[BEGIN]

REFERENCE HAIRPIN
************************************************************************************************************************
ID                 : mmu-mir-351
DESCRIPTION        : mmu-mir-351 MI0000643 Mus musculus miR-351 stem-loop
CHROMOSOME         : X
SPAN               : 50406432 - 50406530
LENGTH             : 99
SEQUENCE           : CATGGCACCTCCGTTTCCCTGAGGAGCCCTTTGAGCCTGGAGTGAAAAAAAAAAACAGGTCAAGAGGCGCCTGGGAACTGGAGAAGAGTGTTAAACTTC
OVERHANG THRESHOLD : 40%
************************************************************************************************************************


TARGET
******************************
CATEGORY   : MATURE
ID         : mmu-miR-351
ACCID      : MI0000643
PARENT     : mmu-mir-351
CHROMOSOME : X
START      : 50406432
STOP       : 50406530
OFFSET     : 16..39
SEQUENCE   : TCCCTGAGGAGCCCTTTGAGCCTG
STRAND     : -
******************************



*** MATURE ***
___________________________________________________________________________________________________
CATGGCACCTCCGTTTCCCTGAGGAGCCCTTTGAGCCTGGAGTGAAAAAAAAAAACAGGTCAAGAGGCGCCTGGGAACTGGAGAAGAGTGTTAAACTTC REF                  X                    50406432 - 50406530  
               TCCCTGAGGAGCCCTTTGAGCCTG                                                             MATURE               X                    50406448 - 50406569  mmu-miR-351          -                    
___________________________________________________________________________________________________

                                                                                               -SEQ-                 -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
...............TCCCTGAGGAGCCCTTTGAaCCTGt............................................................       3629_4_0_0_0_0_6       MATURE           10        12.35            4        10.81            6        13.64                      19A4   
...............TCCCTGAGGAGCCCTTTGAtCCTGt............................................................      13814_4_0_0_0_0_3       MATURE            7         8.64            4        10.81            3         6.82                      19T4   
...............TCCCTGAGGAGCCCTTTGAGCCa..............................................................      23220_2_0_0_0_0_4       MATURE            6         7.41            2         5.41            4         9.09                        22   
...............TCCCTGAGGAGCCCTTTGAGCCTGt............................................................      29043_3_0_0_0_0_3       MATURE            6         7.41            3         8.11            3         6.82                        24   
...............TCCCTGAGGAGCCCTTTGAG.................................................................      37745_2_0_0_0_0_3       MATURE            5         6.17            2         5.41            3         6.82                        20   
...............TCCCTGAGGAGCCCTTTGAaCCTG.............................................................      34090_2_0_0_0_0_2       MATURE            4         4.94            2         5.41            2         4.55                      19A4   
...............TCCCTGAGGAGCCCTTTGAtCCTG.............................................................      10951_1_0_0_0_0_2       MATURE            3         3.70            1         2.70            2         4.55                      19T4   
...............TCCCTGAGGAGCCCTTTGtGCCTt.............................................................      15843_1_0_0_0_0_1       MATURE            2         2.47            1         2.70            1         2.27                      18T4   
...............TCCCTGAGGAGCCCTTTGAcCCTGa............................................................      42308_1_0_0_0_0_1       MATURE            2         2.47            1         2.70            1         2.27                      19C4   
...............TCCCTGAGGAGCCCTTTGAGCCTGa............................................................      34614_0_0_0_0_0_2       MATURE            2         2.47            0         0.00            2         4.55                        24   
...............TCCCTGAGGAGCCCTTTGAaCCa..............................................................      20310_0_0_0_0_0_2       MATURE            2         2.47            0         0.00            2         4.55                      19A2   
...............TCCCTGAGGAGCCCTTTGAGaCTGt............................................................      42119_2_0_0_0_0_0       MATURE            2         2.47            2         5.41            0         0.00                      20A3   
...............TCCCTGAGGAGCCCTTTGAtCCTt.............................................................      11212_0_0_0_0_0_1       MATURE            1         1.23            0         0.00            1         2.27                      19T3   
................CCCTGAGGAGCCCTTTGAGCCTGGt...........................................................      29436_0_0_0_0_0_1       MATURE            1         1.23            0         0.00            1         2.27                        24   
...............TCCCTGAGGAGCCCTTTGAaCCTGa............................................................      26189_1_0_0_0_0_0       MATURE            1         1.23            1         2.70            0         0.00                      19A4   
...............TCCCTGAGGAGCCCTTcGAGCa...............................................................       8135_0_0_0_0_0_1       MATURE            1         1.23            0         0.00            1         2.27                      16C4   
...............TCCCTGAGGAGCCCTTTaAGCCc..............................................................       1630_1_0_0_0_0_0       MATURE            1         1.23            1         2.70            0         0.00                      17A4   
...............TCCCTGAGGAGCCCTTTGAcCCa..............................................................      16675_1_0_0_0_0_0       MATURE            1         1.23            1         2.70            0         0.00                      19C2   
...............TCCCTGAGGAGCCCTTTGAcCCTGt............................................................       2926_1_0_0_0_0_0       MATURE            1         1.23            1         2.70            0         0.00                      19C4   
...............TCCCTGAGGAGCCCTTTGAGCCTt.............................................................      38461_1_0_0_0_0_0       MATURE            1         1.23            1         2.70            0         0.00                        23   
...............TCCCTGAGGAGCCCTTTGAGt................................................................      18107_1_0_0_0_0_0       MATURE            1         1.23            1         2.70            0         0.00                        20   
...............TCCCTGAGGAGCCCTTTGAGCa...............................................................       1818_1_0_0_0_0_0       MATURE            1         1.23            1         2.70            0         0.00                        21   
...............TCCCTGAGGAGCCCTTTGAGCCTc.............................................................      27846_1_0_0_0_0_0       MATURE            1         1.23            1         2.70            0         0.00                        23   
...............TCCCTGAGGAGCCCTTTGAGCaTGt............................................................       5669_0_0_0_0_0_1       MATURE            1         1.23            0         0.00            1         2.27                      21A2   
...............TCCCTGAGGAGCCCTTTGAcCCTt.............................................................      16443_1_0_0_0_0_0       MATURE            1         1.23            1         2.70            0         0.00                      19C3   
...............TCCCTGAGGAGCCCTTTGAGCCT..............................................................      31066_0_0_0_0_0_1       MATURE            1         1.23            0         0.00            1         2.27                        23   
...............TCCCTGAGGAGCCCTTTGA..................................................................      26442_0_0_0_0_0_1       MATURE            1         1.23            0         0.00            1         2.27                        19   
...............TCCCTGAGGAGCCCTaTGAGC................................................................      42930_0_0_0_0_0_1       MATURE            1         1.23            0         0.00            1         2.27                      15A5   
................CCCTGAGGAGCCCTTTGAGCCTa.............................................................      12190_0_0_0_0_0_1       MATURE            1         1.23            0         0.00            1         2.27                        22   
...............TCCCTGAGGAGCCCTTTGAaCCT..............................................................      32234_1_0_0_0_0_0       MATURE            1         1.23            1         2.70            0         0.00                      19A3   
..............TTCCCTGAGGAGCCCTaTGAG.................................................................      23499_0_0_0_0_0_1       MATURE            1         1.23            0         0.00            1         2.27                      16A4   
...............TCCCTGAGGAGCCCTTTGAaCCTa.............................................................      39626_1_0_0_0_0_0       MATURE            1         1.23            1         2.70            0         0.00                      19A3   
...............TCCCTGAGGAGCCCTTTGAGCCg..............................................................      19623_0_0_0_0_0_1       MATURE            1         1.23            0         0.00            1         2.27                        22   
...............TCCCTGAGGAGCCCTTTaAGCC...............................................................      12364_1_0_0_0_0_0       MATURE            1         1.23            1         2.70            0         0.00                      17A4   
...............TCCCTGAGGAGCCCTTTGAGa................................................................      24373_0_0_0_0_0_1       MATURE            1         1.23            0         0.00            1         2.27                        20   
...............TCCCTGAGGAGCCCTTgGAGC................................................................      16210_0_0_0_0_0_1       MATURE            1         1.23            0         0.00            1         2.27                      16G4   
...............TCCCTGAGGAGCCCTTTGAaCCTGc............................................................      15508_0_0_0_0_0_1       MATURE            1         1.23            0         0.00            1         2.27                      19A4   
...............TCCCTGAGGAGCCCTTTcAGCCc..............................................................       8750_1_0_0_0_0_0       MATURE            1         1.23            1         2.70            0         0.00                      17C4   
...............TCCCTGAGGAGCCCTTTGtGCCTG.............................................................      27840_0_0_0_0_0_1       MATURE            1         1.23            0         0.00            1         2.27                      18T5   
...............TCCCTGAGGAGCCCTTTGAa.................................................................      43882_1_0_0_0_0_0       MATURE            1         1.23            1         2.70            0         0.00                        19   
...............TCCCTGAGGAGCCCTTTGAcCCTG.............................................................      16424_1_0_0_0_0_0       MATURE            1         1.23            1         2.70            0         0.00                      19C4   
...............TCCCTGAGGAGCCCTTTGAGCCTG.............................................................        697_0_0_0_0_0_1       MATURE            1         1.23            0         0.00            1         2.27                        24   
                                                                                                                                           ----------                ----------                ----------   
                                                                                                                                                   81                        37                        44                                          
                                                                                                                                                                        (45.68)                   (54.32)                                       




((( SUMMARY )))

          -CAT-          -REST-           -ACT-         -TOTAL-        -TOTAL%-
     ----------      ----------      ----------      ----------      ----------
         MATURE              37              44              81         100.00%
                     ----------      ----------      ----------                
                             37              44              81                



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