[BEGIN]
REFERENCE HAIRPIN
*******************************************************************************************
ID : mmu-mir-361
DESCRIPTION : mmu-mir-361 MI0000761 Mus musculus miR-361 stem-loop
CHROMOSOME : X
SPAN : 110188433 - 110188502
LENGTH : 70
SEQUENCE : GAAGCTTATCAGAATCTCCAGGGGTACTTAGTATTTGAAAAGTCCCCCAGGTGTGATTCTGATTTGTTTC
OVERHANG THRESHOLD : 40%
*******************************************************************************************
TARGET
******************************
CATEGORY : MATURE
ID : mmu-miR-361
ACCID : MI0000761
PARENT : mmu-mir-361
CHROMOSOME : X
START : 110188433
STOP : 110188502
OFFSET : 6..27
SEQUENCE : TTATCAGAATCTCCAGGGGTAC
STRAND : -
******************************
*** MATURE ***
______________________________________________________________________
GAAGCTTATCAGAATCTCCAGGGGTACTTAGTATTTGAAAAGTCCCCCAGGTGTGATTCTGATTTGTTTC REF X 110188433 - 110188502
TTATCAGAATCTCCAGGGGTAC MATURE X 110188439 - 110188529 mmu-miR-361 -
______________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
.....TTATCAGAATCTCCAGaGGTAC............................................ 27658_61_0_0_0_0_85 MATURE 146 15.19 61 15.76 85 14.81 16A5
.....TTATCAGAATCTCCAGGGGTAt............................................ 37291_29_0_0_0_0_69 MATURE 98 10.20 29 7.49 69 12.02 21
.....TTATCAGAATCTCCAGtGGTAC............................................ 35937_43_0_0_0_0_43 MATURE 86 8.95 43 11.11 43 7.49 16T5
.....TTATCAGAATCTCCAGGaGTAC............................................ 40856_32_0_0_0_0_40 MATURE 72 7.49 32 8.27 40 6.97 17A4
.....TTATCAGAATCTCCAGGGGTAC............................................ 37465_27_0_0_0_0_43 MATURE 70 7.28 27 6.98 43 7.49 22
.....TTATCAGAATCTCCAGcGGTAC............................................ 39272_18_0_0_0_0_39 MATURE 57 5.93 18 4.65 39 6.79 16C5
.....TTATCAGAATCTCCAGGaGTAt............................................ 43909_16_0_0_0_0_26 MATURE 42 4.37 16 4.13 26 4.53 17A3
.....TTATCAGAATCTCCAGGGGTACa........................................... 35329_13_0_0_0_0_23 MATURE 36 3.75 13 3.36 23 4.01 22
.....TTATCAGAATCTCCAGcGGTAt............................................ 26788_11_0_0_0_0_17 MATURE 28 2.91 11 2.84 17 2.96 16C4
.....TTATCAGAATCTCCAGGGGTAa............................................ 28260_6_0_0_0_0_15 MATURE 21 2.19 6 1.55 15 2.61 21
.....TTATCAGAATCTCCAGGaGTAa............................................ 41022_4_0_0_0_0_16 MATURE 20 2.08 4 1.03 16 2.79 17A3
.....TTATCAGAATCTCCAGaGGTAa............................................ 44201_5_0_0_0_0_11 MATURE 16 1.66 5 1.29 11 1.92 16A4
.....TTATCAGAATCTCCAGtGGTAt............................................ 12148_4_0_0_0_0_11 MATURE 15 1.56 4 1.03 11 1.92 16T4
.....TTATCAGAATCTCCAGGtGTAC............................................ 23750_5_0_0_0_0_9 MATURE 14 1.46 5 1.29 9 1.57 17T4
.....TTATCAGAATCTCCAGGGGTACT........................................... 41350_5_0_0_0_0_8 MATURE 13 1.35 5 1.29 8 1.39 23
.....TTATCAGAATCTCCAGGGtTAC............................................ 30079_5_0_0_0_0_6 MATURE 11 1.14 5 1.29 6 1.05 18T3
.....TTATCAGAATCTCCAGGGGaAC............................................ 43280_6_0_0_0_0_4 MATURE 10 1.04 6 1.55 4 0.70 19A2
.....TTATCAGAATCTCCAGGGaTAC............................................ 40212_2_0_0_0_0_8 MATURE 10 1.04 2 0.52 8 1.39 18A3
.....TTATCAGAATCTCCAGcGGTAa............................................ 44184_1_0_0_0_0_9 MATURE 10 1.04 1 0.26 9 1.57 16C4
.....TTATCAGAATCTCCAGGGGTACg........................................... 37249_3_0_0_0_0_7 MATURE 10 1.04 3 0.78 7 1.22 22
.....TTATCAGAATCTCCAGGaGTACa........................................... 33455_4_0_0_0_0_5 MATURE 9 0.94 4 1.03 5 0.87 17A4
......TATCAGAATCTCCAGaGGTAC............................................ 43756_4_0_0_0_0_4 MATURE 8 0.83 4 1.03 4 0.70 15A5
.....TTATCAGAATCTCCAGGGcTAt............................................ 34521_3_0_0_0_0_5 MATURE 8 0.83 3 0.78 5 0.87 18C2
.....TTATCAGAATCTCCAGGaGTACT........................................... 35508_2_0_0_0_0_3 MATURE 5 0.52 2 0.52 3 0.52 17A5
.....TTATCAGAATCTCCAGGGGTACTT.......................................... 20451_3_0_0_0_0_2 MATURE 5 0.52 3 0.78 2 0.35 24
.....TTATCAGAATCTCCAGGGGTACc........................................... 6319_2_0_0_0_0_3 MATURE 5 0.52 2 0.52 3 0.52 22
......TATCAGAATCTCCAGcGGTAC............................................ 21030_1_0_0_0_0_4 MATURE 5 0.52 1 0.26 4 0.70 15C5
.....TTATCAGAATCTCCAGGcGTAt............................................ 41897_1_0_0_0_0_4 MATURE 5 0.52 1 0.26 4 0.70 17C3
.....TTATgAGAATCTCCAGGGGTAt............................................ 24810_5_0_0_0_0_0 MATURE 5 0.52 5 1.29 0 0.00 4G16
......TATCAGAATCTCCAGtGGTAC............................................ 28479_1_0_0_0_0_4 MATURE 5 0.52 1 0.26 4 0.70 15T5
.....TTATCAGAATCTCCAGGGGTACTa.......................................... 16928_4_0_0_0_0_1 MATURE 5 0.52 4 1.03 1 0.17 23
.....TTATCAGAATCTCCAGGcGTAC............................................ 36932_3_0_0_0_0_1 MATURE 4 0.42 3 0.78 1 0.17 17C4
.....TTATCAGAATCTCCAGGGtTAt............................................ 30977_1_0_0_0_0_3 MATURE 4 0.42 1 0.26 3 0.52 18T2
.....TTATCAGAATCTCCAGGGcTACg........................................... 28714_2_0_0_0_0_1 MATURE 3 0.31 2 0.52 1 0.17 18C3
....CTTATCAGAATCTCCAGGGGTAC............................................ 21119_2_0_0_0_0_1 MATURE 3 0.31 2 0.52 1 0.17 23
....CTTATCAGAATCTCCAGGGGTAt............................................ 35327_3_0_0_0_0_0 MATURE 3 0.31 3 0.78 0 0.00 22
.....TTAaCAGAATCTCCAGGGGTACT........................................... 32490_3_0_0_0_0_0 MATURE 3 0.31 3 0.78 0 0.00 3A19
.....TTATCAGAATCTCCAGGGcTAa............................................ 40074_1_0_0_0_0_2 MATURE 3 0.31 1 0.26 2 0.35 18C2
.....TTATCAGAATCTCCAGGGGTAtTT.......................................... 10793_2_0_0_0_0_1 MATURE 3 0.31 2 0.52 1 0.17 21T2
.....TTATCAGAATCTCCAGGGcTAC............................................ 26762_2_0_0_0_0_1 MATURE 3 0.31 2 0.52 1 0.17 18C3
.....TTATCAGAATCTCCAGGGGTACaTA......................................... 9481_1_0_0_0_0_2 MATURE 3 0.31 1 0.26 2 0.35 22A2
.....TTATCAGAATCTCCAGGGGTACTg.......................................... 41063_0_0_0_0_0_2 MATURE 2 0.21 0 0.00 2 0.35 23
..AGCTTATCAGAATCTCCAGGGaTAt............................................ 21941_2_0_0_0_0_0 MATURE 2 0.21 2 0.52 0 0.00 21A2
......TATCAGAATCTCCAGGGGTAC............................................ 25859_1_0_0_0_0_1 MATURE 2 0.21 1 0.26 1 0.17 21
.....TTATCAGAATCTCCAGGcGTACa........................................... 8213_1_0_0_0_0_1 MATURE 2 0.21 1 0.26 1 0.17 17C4
....CTTATgAGAATCTCCAGGGGTAC............................................ 7166_2_0_0_0_0_0 MATURE 2 0.21 2 0.52 0 0.00 5G17
.....TTATCAGAATCTCCAGGaGTAg............................................ 25208_2_0_0_0_0_0 MATURE 2 0.21 2 0.52 0 0.00 17A3
.....TTATCAGAATCTCCAGGcGTACT........................................... 23751_2_0_0_0_0_0 MATURE 2 0.21 2 0.52 0 0.00 17C5
.....TTAaCAGAATCTCCAGGGGTACa........................................... 13896_2_0_0_0_0_0 MATURE 2 0.21 2 0.52 0 0.00 3A18
.....TTATCAGAATCTCCAGGGcTACT........................................... 15557_0_0_0_0_0_2 MATURE 2 0.21 0 0.00 2 0.35 18C4
...GCTTATCAGAATCTCCAGGGGTACg........................................... 11630_1_0_0_0_0_1 MATURE 2 0.21 1 0.26 1 0.17 24
....CTTATCAGAATCTCCAGGGGTACa........................................... 26086_1_0_0_0_0_1 MATURE 2 0.21 1 0.26 1 0.17 23
.....TTATgAGAATCTCCAGGGGTAa............................................ 20158_1_0_0_0_0_1 MATURE 2 0.21 1 0.26 1 0.17 4G16
.....TTATCAGAATCTCCAGGcGTACc........................................... 29267_2_0_0_0_0_0 MATURE 2 0.21 2 0.52 0 0.00 17C4
.....TTATCAGAATCTCCAGGtGTACg........................................... 1429_0_0_0_0_0_2 MATURE 2 0.21 0 0.00 2 0.35 17T4
.....TTAaCAGAATCTCCAGGGGTAt............................................ 25142_0_0_0_0_0_2 MATURE 2 0.21 0 0.00 2 0.35 3A17
....CTTATCAGAATCTCCAGGGGTACg........................................... 6684_1_0_0_0_0_1 MATURE 2 0.21 1 0.26 1 0.17 23
....CTTATCAGAATCTCCAGGaGTACa........................................... 44048_0_0_0_0_0_1 MATURE 1 0.10 0 0.00 1 0.17 18A4
.....TTAaCAGAATCTCCAGGGGTACTTt......................................... 32343_1_0_0_0_0_0 MATURE 1 0.10 1 0.26 0 0.00 3A20
....CTTATCAGAATCTCCAGGGtTAC............................................ 14052_1_0_0_0_0_0 MATURE 1 0.10 1 0.26 0 0.00 19T3
..AGgTTATCAGAATCTCCAGGGGTAt............................................ 18184_0_0_0_0_0_1 MATURE 1 0.10 0 0.00 1 0.17 2G21
....CTTATgAGAATCTCCAGGGGTAt............................................ 8786_1_0_0_0_0_0 MATURE 1 0.10 1 0.26 0 0.00 5G16
.....TTATCAGAATCTCCAGGcGTAg............................................ 30351_0_0_0_0_0_1 MATURE 1 0.10 0 0.00 1 0.17 17C3
......TAaCAGAATCTCCAGGGGTAC............................................ 24880_0_0_0_0_0_1 MATURE 1 0.10 0 0.00 1 0.17 2A18
.....TTATCAGAATCTCCAGGGGTAaTT.......................................... 37868_1_0_0_0_0_0 MATURE 1 0.10 1 0.26 0 0.00 21A2
.....TTATCAGAATCTCCAGGGGTACTTc......................................... 20561_1_0_0_0_0_0 MATURE 1 0.10 1 0.26 0 0.00 24
.....TTATCAGAATCTCCAGtGGTAa............................................ 39404_0_0_0_0_0_1 MATURE 1 0.10 0 0.00 1 0.17 16T4
.....TTATCAGAATCTCCAGGGGTA............................................. 10979_0_0_0_0_0_1 MATURE 1 0.10 0 0.00 1 0.17 21
.....TTATCAGAATCTCCAGGGaTACT........................................... 16470_1_0_0_0_0_0 MATURE 1 0.10 1 0.26 0 0.00 18A4
.....TTATCAGAATCTCCAGGaGTACg........................................... 20977_1_0_0_0_0_0 MATURE 1 0.10 1 0.26 0 0.00 17A4
.....TTATtAGAATCTCCAGGGGTAt............................................ 34847_0_0_0_0_0_1 MATURE 1 0.10 0 0.00 1 0.17 4T16
.....TTATgAGAATCTCCAGGGGTAC............................................ 39437_1_0_0_0_0_0 MATURE 1 0.10 1 0.26 0 0.00 4G17
.....TTATCAGAATCTCCAGGGGTACTc.......................................... 36803_0_0_0_0_0_1 MATURE 1 0.10 0 0.00 1 0.17 23
...GCTTATgAGAATCTCCAGGGGTAt............................................ 2462_1_0_0_0_0_0 MATURE 1 0.10 1 0.26 0 0.00 6G16
.....TTATCAGAATCTCCAGGGcTACTc.......................................... 32986_1_0_0_0_0_0 MATURE 1 0.10 1 0.26 0 0.00 18C4
.....TTATCAGAATCTCCAGaGGTAg............................................ 621_1_0_0_0_0_0 MATURE 1 0.10 1 0.26 0 0.00 16A4
.....TTATgAGAATCTCCAGGGGTACT........................................... 12460_0_0_0_0_0_1 MATURE 1 0.10 0 0.00 1 0.17 4G18
.....TTATCAGAATCTCCAGGGcTACa........................................... 19531_1_0_0_0_0_0 MATURE 1 0.10 1 0.26 0 0.00 18C3
.....TTATCAGAATCTCCAGGGGTgCT........................................... 36525_0_0_0_0_0_1 MATURE 1 0.10 0 0.00 1 0.17 20G2
.....TTATCAGAATCTCCAGaGGTACT........................................... 25391_1_0_0_0_0_0 MATURE 1 0.10 1 0.26 0 0.00 16A6
.....TTATCAGAATCTCCAGGGGaACTT.......................................... 19494_1_0_0_0_0_0 MATURE 1 0.10 1 0.26 0 0.00 19A4
.....TTATCAGAATCTCCAaGGGTAC............................................ 30654_0_0_0_0_0_1 MATURE 1 0.10 0 0.00 1 0.17 15A6
......TATCAGAATCTCCAGGGtTAC............................................ 23544_0_0_0_0_0_1 MATURE 1 0.10 0 0.00 1 0.17 17T3
.....TTATCAGAATCTCCAGGaGTACc........................................... 20641_0_0_0_0_0_1 MATURE 1 0.10 0 0.00 1 0.17 17A4
...GCTTATCAGAATCTCCAGGGaTAC............................................ 34014_1_0_0_0_0_0 MATURE 1 0.10 1 0.26 0 0.00 20A3
.....TTATCAGAATCTCCAGGcGTAa............................................ 32288_0_0_0_0_0_1 MATURE 1 0.10 0 0.00 1 0.17 17C3
.......ATCAGAATCTCCAGGGGTAt............................................ 1344_1_0_0_0_0_0 MATURE 1 0.10 1 0.26 0 0.00 19
....CTTATCAGAATCTCCAGGtGTAt............................................ 41615_1_0_0_0_0_0 MATURE 1 0.10 1 0.26 0 0.00 18T3
......TATCAGAATCTCCAGGGGTACT........................................... 39286_0_0_0_0_0_1 MATURE 1 0.10 0 0.00 1 0.17 22
.....TTATCAGAATCTCCAGGtGTACT........................................... 8347_0_0_0_0_0_1 MATURE 1 0.10 0 0.00 1 0.17 17T5
.....TTATCAGAATCTCCAaGGGTA............................................. 44292_0_0_0_0_0_1 MATURE 1 0.10 0 0.00 1 0.17 15A5
.....TTAcCAGAATCTCCAGGGGTACTT.......................................... 10935_0_0_0_0_0_1 MATURE 1 0.10 0 0.00 1 0.17 3C20
...GCTTATCAGAATCTCCAGaGGTAt............................................ 13886_1_0_0_0_0_0 MATURE 1 0.10 1 0.26 0 0.00 18A4
.....TTATCAGAATCTCtAGGGGTAt............................................ 43887_0_0_0_0_0_1 MATURE 1 0.10 0 0.00 1 0.17 13T7
.....TTATCAGAATCTCCAGGGGTACcTA......................................... 15670_1_0_0_0_0_0 MATURE 1 0.10 1 0.26 0 0.00 22C2
......TATCAGAATCTCCAGGGGTAt............................................ 43554_0_0_0_0_0_1 MATURE 1 0.10 0 0.00 1 0.17 20
......TATCAGAATCTCCAGGGGTAtTTAt........................................ 15761_0_0_0_0_0_1 MATURE 1 0.10 0 0.00 1 0.17 20T3
....CTTATgAGAATCTCCAGGGGTAa............................................ 2246_1_0_0_0_0_0 MATURE 1 0.10 1 0.26 0 0.00 5G16
.....TTAaCAGAATCTCCAGGGGTACc........................................... 18339_1_0_0_0_0_0 MATURE 1 0.10 1 0.26 0 0.00 3A18
.....TTATCAGAATCTCCAGGGGTAgTT.......................................... 40706_0_0_0_0_0_1 MATURE 1 0.10 0 0.00 1 0.17 21G2
.....TTATCAGAATCTCCAGcGGTAg............................................ 13593_0_0_0_0_0_1 MATURE 1 0.10 0 0.00 1 0.17 16C4
...GCTTATCAGAATCTCCAGGGGTACa........................................... 41745_1_0_0_0_0_0 MATURE 1 0.10 1 0.26 0 0.00 24
.....TTAaCAGAATCTCCAGGGGTACg........................................... 26720_1_0_0_0_0_0 MATURE 1 0.10 1 0.26 0 0.00 3A18
....CTTATgAGAATCTCCAGGGGTACT........................................... 1895_0_0_0_0_0_1 MATURE 1 0.10 0 0.00 1 0.17 5G18
---------- ---------- ----------
961 387 574
(40.27) (59.73)
*** OTHER ***
______________________________________________________________________
GAAGCTTATCAGAATCTCCAGGGGTACTTAGTATTTGAAAAGTCCCCCAGGTGTGATTCTGATTTGTTTC REF X 110188433 - 110188502
TTATCAGAATCTCCAGGGGTAC MATURE X 110188439 - 110188529 mmu-miR-361 -
______________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
...........................................CCCCCAGGTGTGATTCTGAaTTGT.... 5521_2_0_0_0_0_0 OTHER 2 25.00 2 50.00 0 0.00 19A4
...........................................CCCCCAGGTGTGATTCTGATTTa..... 20162_1_0_0_0_0_0 OTHER 1 12.50 1 25.00 0 0.00 22
..........................................TCtCCCAGGTGTGATTCTGATTTGT.... 21957_1_0_0_0_0_0 OTHER 1 12.50 1 25.00 0 0.00 2T22
..............................................CCAGGTGTGATTCTGATTTGT.... 17632_0_0_0_0_0_1 OTHER 1 12.50 0 0.00 1 25.00 21
...........................................CCaCCAGGTGTGATTCTGATTTGT.... 23438_0_0_0_0_0_1 OTHER 1 12.50 0 0.00 1 25.00 2A21
.............................................CCCAGGTGTGATTCTGATT....... 2942_0_0_0_0_0_1 OTHER 1 12.50 0 0.00 1 25.00 19
.............................................CCCAGGTGTGATTCTGATTTG..... 31128_0_0_0_0_0_1 OTHER 1 12.50 0 0.00 1 25.00 21
---------- ---------- ----------
8 4 4
(50.00) (50.00)
((( SUMMARY )))
-CAT- -REST- -ACT- -TOTAL- -TOTAL%-
---------- ---------- ---------- ---------- ----------
MATURE 387 574 961 99.17%
OTHER 4 4 8 0.83%
---------- ---------- ----------
391 578 969
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