[BEGIN]

REFERENCE HAIRPIN
*********************************************************************************************************
ID                 : mmu-mir-34b
DESCRIPTION        : mmu-mir-34b MI0000404 Mus musculus miR-34b stem-loop
CHROMOSOME         : 9
SPAN               : 50911667 - 50911750
LENGTH             : 84
SEQUENCE           : GTGCTCGGTTTGTAGGCAGTGTAATTAGCTGATTGTAGTGCGGTGCTGACAATCACTAACTCCACTGCCATCAAAACAAGGCAC
OVERHANG THRESHOLD : 40%
*********************************************************************************************************


TARGET
******************************
CATEGORY   : MATURE-3P
ID         : mmu-miR-34b-3p
ACCID      : MI0000404
PARENT     : mmu-mir-34b
CHROMOSOME : 9
START      : 50911667
STOP       : 50911750
OFFSET     : 51..72
SEQUENCE   : AATCACTAACTCCACTGCCATC
STRAND     : -
******************************


TARGET
******************************
CATEGORY   : MATURE-5P
ID         : mmu-miR-34b-5p
ACCID      : MI0000404
PARENT     : mmu-mir-34b
CHROMOSOME : 9
START      : 50911667
STOP       : 50911750
OFFSET     : 14..36
SEQUENCE   : AGGCAGTGTAATTAGCTGATTGT
STRAND     : -
******************************



*** MATURE-3P ***
____________________________________________________________________________________
GTGCTCGGTTTGTAGGCAGTGTAATTAGCTGATTGTAGTGCGGTGCTGACAATCACTAACTCCACTGCCATCAAAACAAGGCAC REF                  9                    50911667 - 50911750  
                                                  AATCACTAACTCCACTGCCATC             MATURE-3P            9                    50911718 - 50911822  mmu-miR-34b-3p       -                    
             AGGCAGTGTAATTAGCTGATTGT                                                 MATURE-5P            9                    50911681 - 50911786  mmu-miR-34b-5p       -                    
____________________________________________________________________________________

                                                                                -SEQ-                 -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
...................................................ATCACTAACTCCACTGCCATCA............       7332_2_0_0_0_0_6    MATURE-3P            8        17.78            2        11.11            6        22.22                        22   
..................................................AATCACTAACTCCACTGCCAcCAA...........      11904_2_0_0_0_0_0    MATURE-3P            2         4.44            2        11.11            0         0.00                      20C3   
..................................................AATCACTAACTCCACTGCCATCAt...........      17028_2_0_0_0_0_0    MATURE-3P            2         4.44            2        11.11            0         0.00                        23   
..................................................AATCACTAACTCCACTGCtATCA............      35230_0_0_0_0_0_2    MATURE-3P            2         4.44            0         0.00            2         7.41                      18T4   
..................................................AATCACTAACTCCACTGCCATCA............      13611_1_0_0_0_0_1    MATURE-3P            2         4.44            1         5.56            1         3.70                        23   
...................................................ATCACTAACTCCACTGCtATCt............      37568_0_0_0_0_0_2    MATURE-3P            2         4.44            0         0.00            2         7.41                      17T3   
..................................................AATCACTAACTCCACTGCCATCAc...........      42143_1_0_0_0_0_0    MATURE-3P            1         2.22            1         5.56            0         0.00                        23   
..................................................AATCACTAACTCCACTGCCtTCAt...........       6820_1_0_0_0_0_0    MATURE-3P            1         2.22            1         5.56            0         0.00                      19T3   
...................................................ATCACTAACTCCACTGtCATCA............       7836_0_0_0_0_0_1    MATURE-3P            1         2.22            0         0.00            1         3.70                      16T5   
..................................................AATCACTAACTCCACTGCtATCt............      32078_0_0_0_0_0_1    MATURE-3P            1         2.22            0         0.00            1         3.70                      18T3   
...................................................ATCACTAACTCCACTGCgATCA............      35620_0_0_0_0_0_1    MATURE-3P            1         2.22            0         0.00            1         3.70                      17G4   
..................................................AATCACTAACTCCACTGCCtTCAc...........       9365_0_0_0_0_0_1    MATURE-3P            1         2.22            0         0.00            1         3.70                      19T3   
...................................................ATCACTAACTCCACTGCCATCAt...........      25359_0_0_0_0_0_1    MATURE-3P            1         2.22            0         0.00            1         3.70                        22   
..................................................AATCACTAACTCCACTaCCATC.............      35612_0_0_0_0_0_1    MATURE-3P            1         2.22            0         0.00            1         3.70                      16A5   
...................................................ATCACTAACTCCACTGCCAaCA............      11980_1_0_0_0_0_0    MATURE-3P            1         2.22            1         5.56            0         0.00                      19A2   
..................................................AATCACTAACTCCACTGCCATC.............        278_0_0_0_0_0_1    MATURE-3P            1         2.22            0         0.00            1         3.70                        22   
..................................................AATCACTAACTCCACTGCCATa.............      19941_1_0_0_0_0_0    MATURE-3P            1         2.22            1         5.56            0         0.00                        21   
..................................................AATCACTAACTCCACTGaCATCt............      15585_1_0_0_0_0_0    MATURE-3P            1         2.22            1         5.56            0         0.00                      17A4   
...................................................ATCACTAACTCCACTGCCATCAAt..........      37262_0_0_0_0_0_1    MATURE-3P            1         2.22            0         0.00            1         3.70                        23   
..................................................AATCACTAACTCCACTGCtATC.............      28439_0_0_0_0_0_1    MATURE-3P            1         2.22            0         0.00            1         3.70                      18T3   
..................................................AATCACTAACTCCACTcCCAT..............      28910_0_0_0_0_0_1    MATURE-3P            1         2.22            0         0.00            1         3.70                      16C4   
...................................................ATCACTAACTCCACTaCCATC.............        980_1_0_0_0_0_0    MATURE-3P            1         2.22            1         5.56            0         0.00                      15A5   
..................................................AATCACTAACTCCACTGCCgTC.............      30159_0_0_0_0_0_1    MATURE-3P            1         2.22            0         0.00            1         3.70                      19G2   
...................................................ATCACTAACTCCACTGCCATCAA...........      22670_0_0_0_0_0_1    MATURE-3P            1         2.22            0         0.00            1         3.70                        23   
..................................................AATCACTAACTCCACTGCCATCt............      36215_1_0_0_0_0_0    MATURE-3P            1         2.22            1         5.56            0         0.00                        22   
...................................................ATCACTAACTCCACTGCCA...............       4871_1_0_0_0_0_0    MATURE-3P            1         2.22            1         5.56            0         0.00                        19   
..................................................AATCACTAACTCCACTGCCtTC.............       8746_0_0_0_0_0_1    MATURE-3P            1         2.22            0         0.00            1         3.70                      19T2   
..................................................AATCACTAACTCCACTGCgATC.............      32614_0_0_0_0_0_1    MATURE-3P            1         2.22            0         0.00            1         3.70                      18G3   
..................................................AATCACTAACTCCACTGCtATCAt...........       7828_0_0_0_0_0_1    MATURE-3P            1         2.22            0         0.00            1         3.70                      18T4   
..................................................AATCACTAACTCCACTGCgATCt............      39225_0_0_0_0_0_1    MATURE-3P            1         2.22            0         0.00            1         3.70                      18G3   
..................................................AATCACTAACTCCACTGCaATCt............      27082_1_0_0_0_0_0    MATURE-3P            1         2.22            1         5.56            0         0.00                      18A3   
..................................................AATCACTAACTCCACTGaCATC.............        572_1_0_0_0_0_0    MATURE-3P            1         2.22            1         5.56            0         0.00                      17A4   
..................................................AATCACTAACTCCACTGCtATCc............      31449_1_0_0_0_0_0    MATURE-3P            1         2.22            1         5.56            0         0.00                      18T3   
                                                                                                                            ----------                ----------                ----------   
                                                                                                                                    45                        18                        27                                          
                                                                                                                                                         (40.00)                   (60.00)                                       




*** MATURE-5P ***
____________________________________________________________________________________
GTGCTCGGTTTGTAGGCAGTGTAATTAGCTGATTGTAGTGCGGTGCTGACAATCACTAACTCCACTGCCATCAAAACAAGGCAC REF                  9                    50911667 - 50911750  
                                                  AATCACTAACTCCACTGCCATC             MATURE-3P            9                    50911718 - 50911822  mmu-miR-34b-3p       -                    
             AGGCAGTGTAATTAGCTGATTGT                                                 MATURE-5P            9                    50911681 - 50911786  mmu-miR-34b-5p       -                    
____________________________________________________________________________________

                                                                                -SEQ-                -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
.............AGGCAGTGTAATTAGCTGATTGT.................................................   43829_50_0_0_0_0_85    MATURE-5P          135        60.54           50        56.18           85        63.43                        23   
.............AGGCAGTGTAATTAGCTcATTGT.................................................     35719_7_0_0_0_0_6    MATURE-5P           13         5.83            7         7.87            6         4.48                      17C5   
.............AGGCAGTGTAATTAGCTGATaGT.................................................     20928_5_0_0_0_0_5    MATURE-5P           10         4.48            5         5.62            5         3.73                      20A2   
.............AGGCAGTGTAATTAGCTGATTG..................................................     42406_2_0_0_0_0_8    MATURE-5P           10         4.48            2         2.25            8         5.97                        22   
.............AGGCAGTGTAATTAGCTGATTGa.................................................     22477_5_0_0_0_0_3    MATURE-5P            8         3.59            5         5.62            3         2.24                        22   
.............AGGCAGTGTAATTAGCTGATTGTA................................................     29718_3_0_0_0_0_4    MATURE-5P            7         3.14            3         3.37            4         2.99                        24   
.............AGGCAGTGTAATTAGCTGAaTGT.................................................     25322_2_0_0_0_0_4    MATURE-5P            6         2.69            2         2.25            4         2.99                      19A3   
.............AGGCAGTGTAATTAGCTGATcGT.................................................     39944_2_0_0_0_0_3    MATURE-5P            5         2.24            2         2.25            3         2.24                      20C2   
.............AGGCAGTGTAATTAGCTGATTGc.................................................     26982_0_0_0_0_0_4    MATURE-5P            4         1.79            0         0.00            4         2.99                        22   
.............AGGCAGTGTAATTAGCTGATTGTt................................................     23036_3_0_0_0_0_0    MATURE-5P            3         1.35            3         3.37            0         0.00                        23   
.............AGGCAGTGTAATTAGCTGAcTGT.................................................     42607_2_0_0_0_0_1    MATURE-5P            3         1.35            2         2.25            1         0.75                      19C3   
.............AGGCAGTGTAATTAGCTGATgGT.................................................      4090_1_0_0_0_0_1    MATURE-5P            2         0.90            1         1.12            1         0.75                      20G2   
.............AGGCAGTGTAATTAGCTGATTGTAt...............................................      7426_0_0_0_0_0_2    MATURE-5P            2         0.90            0         0.00            2         1.49                        24   
........TTaGTAGGCAGTGTAATTAGCTGAT....................................................     23679_1_0_0_0_0_1    MATURE-5P            2         0.90            1         1.12            1         0.75                      2A22   
.............AGGCAGTGTAATTAGCTGcTTGT.................................................      3126_0_0_0_0_0_2    MATURE-5P            2         0.90            0         0.00            2         1.49                      18C4   
...............GCAGTGTAATTAGCTGATTGT.................................................     16193_1_0_0_0_0_0    MATURE-5P            1         0.45            1         1.12            0         0.00                        21   
.............AGGCAGTcTAATTAGCTGATTGT.................................................     16498_0_0_0_0_0_1    MATURE-5P            1         0.45            0         0.00            1         0.75                      7C15   
.............AGGCAGTGTAATTAGCTGtTTGT.................................................     11999_1_0_0_0_0_0    MATURE-5P            1         0.45            1         1.12            0         0.00                      18T4   
...........GTAGGCAGTGTAATTAGCTGATT...................................................     42303_1_0_0_0_0_0    MATURE-5P            1         0.45            1         1.12            0         0.00                        23   
.............AGGCAGTGTAATTAGCgGATTG..................................................     17427_0_0_0_0_0_1    MATURE-5P            1         0.45            0         0.00            1         0.75                      16G5   
...........GTAGGCAGTGTAATTAGCTcATTGT.................................................      3170_0_0_0_0_0_1    MATURE-5P            1         0.45            0         0.00            1         0.75                      19C5   
.............AGGCAGTGTAATTAGCTcATTGa.................................................     24774_0_0_0_0_0_1    MATURE-5P            1         0.45            0         0.00            1         0.75                      17C4   
.............AGGCAGTGTAATTAGCTGATT...................................................      6275_1_0_0_0_0_0    MATURE-5P            1         0.45            1         1.12            0         0.00                        21   
..............GGCAGTGTAATTAGCTGATTGT.................................................     33528_1_0_0_0_0_0    MATURE-5P            1         0.45            1         1.12            0         0.00                        22   
.............AGGCAGTGTAATTAGCTGcTTGTA................................................      2995_1_0_0_0_0_0    MATURE-5P            1         0.45            1         1.12            0         0.00                      18C5   
...........GTAGGCAGTGTAATTAGCTGATTGT.................................................      2876_0_0_0_0_0_1    MATURE-5P            1         0.45            0         0.00            1         0.75                        25   
                                                                                                                           ----------                ----------                ----------   
                                                                                                                                  223                        89                       134                                          
                                                                                                                                                        (39.91)                   (60.09)                                       




((( SUMMARY )))

          -CAT-          -REST-           -ACT-         -TOTAL-        -TOTAL%-
     ----------      ----------      ----------      ----------      ----------
      MATURE-3P              18              27              45          16.79%
      MATURE-5P              89             134             223          83.21%
                     ----------      ----------      ----------                
                            107             161             268                



[END]
