[BEGIN]
REFERENCE HAIRPIN
**************************************************************************************************
ID : mmu-mir-34c
DESCRIPTION : mmu-mir-34c MI0000403 Mus musculus miR-34c stem-loop
CHROMOSOME : 9
SPAN : 50911139 - 50911215
LENGTH : 77
SEQUENCE : AGTCTAGTTACTAGGCAGTGTAGTTAGCTGATTGCTAATAGTACCAATCACTAACCACACAGCCAGGTAAAAAGACT
OVERHANG THRESHOLD : 40%
**************************************************************************************************
TARGET
******************************
CATEGORY : MATURE
ID : mmu-miR-34c
ACCID : MI0000403
PARENT : mmu-mir-34c
CHROMOSOME : 9
START : 50911139
STOP : 50911215
OFFSET : 13..35
SEQUENCE : AGGCAGTGTAGTTAGCTGATTGC
STRAND : -
******************************
TARGET
******************************
CATEGORY : MATURESTAR
ID : mmu-miR-34c*
ACCID : MI0000403
PARENT : mmu-mir-34c
CHROMOSOME : 9
START : 50911139
STOP : 50911215
OFFSET : 46..67
SEQUENCE : AATCACTAACCACACAGCCAGG
STRAND : -
******************************
*** MATURE ***
_____________________________________________________________________________
AGTCTAGTTACTAGGCAGTGTAGTTAGCTGATTGCTAATAGTACCAATCACTAACCACACAGCCAGGTAAAAAGACT REF 9 50911139 - 50911215
AGGCAGTGTAGTTAGCTGATTGC MATURE 9 50911152 - 50911250 mmu-miR-34c -
AATCACTAACCACACAGCCAGG MATURESTAR 9 50911185 - 50911282 mmu-miR-34c* -
_____________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
............AGGCAGTGTAGTTAGCTGATTGC........................................... 35360_13_0_0_0_0_42 MATURE 55 27.23 13 19.70 42 30.88 23
............AGGCAGTGTAGTTAGCTGATTGt........................................... 30986_9_0_0_0_0_10 MATURE 19 9.41 9 13.64 10 7.35 22
............AGGCAGTGTAGTTAGCTGATTG............................................ 40396_4_0_0_0_0_12 MATURE 16 7.92 4 6.06 12 8.82 22
............AGGCAGTGTAGTTAGCTGATTGa........................................... 33919_6_0_0_0_0_8 MATURE 14 6.93 6 9.09 8 5.88 22
............AGGCAGTGTAGTTAGCTcATTGC........................................... 39785_5_0_0_0_0_4 MATURE 9 4.46 5 7.58 4 2.94 17C5
............AGGCAGTGTAGTTAGCTGATaGC........................................... 32590_1_0_0_0_0_6 MATURE 7 3.47 1 1.52 6 4.41 20A2
............AGGCAGTGTAGTTAGCTGATT............................................. 35282_5_0_0_0_0_2 MATURE 7 3.47 5 7.58 2 1.47 21
............AGGCAGTGTAGTTAGCcGATTG............................................ 28052_1_0_0_0_0_4 MATURE 5 2.48 1 1.52 4 2.94 16C5
............AGGCAGTGTAGTTAGCTaATTGC........................................... 35055_2_0_0_0_0_2 MATURE 4 1.98 2 3.03 2 1.47 17A5
............AGGCAGTGTAGTTAGCaGATTG............................................ 39500_0_0_0_0_0_4 MATURE 4 1.98 0 0.00 4 2.94 16A5
............AGGCAGTGTAGTTAGCTGATTGCc.......................................... 41205_1_0_0_0_0_3 MATURE 4 1.98 1 1.52 3 2.21 23
............AGGCAGTGTAGTTAGCTGATTGCa.......................................... 1848_1_0_0_0_0_3 MATURE 4 1.98 1 1.52 3 2.21 23
............AGGCAGTGTAGTTAGCTGAaTGC........................................... 10595_2_0_0_0_0_1 MATURE 3 1.49 2 3.03 1 0.74 19A3
............AGGCAGTGTAGTTAGCTGATTa............................................ 20090_1_0_0_0_0_2 MATURE 3 1.49 1 1.52 2 1.47 21
............AGGCAGTGTAGTTAGCTGAcTGC........................................... 13708_1_0_0_0_0_2 MATURE 3 1.49 1 1.52 2 1.47 19C3
............AGGCAGTGTAGTTAGCTGAaTGa........................................... 42987_1_0_0_0_0_2 MATURE 3 1.49 1 1.52 2 1.47 19A2
............AGGCAGTGTAGTTAGCTGATTGCT.......................................... 24041_1_0_0_0_0_2 MATURE 3 1.49 1 1.52 2 1.47 24
............AGGCAGTGTAGTTAGCTaATTGt........................................... 40250_1_0_0_0_0_2 MATURE 3 1.49 1 1.52 2 1.47 17A4
............AGGCAGTGTAGTTAGCTtATTGC........................................... 38385_1_0_0_0_0_2 MATURE 3 1.49 1 1.52 2 1.47 17T5
............AGGCAGTGTAGTTAGCTGATgGC........................................... 30366_1_0_0_0_0_1 MATURE 2 0.99 1 1.52 1 0.74 20G2
............AGGCAGTGTAGTTAGCTaATT............................................. 20193_0_0_0_0_0_2 MATURE 2 0.99 0 0.00 2 1.47 17A3
............AGGCAGTGTAGTTAGCgGATTG............................................ 16787_2_0_0_0_0_0 MATURE 2 0.99 2 3.03 0 0.00 16G5
............AGGCAGTGTAGTTAGCTGAaTGCa.......................................... 32751_0_0_0_0_0_2 MATURE 2 0.99 0 0.00 2 1.47 19A3
............AGGCAGTGTAGTTAGCTcATTG............................................ 38286_0_0_0_0_0_2 MATURE 2 0.99 0 0.00 2 1.47 17C4
............AGGCAGTGTAGTTAGCaGATT............................................. 31549_1_0_0_0_0_1 MATURE 2 0.99 1 1.52 1 0.74 16A4
............AGGCAGTGTAGTTAGCTGAcTGCT.......................................... 33805_1_0_0_0_0_1 MATURE 2 0.99 1 1.52 1 0.74 19C4
............AGGCAGTGTAGTTAGCTGAcTGCa.......................................... 6604_1_0_0_0_0_1 MATURE 2 0.99 1 1.52 1 0.74 19C3
.............GGCAGTGTAGTTAGCTGATTGC........................................... 16834_1_0_0_0_0_0 MATURE 1 0.50 1 1.52 0 0.00 22
............AGGCAGTGTAGTTAGCTGATa............................................. 8001_0_0_0_0_0_1 MATURE 1 0.50 0 0.00 1 0.74 20
............AGGCAGTGTAGTTAGCTGgTTGCa.......................................... 39168_0_0_0_0_0_1 MATURE 1 0.50 0 0.00 1 0.74 18G4
............AGGCAGTGTAGTTAGCTcATT............................................. 1854_0_0_0_0_0_1 MATURE 1 0.50 0 0.00 1 0.74 17C3
............AGGCAGTGTAGTTAGCTGtTTGa........................................... 8140_0_0_0_0_0_1 MATURE 1 0.50 0 0.00 1 0.74 18T3
............AGGCAGTGTAGTTAGCgGATTa............................................ 29184_0_0_0_0_0_1 MATURE 1 0.50 0 0.00 1 0.74 16G4
............AGGCAGTGTAGTTAGCTGATaGCc.......................................... 25528_0_0_0_0_0_1 MATURE 1 0.50 0 0.00 1 0.74 20A2
............AGGCAGTGTAGTTAGCTGgTTGC........................................... 22298_0_0_0_0_0_1 MATURE 1 0.50 0 0.00 1 0.74 18G4
............AGGCAGTGTAGTTAGCTGAT.............................................. 680_1_0_0_0_0_0 MATURE 1 0.50 1 1.52 0 0.00 20
............AGGCAGTGTAGTTAGtTGATT............................................. 7154_0_0_0_0_0_1 MATURE 1 0.50 0 0.00 1 0.74 15T5
............AGGCAGTGTAGTTAGCTGATTt............................................ 12841_0_0_0_0_0_1 MATURE 1 0.50 0 0.00 1 0.74 21
............AGGCAGTGTAGTTAGCTGAaTGCT.......................................... 43585_0_0_0_0_0_1 MATURE 1 0.50 0 0.00 1 0.74 19A4
............AGGCAGTGTAGTTAGCTGAaTGCc.......................................... 29730_0_0_0_0_0_1 MATURE 1 0.50 0 0.00 1 0.74 19A3
............AGGCAGTGTAGTTAGCTGATg............................................. 20265_1_0_0_0_0_0 MATURE 1 0.50 1 1.52 0 0.00 20
............AGGCAGTGTAGTTAGCTGA............................................... 9031_0_0_0_0_0_1 MATURE 1 0.50 0 0.00 1 0.74 19
............AGGCAGTGTAGTTAGCcGATTt............................................ 3352_0_0_0_0_0_1 MATURE 1 0.50 0 0.00 1 0.74 16C4
............AGGCAGTGTAGTTAGCTtATTG............................................ 38612_1_0_0_0_0_0 MATURE 1 0.50 1 1.52 0 0.00 17T4
---------- ---------- ----------
202 66 136
(32.67) (67.33)
*** MATURESTAR ***
_____________________________________________________________________________
AGTCTAGTTACTAGGCAGTGTAGTTAGCTGATTGCTAATAGTACCAATCACTAACCACACAGCCAGGTAAAAAGACT REF 9 50911139 - 50911215
AGGCAGTGTAGTTAGCTGATTGC MATURE 9 50911152 - 50911250 mmu-miR-34c -
AATCACTAACCACACAGCCAGG MATURESTAR 9 50911185 - 50911282 mmu-miR-34c* -
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-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
.............................................AATCACTAACCACACAaCCAG............ 43984_1_0_0_0_0_2 MATURESTAR 3 13.04 1 12.50 2 13.33 16A4
.............................................AATCACTAACCACACAaCCAGG........... 37178_0_0_0_0_0_3 MATURESTAR 3 13.04 0 0.00 3 20.00 16A5
.............................................AATCACTAACCACACAGCCcGGa.......... 41557_2_0_0_0_0_0 MATURESTAR 2 8.70 2 25.00 0 0.00 19C2
.............................................AATCACTAACCACACAcCCAGt........... 16094_1_0_0_0_0_1 MATURESTAR 2 8.70 1 12.50 1 6.67 16C4
.............................................AATCACTAACCACACAGCCAGa........... 16079_1_0_0_0_0_1 MATURESTAR 2 8.70 1 12.50 1 6.67 21
.............................................AATCACTAACCACACAGCCAG............ 19710_0_0_0_0_0_1 MATURESTAR 1 4.35 0 0.00 1 6.67 21
.............................................AATCACTAACCACACAGCtAG............ 15986_0_0_0_0_0_1 MATURESTAR 1 4.35 0 0.00 1 6.67 18T2
.............................................AATCACTAACCACACAGCCAGt........... 5373_0_0_0_0_0_1 MATURESTAR 1 4.35 0 0.00 1 6.67 21
.............................................AATCACTAACCACACAGaCAGa........... 32181_1_0_0_0_0_0 MATURESTAR 1 4.35 1 12.50 0 0.00 17A3
.............................................AATCACTAACCACACAGCCtGGTA......... 33094_1_0_0_0_0_0 MATURESTAR 1 4.35 1 12.50 0 0.00 19T4
.............................................AATCACTAACCACACAGCCAGGTAA........ 18258_0_0_0_0_0_1 MATURESTAR 1 4.35 0 0.00 1 6.67 25
.............................................AATCACTAACCACACAGCCAGaTAt........ 1113_0_0_0_0_0_1 MATURESTAR 1 4.35 0 0.00 1 6.67 21A2
.............................................AATCACTAACCACACAGCCAGG........... 13712_0_0_0_0_0_1 MATURESTAR 1 4.35 0 0.00 1 6.67 22
.............................................AATCACTAACCACACAcCCAG............ 22913_0_0_0_0_0_1 MATURESTAR 1 4.35 0 0.00 1 6.67 16C4
.............................................AATCACTAACCACACAGCCAt............ 9389_1_0_0_0_0_0 MATURESTAR 1 4.35 1 12.50 0 0.00 20
.............................................AATCACTAACCACACAGCCg............. 5802_0_0_0_0_0_1 MATURESTAR 1 4.35 0 0.00 1 6.67 19
---------- ---------- ----------
23 8 15
(34.78) (65.22)
((( SUMMARY )))
-CAT- -REST- -ACT- -TOTAL- -TOTAL%-
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MATURE 66 136 202 89.78%
MATURESTAR 8 15 23 10.22%
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74 151 225
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