15 MATURE 27 1.79 12 2.09 15 1.61 16C4
..........................................ACTGGACTTGGAGTCAGAAGGCC.. 31638_12_0_0_0_0_10 MATURE 22 1.46 12 2.09 10 1.07 23
..........................................ACTGGACTTGGAGTCAGAAG..... 43484_5_0_0_0_0_11 MATURE 16 1.06 5 0.87 11 1.18 20
..........................................ACTGGACTTGGAGTCAtAAGG.... 39907_2_0_0_0_0_12 MATURE 14 0.93 2 0.35 12 1.29 16T4
..........................................ACTGGACTTGGAGTCAGAAGGCg.. 35855_7_0_0_0_0_6 MATURE 13 0.86 7 1.22 6 0.64 22
..........................................ACTGGACTTGGAGTCAGAA...... 21097_4_0_0_0_0_9 MATURE 13 0.86 4 0.70 9 0.97 19
..........................................ACTGGACTTGGAGTCAGAAGGg... 30747_1_0_0_0_0_12 MATURE 13 0.86 1 0.17 12 1.29 21
..........................................ACTGGACTTGGAGTCAGgAGG.... 19323_6_0_0_0_0_7 MATURE 13 0.86 6 1.05 7 0.75 17G3
..........................................ACTGGACTTGGAGTCAGgAGGC... 40667_3_0_0_0_0_8 MATURE 11 0.73 3 0.52 8 0.86 17G4
..........................................ACTGGACTTGGAGTCAtAAGGa... 38118_4_0_0_0_0_5 MATURE 9 0.60 4 0.70 5 0.54 16T4
..........................................ACTGGACTTGGAGTCAGAAcGC... 5840_4_0_0_0_0_5 MATURE 9 0.60 4 0.70 5 0.54 19C2
..........................................ACTGGACTTGGAGTCAGAcGGCa.. 9334_1_0_0_0_0_7 MATURE 8 0.53 1 0.17 7 0.75 18C3
..........................................ACTGGACTTGGAGTCAGAgGGCa.. 17269_5_0_0_0_0_3 MATURE 8 0.53 5 0.87 3 0.32 18G3
..........................................ACTGGACTTGGAGTCAtAAGGt... 40082_3_0_0_0_0_4 MATURE 7 0.47 3 0.52 4 0.43 16T4
..........................................ACTGGACTTGGAGTCAGAgGGa... 39557_5_0_0_0_0_2 MATURE 7 0.47 5 0.87 2 0.21 18G2
..........................................ACTGGACTTGGAGTCAGAAcGCa.. 42495_4_0_0_0_0_3 MATURE 7 0.47 4 0.70 3 0.32 19C2
..........................................ACTGGACTTGGAGTCAGAAGGaCT. 10963_1_0_0_0_0_5 MATURE 6 0.40 1 0.17 5 0.54 21A2
..........................................ACTGGACTTGGAGTCAGgAGGCa.. 25384_1_0_0_0_0_5 MATURE 6 0.40 1 0.17 5 0.54 17G4
..........................................ACTGGACTTGGAGTCAcAAGG.... 16327_4_0_0_0_0_2 MATURE 6 0.40 4 0.70 2 0.21 16C4
..........................................ACTGGACTTGGAGTCAGAcGGC... 38821_2_0_0_0_0_3 MATURE 5 0.33 2 0.35 3 0.32 18C3
..........................................ACTGGACTTGGAGTCAGAAtGC... 16428_2_0_0_0_0_2 MATURE 4 0.27 2 0.35 2 0.21 19T2
..........................................ACTGGACTTGGAGTCAGAgGGC... 30693_1_0_0_0_0_3 MATURE 4 0.27 1 0.17 3 0.32 18G3
..........................................ACTGGACTTGGAGTCAGgAGGt... 39093_2_0_0_0_0_2 MATURE 4 0.27 2 0.35 2 0.21 17G3
..........................................ACTGGACTTGGAGTCAGAgGGt... 1995_2_0_0_0_0_2 MATURE 4 0.27 2 0.35 2 0.21 18G2
..........................................ACTGGACTTGGAGTCAGAtGGC... 34899_2_0_0_0_0_2 MATURE 4 0.27 2 0.35 2 0.21 18T3
...........................................CTGGACTTGGAGTCAGAAGGa... 44118_4_0_0_0_0_0 MATURE 4 0.27 4 0.70 0 0.00 20
..........................................ACTGGACTTGGAGTCAGAAGGCCa. 26759_3_0_0_0_0_1 MATURE 4 0.27 3 0.52 1 0.11 23
..........................................ACTGGACTTGGAGTCAGAAtGCa.. 37632_2_0_0_0_0_2 MATURE 4 0.27 2 0.35 2 0.21 19T2
..........................................ACTGGACTTGGAGTCAGAtGGCa.. 12490_1_0_0_0_0_2 MATURE 3 0.20 1 0.17 2 0.21 18T3
..........................................ACTGGACTTGGAGTCAGcAGGC... 25250_1_0_0_0_0_2 MATURE 3 0.20 1 0.17 2 0.21 17C4
..........................................ACTGGACTTGGAGTCAGAcGG.... 27465_2_0_0_0_0_1 MATURE 3 0.20 2 0.35 1 0.11 18C2
...........................................CTGGACTTGGAGTCAGAAGG.... 16474_1_0_0_0_0_2 MATURE 3 0.20 1 0.17 2 0.21 20
..........................................ACTGGACTTGGAGTCAGAtGG.... 31405_1_0_0_0_0_1 MATURE 2 0.13 1 0.17 1 0.11 18T2
..........................................ACTGGACTTGGAGTCAGAcGGt... 21089_0_0_0_0_0_2 MATURE 2 0.13 0 0.00 2 0.21 18C2
...........................................CTGGACTTGGAGTCAGAAGGCC.. 44148_2_0_0_0_0_0 MATURE 2 0.13 2 0.35 0 0.00 22
..........................................ACTGGACTTGGAGTCAGAAGGtCT. 42149_1_0_0_0_0_1 MATURE 2 0.13 1 0.17 1 0.11 21T2
..........................................ACTGGACTTGGAGTCcGAAGG.... 12441_0_0_0_0_0_2 MATURE 2 0.13 0 0.00 2 0.21 15C5
..........................................ACTGGACTTGGAGTCAGAAc..... 23007_1_0_0_0_0_1 MATURE 2 0.13 1 0.17 1 0.11 19
..........................................ACTGGACTTGGAGTCAGAAt..... 38091_0_0_0_0_0_2 MATURE 2 0.13 0 0.00 2 0.21 19
..........................................ACTGGACTTGGAGTCAGAgGGCt.. 41850_1_0_0_0_0_1 MATURE 2 0.13 1 0.17 1 0.11 18G3
..........................................ACTGGACTTGGAGTCAGAgGG.... 6826_1_0_0_0_0_1 MATURE 2 0.13 1 0.17 1 0.11 18G2
..........................................ACTGGACTTGGAGTCAGgAGGCt.. 10432_1_0_0_0_0_1 MATURE 2 0.13 1 0.17 1 0.11 17G4
...........................................CTGGACTTGGAGTCAGAAGGC... 42748_1_0_0_0_0_1 MATURE 2 0.13 1 0.17 1 0.11 21
........................................GCgCTGGACTTGGAGTCAGAAGG.... 15629_2_0_0_0_0_0 MATURE 2 0.13 2 0.35 0 0.00 2G20
........................................GCACTGGACTTGGAGTCAGAcGGC... 41312_0_0_0_0_0_1 MATURE 1 0.07 0 0.00 1 0.11 20C3
........................................GCgCTGGACTTGGAGTCAGAAGGCt.. 37213_0_0_0_0_0_1 MATURE 1 0.07 0 0.00 1 0.11 2G21
..........................................ACTGGACTTGGAGTCAGAcGGCg.. 17514_0_0_0_0_0_1 MATURE 1 0.07 0 0.00 1 0.11 18C3
........................................GCgCTGGACTTGGAGTCAGAAGGC... 13328_0_0_0_0_0_1 MATURE 1 0.07 0 0.00 1 0.11 2G21
..........................................ACTGGACTTGGAGTtAGAAGGC... 15045_1_0_0_0_0_0 MATURE 1 0.07 1 0.17 0 0.00 14T7
...........................................CTGGACTTGGAGTCAGAAGGt... 43578_0_0_0_0_0_1 MATURE 1 0.07 0 0.00 1 0.11 20
..........................................ACTGGACTTGGAGTCAGAAGGgCT. 12980_1_0_0_0_0_0 MATURE 1 0.07 1 0.17 0 0.00 21G2
..........................................ACTGGACTTGGAGTCgGAAGGC... 1274_0_0_0_0_0_1 MATURE 1 0.07 0 0.00 1 0.11 15G6
..........................................ACTtGACTTGGAGTCAGAAGGC... 5092_0_0_0_0_0_1 MATURE 1 0.07 0 0.00 1 0.11 3T18
..........................................ACTGGACTTGGAGTCAGAAtGCg.. 26963_1_0_0_0_0_0 MATURE 1 0.07 1 0.17 0 0.00 19T2
..........................................ACTGGACTTGGAGTCAaAAGGCCT. 16512_1_0_0_0_0_0 MATURE 1 0.07 1 0.17 0 0.00 16A7
..........................................ACTGGACTTGGAGTCAGAAcGCt.. 19629_1_0_0_0_0_0 MATURE 1 0.07 1 0.17 0 0.00 19C2
..........................................ACTGGACTTGGAGTCAGAcGGa... 519_0_0_0_0_0_1 MATURE 1 0.07 0 0.00 1 0.11 18C2
..........................................ACTGGACTTGGAGTCAGcAGGCa.. 23660_0_0_0_0_0_1 MATURE 1 0.07 0 0.00 1 0.11 17C4
..........................................ACTGGACTTGGAGTtAGAAGG.... 14375_0_0_0_0_0_1 MATURE 1 0.07 0 0.00 1 0.11 14T6
..........................................ACTGGACTTGGAGTCAGAAGGgCTt 14661_0_0_0_0_0_1 MATURE 1 0.07 0 0.00 1 0.11 21G2
..........................................ACTGGACTTGGgGTCAGAAGGt... 28272_1_0_0_0_0_0 MATURE 1 0.07 1 0.17 0 0.00 11G9
...........................................CTGGACTTGGAGTCAGAcGGC... 43263_1_0_0_0_0_0 MATURE 1 0.07 1 0.17 0 0.00 17C3
...........................................CTGGACTTGGAGTCAGAAGGCg.. 24892_0_0_0_0_0_1 MATURE 1 0.07 0 0.00 1 0.11 21
.........................................CACTGGACTTGGAGTCAcAAGGC... 24135_1_0_0_0_0_0 MATURE 1 0.07 1 0.17 0 0.00 17C5
..........................................ACTGGACTTGGAGTCAGAtGGa... 14954_0_0_0_0_0_1 MATURE 1 0.07 0 0.00 1 0.11 18T2
.........................................CACTGGACTTGGAGTCAGAAGGCa.. 27028_0_0_0_0_0_1 MATURE 1 0.07 0 0.00 1 0.11 23
.........................................CACTGGACTTGGAGTCAGAAGGC... 39026_0_0_0_0_0_1 MATURE 1 0.07 0 0.00 1 0.11 23
........................................GCtCTGGACTTGGAGTCAGAAGGCa.. 9294_1_0_0_0_0_0 MATURE 1 0.07 1 0.17 0 0.00 2T21
...........................................CTGGACTTGGAGTCAtAAGGC... 1173_0_0_0_0_0_1 MATURE 1 0.07 0 0.00 1 0.11 15T5
...........................................CTGGACTTGGAGTCAcAAGGC... 31241_1_0_0_0_0_0 MATURE 1 0.07 1 0.17 0 0.00 15C5
...........................................CTGGACTTGGAGTCAGAAG..... 3205_0_0_0_0_0_1 MATURE 1 0.07 0 0.00 1 0.11 19
..........................................ACTGGACTTGGAGTCAGAAcGCC.. 21249_0_0_0_0_0_1 MATURE 1 0.07 0 0.00 1 0.11 19C3
---------- ---------- ----------
1505 574 931
(38.14) (61.86)
*** MATURESTAR ***
__________________________________________________________________
AGGGCTCCTGACTCCAGGTCCTGTGTGTTACCTCGAAATAGCACTGGACTTGGAGTCAGAAGGCCT REF 18 61557489 - 61557554
ACTGGACTTGGAGTCAGAAGG MATURE 18 61557532 - 61557617 mmu-miR-378 -
CTCCTGACTCCAGGTCCTGTGT MATURESTAR 18 61557494 - 61557580 mmu-miR-378* -
__________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
...GCTCCTGACTCCAGGTCCTGTGT......................................... 24443_93_0_0_0_0_97 MATURESTAR 190 46.80 93 47.94 97 45.75 23
...GCTCCTGACTCCAGGTCCTaTGT......................................... 37441_27_0_0_0_0_23 MATURESTAR 50 12.32 27 13.92 23 10.85 19A3
...GCTCCTGACTCCAGGTCCaGTGT......................................... 42148_18_0_0_0_0_23 MATURESTAR 41 10.10 18 9.28 23 10.85 18A4
...GCTCCTGACTCCAGGTCCcGTGT......................................... 43013_8_0_0_0_0_15 MATURESTAR 23 5.67 8 4.12 15 7.08 18C4
...GCTCCTGACTCCAGGTCCTGaGT......................................... 42602_10_0_0_0_0_10 MATURESTAR 20 4.93 10 5.15 10 4.72 20A2
...GCTCCTGACTCCAGGTCCTGTGc......................................... 3482_3_0_0_0_0_6 MATURESTAR 9 2.22 3 1.55 6 2.83 22
...GCTCCTGACTCCAGGTCaTGTGT......................................... 31053_4_0_0_0_0_4 MATURESTAR 8 1.97 4 2.06 4 1.89 17A5
...GCTCCTGACTCCAGGTCtTGTGT......................................... 22661_4_0_0_0_0_2 MATURESTAR 6 1.48 4 2.06 2 0.94 17T5
...GCTCCTGACTCCAGGTCCTGTGa......................................... 41291_3_0_0_0_0_3 MATURESTAR 6 1.48 3 1.55 3 1.42 22
...GCTCCTGACTCCAGGTCCTGTt.......................................... 34425_4_0_0_0_0_1 MATURESTAR 5 1.23 4 2.06 1 0.47 21
...GCTCCTGACTCCAGGTCCTGcGT......................................... 18441_0_0_0_0_0_5 MATURESTAR 5 1.23 0 0.00 5 2.36 20C2
...GCTCCTGACTCCAGGTCCTGTGTa........................................ 26735_3_0_0_0_0_1 MATURESTAR 4 0.99 3 1.55 1 0.47 23
...GCTCCTGACTCCAGGTCCTaTGa......................................... 36120_2_0_0_0_0_2 MATURESTAR 4 0.99 2 1.03 2 0.94 19A2
...GCTCCTGACTCCAGGTCCTGT........................................... 19090_1_0_0_0_0_3 MATURESTAR 4 0.99 1 0.52 3 1.42 21
...GCTCCTGACTCCAGGTCCTGTGTt........................................ 16666_3_0_0_0_0_0 MATURESTAR 3 0.74 3 1.55 0 0.00 23
...GCTCCTGACTCCAGGTCCTaTGc......................................... 22228_0_0_0_0_0_2 MATURESTAR 2 0.49 0 0.00 2 0.94 19A2
...GCTCCTGACTCCAGGTCCcGTGTt........................................ 35977_1_0_0_0_0_1 MATURESTAR 2 0.49 1 0.52 1 0.47 18C4
...GCTCCTGACTCCAGGTCCaGTGc......................................... 25609_0_0_0_0_0_2 MATURESTAR 2 0.49 0 0.00 2 0.94 18A3
...GCTCCTGACTCCAGGTCCTcTGT......................................... 11749_0_0_0_0_0_2 MATURESTAR 2 0.49 0 0.00 2 0.94 19C3
.....TCCTGACTCCAGGTCCTGTGT......................................... 31552_1_0_0_0_0_1 MATURESTAR 2 0.49 1 0.52 1 0.47 21
...GCTCCTGACTCCAGGTCCTGTa.......................................... 28104_1_0_0_0_0_1 MATURESTAR 2 0.49 1 0.52 1 0.47 21
....CTCCTGACTCCAGGTCCTGTGTtTT...................................... 1091_0_0_0_0_0_1 MATURESTAR 1 0.25 0 0.00 1 0.47 22T2
...GCTCCTGACTCCAGGTCgTGTGT......................................... 37707_0_0_0_0_0_1 MATURESTAR 1 0.25 0 0.00 1 0.47 17G5
...GCTCCTGACTCCAGGTCaTGTGa......................................... 19705_1_0_0_0_0_0 MATURESTAR 1 0.25 1 0.52 0 0.00 17A4
...GCTCCTGACTCCAGGTtCTGTGT......................................... 13167_1_0_0_0_0_0 MATURESTAR 1 0.25 1 0.52 0 0.00 16T6
...GCTCCTGACTCCAGGTCCcGTGa......................................... 23571_1_0_0_0_0_0 MATURESTAR 1 0.25 1 0.52 0 0.00 18C3
...GCTCCTGACTCCAGGTCCTaTGg......................................... 27013_1_0_0_0_0_0 MATURESTAR 1 0.25 1 0.52 0 0.00 19A2
..GGCTCCTGACTCCAGGTCCaGTGT......................................... 38687_0_0_0_0_0_1 MATURESTAR 1 0.25 0 0.00 1 0.47 19A4
.....TCCTGACTCCAGGTCCTaTGT......................................... 40901_0_0_0_0_0_1 MATURESTAR 1 0.25 0 0.00 1 0.47 17A3
...GCTCCTGACTCCAGGTCCgGTGT......................................... 15663_0_0_0_0_0_1 MATURESTAR 1 0.25 0 0.00 1 0.47 18G4
...GCTCCTGACTCCAGGTCCcGTG.......................................... 5944_1_0_0_0_0_0 MATURESTAR 1 0.25 1 0.52 0 0.00 18C3
.....TCCTGACTCCAGGTCCaGTGT......................................... 13994_1_0_0_0_0_0 MATURESTAR 1 0.25 1 0.52 0 0.00 16A4
...GCTCCTGACTCCAGGTCtTGTGa......................................... 38863_1_0_0_0_0_0 MATURESTAR 1 0.25 1 0.52 0 0.00 17T4
....CTCCTGACTCCAGGTCCTGTGT......................................... 11197_0_0_0_0_0_1 MATURESTAR 1 0.25 0 0.00 1 0.47 22
....CTCCTGACTCCAGGTCCTaTGa......................................... 31891_0_0_0_0_0_1 MATURESTAR 1 0.25 0 0.00 1 0.47 18A2
...GCTCCTGACTCCAGGTCaTGT........................................... 25709_1_0_0_0_0_0 MATURESTAR 1 0.25 1 0.52 0 0.00 17A3
...GCTCCTGACTCCAGGTCCgGT........................................... 27957_0_0_0_0_0_1 MATURESTAR 1 0.25 0 0.00 1 0.47 18G2
---------- ---------- ----------
406 194 212
(47.78) (52.22)
((( SUMMARY )))
-CAT- -REST- -ACT- -TOTAL- -TOTAL%-
---------- ---------- ---------- ---------- ----------
MATURE 574 931 1505 78.75%
MATURESTAR 194 212 406 21.25%
---------- ---------- ----------
768 1143 1911
[END]