[BEGIN]

REFERENCE HAIRPIN
************************************************************************************************
ID                 : mmu-mir-363
DESCRIPTION        : mmu-mir-363 MI0000765 Mus musculus miR-363 stem-loop
CHROMOSOME         : X
SPAN               : 50094870 - 50094944
LENGTH             : 75
SEQUENCE           : TGTTATCAGGTGGAACACGATGCAATTTTGGTTGGTGTAATAGGAGGAAAATTGCACGGTATCCATCTGTAAACC
OVERHANG THRESHOLD : 40%
************************************************************************************************


TARGET
******************************
CATEGORY   : MATURE
ID         : mmu-miR-363
ACCID      : MI0000765
PARENT     : mmu-mir-363
CHROMOSOME : X
START      : 50094870
STOP       : 50094944
OFFSET     : 50..71
SEQUENCE   : AATTGCACGGTATCCATCTGTA
STRAND     : -
******************************



*** MATURE ***
___________________________________________________________________________
TGTTATCAGGTGGAACACGATGCAATTTTGGTTGGTGTAATAGGAGGAAAATTGCACGGTATCCATCTGTAAACC REF                  X                    50094870 - 50094944  
                                                 AATTGCACGGTATCCATCTGTA     MATURE               X                    50094920 - 50095015  mmu-miR-363          -                    
___________________________________________________________________________

                                                                       -SEQ-              -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
..................................................ATTGCACGGTATCCATCTGTAt....   38994_7_0_0_0_0_7       MATURE           14        24.56            7        24.14            7        25.00                        21   
.................................................AATTGCACGGTATCCATCTGTAt....   16971_4_0_0_0_0_4       MATURE            8        14.04            4        13.79            4        14.29                        22   
..................................................ATTGCACGGTATCCATCaGTAt....   25468_3_0_0_0_0_1       MATURE            4         7.02            3        10.34            1         3.57                      17A3   
..................................................ATTGCACGGTATCCATCTGTAA....   13594_2_0_0_0_0_1       MATURE            3         5.26            2         6.90            1         3.57                        22   
.................................................AATTGCACGGTATCCATCTGTAc....   36647_2_0_0_0_0_0       MATURE            2         3.51            2         6.90            0         0.00                        22   
.................................................AATTGCACGGTATCCATtTGTAt....   42112_2_0_0_0_0_0       MATURE            2         3.51            2         6.90            0         0.00                      17T4   
..................................................ATTGCACGGTATCCATCcGTAt....   36853_1_0_0_0_0_1       MATURE            2         3.51            1         3.45            1         3.57                      17C3   
.................................................AATTGCACGGTATCCATCTGTAAA...   20013_0_0_0_0_0_1       MATURE            1         1.75            0         0.00            1         3.57                        24   
..................................................ATTGCACGGTATCCATCTGTAAA...   38089_1_0_0_0_0_0       MATURE            1         1.75            1         3.45            0         0.00                        23   
...............................................AAgATTGCACGGTATCCATCTGTAA....   14868_1_0_0_0_0_0       MATURE            1         1.75            1         3.45            0         0.00                      2G22   
..................................................ATTGCACGGTATCCATCTcTAt....   41199_0_0_0_0_0_1       MATURE            1         1.75            0         0.00            1         3.57                      18C2   
.................................................AATTGCACGGTATCCATaTGTA.....   25871_0_0_0_0_0_1       MATURE            1         1.75            0         0.00            1         3.57                      17A4   
..................................................ATTGCACGGTATCCATCTGa......   11618_0_0_0_0_0_1       MATURE            1         1.75            0         0.00            1         3.57                        19   
..................................................ATTGCACGGTATCCATCTaTAA....   23314_1_0_0_0_0_0       MATURE            1         1.75            1         3.45            0         0.00                      18A3   
.................................................AATTGCACGGTATCCATCTGTA.....   10641_0_0_0_0_0_1       MATURE            1         1.75            0         0.00            1         3.57                        22   
..................................................ATTGCACGGTATCCATCTGT......   14675_0_0_0_0_0_1       MATURE            1         1.75            0         0.00            1         3.57                        20   
...................................................TTGCACGGTATCCATCTGTAA....   41648_0_0_0_0_0_1       MATURE            1         1.75            0         0.00            1         3.57                        21   
.................................................AATTGCACGGTATCCAgCTGT......   41595_0_0_0_0_0_1       MATURE            1         1.75            0         0.00            1         3.57                      16G4   
...................................................TTGCACGGTATCCATCTGT......    6148_0_0_0_0_0_1       MATURE            1         1.75            0         0.00            1         3.57                        19   
..................................................ATTGCACGGTATCCATCgGTA.....   38142_0_0_0_0_0_1       MATURE            1         1.75            0         0.00            1         3.57                      17G3   
.................................................AATTGCACGGTATCCATCTGTAA....   37711_0_0_0_0_0_1       MATURE            1         1.75            0         0.00            1         3.57                        23   
.................................................AATTGCACGGTATCCATCaGT......   39153_0_0_0_0_0_1       MATURE            1         1.75            0         0.00            1         3.57                      18A2   
..................................................ATTGCACGGTATCCATCgGTAt....   28936_1_0_0_0_0_0       MATURE            1         1.75            1         3.45            0         0.00                      17G3   
.................................................AATTGCACGGTATCCATCTGT......   10891_1_0_0_0_0_0       MATURE            1         1.75            1         3.45            0         0.00                        21   
...................................................TTGCACGGTATCCATCTGTAc....   43789_0_0_0_0_0_1       MATURE            1         1.75            0         0.00            1         3.57                        20   
..................................................ATTGCACGGTATCCATCTGTA.....    2738_1_0_0_0_0_0       MATURE            1         1.75            1         3.45            0         0.00                        21   
.................................................AATTGCACGGTATCCATtTGTAA....    7669_1_0_0_0_0_0       MATURE            1         1.75            1         3.45            0         0.00                      17T5   
.................................................AATTGCACGGTATCCATCTGcAA....   14181_1_0_0_0_0_0       MATURE            1         1.75            1         3.45            0         0.00                      20C2   
.................................................AATTGCACGGTATCCATCaGTAt....   13911_0_0_0_0_0_1       MATURE            1         1.75            0         0.00            1         3.57                      18A3   
                                                                                                                ----------                ----------                ----------   
                                                                                                                        57                        29                        28                                          
                                                                                                                                             (50.88)                   (49.12)                                       




*** OTHER ***
___________________________________________________________________________
TGTTATCAGGTGGAACACGATGCAATTTTGGTTGGTGTAATAGGAGGAAAATTGCACGGTATCCATCTGTAAACC REF                  X                    50094870 - 50094944  
                                                 AATTGCACGGTATCCATCTGTA     MATURE               X                    50094920 - 50095015  mmu-miR-363          -                    
___________________________________________________________________________

                                                                       -SEQ-              -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
......CAGGTGGAACACGATGCAATTTT...............................................   35793_0_0_0_0_0_1        OTHER            1       100.00            0            0            1       100.00                        23   
                                                                                                                ----------                ----------                ----------   
                                                                                                                         1                         0                         1                                          
                                                                                                                                              (0.00)                  (100.00)                                       




((( SUMMARY )))

          -CAT-          -REST-           -ACT-         -TOTAL-        -TOTAL%-
     ----------      ----------      ----------      ----------      ----------
         MATURE              29              28              57          98.28%
          OTHER               0               1               1           1.72%
                     ----------      ----------      ----------                
                             29              29              58                



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