[BEGIN]

REFERENCE HAIRPIN
**************************************************************************************************
ID                 : mmu-mir-34c
DESCRIPTION        : mmu-mir-34c MI0000403 Mus musculus miR-34c stem-loop
CHROMOSOME         : 9
SPAN               : 50911139 - 50911215
LENGTH             : 77
SEQUENCE           : AGTCTAGTTACTAGGCAGTGTAGTTAGCTGATTGCTAATAGTACCAATCACTAACCACACAGCCAGGTAAAAAGACT
OVERHANG THRESHOLD : 40%
**************************************************************************************************


TARGET
******************************
CATEGORY   : MATURE
ID         : mmu-miR-34c
ACCID      : MI0000403
PARENT     : mmu-mir-34c
CHROMOSOME : 9
START      : 50911139
STOP       : 50911215
OFFSET     : 13..35
SEQUENCE   : AGGCAGTGTAGTTAGCTGATTGC
STRAND     : -
******************************


TARGET
******************************
CATEGORY   : MATURESTAR
ID         : mmu-miR-34c*
ACCID      : MI0000403
PARENT     : mmu-mir-34c
CHROMOSOME : 9
START      : 50911139
STOP       : 50911215
OFFSET     : 46..67
SEQUENCE   : AATCACTAACCACACAGCCAGG
STRAND     : -
******************************



*** MATURE ***
_____________________________________________________________________________
AGTCTAGTTACTAGGCAGTGTAGTTAGCTGATTGCTAATAGTACCAATCACTAACCACACAGCCAGGTAAAAAGACT REF                  9                    50911139 - 50911215  
            AGGCAGTGTAGTTAGCTGATTGC                                           MATURE               9                    50911152 - 50911250  mmu-miR-34c          -                    
                                             AATCACTAACCACACAGCCAGG           MATURESTAR           9                    50911185 - 50911282  mmu-miR-34c*         -                    
_____________________________________________________________________________

                                                                         -SEQ-                -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
............AGGCAGTGTAGTTAGCTGATTGC...........................................   35360_13_0_0_0_0_42       MATURE           55        27.23           13        19.70           42        30.88                        23   
............AGGCAGTGTAGTTAGCTGATTGt...........................................    30986_9_0_0_0_0_10       MATURE           19         9.41            9        13.64           10         7.35                        22   
............AGGCAGTGTAGTTAGCTGATTG............................................    40396_4_0_0_0_0_12       MATURE           16         7.92            4         6.06           12         8.82                        22   
............AGGCAGTGTAGTTAGCTGATTGa...........................................     33919_6_0_0_0_0_8       MATURE           14         6.93            6         9.09            8         5.88                        22   
............AGGCAGTGTAGTTAGCTcATTGC...........................................     39785_5_0_0_0_0_4       MATURE            9         4.46            5         7.58            4         2.94                      17C5   
............AGGCAGTGTAGTTAGCTGATaGC...........................................     32590_1_0_0_0_0_6       MATURE            7         3.47            1         1.52            6         4.41                      20A2   
............AGGCAGTGTAGTTAGCTGATT.............................................     35282_5_0_0_0_0_2       MATURE            7         3.47            5         7.58            2         1.47                        21   
............AGGCAGTGTAGTTAGCcGATTG............................................     28052_1_0_0_0_0_4       MATURE            5         2.48            1         1.52            4         2.94                      16C5   
............AGGCAGTGTAGTTAGCTaATTGC...........................................     35055_2_0_0_0_0_2       MATURE            4         1.98            2         3.03            2         1.47                      17A5   
............AGGCAGTGTAGTTAGCaGATTG............................................     39500_0_0_0_0_0_4       MATURE            4         1.98            0         0.00            4         2.94                      16A5   
............AGGCAGTGTAGTTAGCTGATTGCc..........................................     41205_1_0_0_0_0_3       MATURE            4         1.98            1         1.52            3         2.21                        23   
............AGGCAGTGTAGTTAGCTGATTGCa..........................................      1848_1_0_0_0_0_3       MATURE            4         1.98            1         1.52            3         2.21                        23   
............AGGCAGTGTAGTTAGCTGAaTGC...........................................     10595_2_0_0_0_0_1       MATURE            3         1.49            2         3.03            1         0.74                      19A3   
............AGGCAGTGTAGTTAGCTGATTa............................................     20090_1_0_0_0_0_2       MATURE            3         1.49            1         1.52            2         1.47                        21   
............AGGCAGTGTAGTTAGCTGAcTGC...........................................     13708_1_0_0_0_0_2       MATURE            3         1.49            1         1.52            2         1.47                      19C3   
............AGGCAGTGTAGTTAGCTGAaTGa...........................................     42987_1_0_0_0_0_2       MATURE            3         1.49            1         1.52            2         1.47                      19A2   
............AGGCAGTGTAGTTAGCTGATTGCT..........................................     24041_1_0_0_0_0_2       MATURE            3         1.49            1         1.52            2         1.47                        24   
............AGGCAGTGTAGTTAGCTaATTGt...........................................     40250_1_0_0_0_0_2       MATURE            3         1.49            1         1.52            2         1.47                      17A4   
............AGGCAGTGTAGTTAGCTtATTGC...........................................     38385_1_0_0_0_0_2       MATURE            3         1.49            1         1.52            2         1.47                      17T5   
............AGGCAGTGTAGTTAGCTGATgGC...........................................     30366_1_0_0_0_0_1       MATURE            2         0.99            1         1.52            1         0.74                      20G2   
............AGGCAGTGTAGTTAGCTaATT.............................................     20193_0_0_0_0_0_2       MATURE            2         0.99            0         0.00            2         1.47                      17A3   
............AGGCAGTGTAGTTAGCgGATTG............................................     16787_2_0_0_0_0_0       MATURE            2         0.99            2         3.03            0         0.00                      16G5   
............AGGCAGTGTAGTTAGCTGAaTGCa..........................................     32751_0_0_0_0_0_2       MATURE            2         0.99            0         0.00            2         1.47                      19A3   
............AGGCAGTGTAGTTAGCTcATTG............................................     38286_0_0_0_0_0_2       MATURE            2         0.99            0         0.00            2         1.47                      17C4   
............AGGCAGTGTAGTTAGCaGATT.............................................     31549_1_0_0_0_0_1       MATURE            2         0.99            1         1.52            1         0.74                      16A4   
............AGGCAGTGTAGTTAGCTGAcTGCT..........................................     33805_1_0_0_0_0_1       MATURE            2         0.99            1         1.52            1         0.74                      19C4   
............AGGCAGTGTAGTTAGCTGAcTGCa..........................................      6604_1_0_0_0_0_1       MATURE            2         0.99            1         1.52            1         0.74                      19C3   
.............GGCAGTGTAGTTAGCTGATTGC...........................................     16834_1_0_0_0_0_0       MATURE            1         0.50            1         1.52            0         0.00                        22   
............AGGCAGTGTAGTTAGCTGATa.............................................      8001_0_0_0_0_0_1       MATURE            1         0.50            0         0.00            1         0.74                        20   
............AGGCAGTGTAGTTAGCTGgTTGCa..........................................     39168_0_0_0_0_0_1       MATURE            1         0.50            0         0.00            1         0.74                      18G4   
............AGGCAGTGTAGTTAGCTcATT.............................................      1854_0_0_0_0_0_1       MATURE            1         0.50            0         0.00            1         0.74                      17C3   
............AGGCAGTGTAGTTAGCTGtTTGa...........................................      8140_0_0_0_0_0_1       MATURE            1         0.50            0         0.00            1         0.74                      18T3   
............AGGCAGTGTAGTTAGCgGATTa............................................     29184_0_0_0_0_0_1       MATURE            1         0.50            0         0.00            1         0.74                      16G4   
............AGGCAGTGTAGTTAGCTGATaGCc..........................................     25528_0_0_0_0_0_1       MATURE            1         0.50            0         0.00            1         0.74                      20A2   
............AGGCAGTGTAGTTAGCTGgTTGC...........................................     22298_0_0_0_0_0_1       MATURE            1         0.50            0         0.00            1         0.74                      18G4   
............AGGCAGTGTAGTTAGCTGAT..............................................       680_1_0_0_0_0_0       MATURE            1         0.50            1         1.52            0         0.00                        20   
............AGGCAGTGTAGTTAGtTGATT.............................................      7154_0_0_0_0_0_1       MATURE            1         0.50            0         0.00            1         0.74                      15T5   
............AGGCAGTGTAGTTAGCTGATTt............................................     12841_0_0_0_0_0_1       MATURE            1         0.50            0         0.00            1         0.74                        21   
............AGGCAGTGTAGTTAGCTGAaTGCT..........................................     43585_0_0_0_0_0_1       MATURE            1         0.50            0         0.00            1         0.74                      19A4   
............AGGCAGTGTAGTTAGCTGAaTGCc..........................................     29730_0_0_0_0_0_1       MATURE            1         0.50            0         0.00            1         0.74                      19A3   
............AGGCAGTGTAGTTAGCTGATg.............................................     20265_1_0_0_0_0_0       MATURE            1         0.50            1         1.52            0         0.00                        20   
............AGGCAGTGTAGTTAGCTGA...............................................      9031_0_0_0_0_0_1       MATURE            1         0.50            0         0.00            1         0.74                        19   
............AGGCAGTGTAGTTAGCcGATTt............................................      3352_0_0_0_0_0_1       MATURE            1         0.50            0         0.00            1         0.74                      16C4   
............AGGCAGTGTAGTTAGCTtATTG............................................     38612_1_0_0_0_0_0       MATURE            1         0.50            1         1.52            0         0.00                      17T4   
                                                                                                                    ----------                ----------                ----------   
                                                                                                                           202                        66                       136                                          
                                                                                                                                                 (32.67)                   (67.33)                                       




*** MATURESTAR ***
_____________________________________________________________________________
AGTCTAGTTACTAGGCAGTGTAGTTAGCTGATTGCTAATAGTACCAATCACTAACCACACAGCCAGGTAAAAAGACT REF                  9                    50911139 - 50911215  
            AGGCAGTGTAGTTAGCTGATTGC                                           MATURE               9                    50911152 - 50911250  mmu-miR-34c          -                    
                                             AATCACTAACCACACAGCCAGG           MATURESTAR           9                    50911185 - 50911282  mmu-miR-34c*         -                    
_____________________________________________________________________________

                                                                         -SEQ-              -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
.............................................AATCACTAACCACACAaCCAG............   43984_1_0_0_0_0_2   MATURESTAR            3        13.04            1        12.50            2        13.33                      16A4   
.............................................AATCACTAACCACACAaCCAGG...........   37178_0_0_0_0_0_3   MATURESTAR            3        13.04            0         0.00            3        20.00                      16A5   
.............................................AATCACTAACCACACAGCCcGGa..........   41557_2_0_0_0_0_0   MATURESTAR            2         8.70            2        25.00            0         0.00                      19C2   
.............................................AATCACTAACCACACAcCCAGt...........   16094_1_0_0_0_0_1   MATURESTAR            2         8.70            1        12.50            1         6.67                      16C4   
.............................................AATCACTAACCACACAGCCAGa...........   16079_1_0_0_0_0_1   MATURESTAR            2         8.70            1        12.50            1         6.67                        21   
.............................................AATCACTAACCACACAGCCAG............   19710_0_0_0_0_0_1   MATURESTAR            1         4.35            0         0.00            1         6.67                        21   
.............................................AATCACTAACCACACAGCtAG............   15986_0_0_0_0_0_1   MATURESTAR            1         4.35            0         0.00            1         6.67                      18T2   
.............................................AATCACTAACCACACAGCCAGt...........    5373_0_0_0_0_0_1   MATURESTAR            1         4.35            0         0.00            1         6.67                        21   
.............................................AATCACTAACCACACAGaCAGa...........   32181_1_0_0_0_0_0   MATURESTAR            1         4.35            1        12.50            0         0.00                      17A3   
.............................................AATCACTAACCACACAGCCtGGTA.........   33094_1_0_0_0_0_0   MATURESTAR            1         4.35            1        12.50            0         0.00                      19T4   
.............................................AATCACTAACCACACAGCCAGGTAA........   18258_0_0_0_0_0_1   MATURESTAR            1         4.35            0         0.00            1         6.67                        25   
.............................................AATCACTAACCACACAGCCAGaTAt........    1113_0_0_0_0_0_1   MATURESTAR            1         4.35            0         0.00            1         6.67                      21A2   
.............................................AATCACTAACCACACAGCCAGG...........   13712_0_0_0_0_0_1   MATURESTAR            1         4.35            0         0.00            1         6.67                        22   
.............................................AATCACTAACCACACAcCCAG............   22913_0_0_0_0_0_1   MATURESTAR            1         4.35            0         0.00            1         6.67                      16C4   
.............................................AATCACTAACCACACAGCCAt............    9389_1_0_0_0_0_0   MATURESTAR            1         4.35            1        12.50            0         0.00                        20   
.............................................AATCACTAACCACACAGCCg.............    5802_0_0_0_0_0_1   MATURESTAR            1         4.35            0         0.00            1         6.67                        19   
                                                                                                                  ----------                ----------                ----------   
                                                                                                                          23                         8                        15                                          
                                                                                                                                               (34.78)                   (65.22)                                       




((( SUMMARY )))

          -CAT-          -REST-           -ACT-         -TOTAL-        -TOTAL%-
     ----------      ----------      ----------      ----------      ----------
         MATURE              66             136             202          89.78%
     MATURESTAR               8              15              23          10.22%
                     ----------      ----------      ----------                
                             74             151             225                



[END]
