[BEGIN]

REFERENCE HAIRPIN
***************************************************************************************************************************
ID                 : mmu-mir-34a
DESCRIPTION        : mmu-mir-34a MI0000584 Mus musculus miR-34a stem-loop
CHROMOSOME         : 4
SPAN               : 149442563 - 149442664
LENGTH             : 102
SEQUENCE           : CCAGCTGTGAGTAATTCTTTGGCAGTGTCTTAGCTGGTTGTTGTGAGTATTAGCTAAGGAAGCAATCAGCAAGTATACTGCCCTAGAAGTGCTGCACATTGT
OVERHANG THRESHOLD : 40%
***************************************************************************************************************************


TARGET
******************************
CATEGORY   : MATURE
ID         : mmu-miR-34a
ACCID      : MI0000584
PARENT     : mmu-mir-34a
CHROMOSOME : 4
START      : 149442563
STOP       : 149442664
OFFSET     : 20..41
SEQUENCE   : TGGCAGTGTCTTAGCTGGTTGT
STRAND     : +
******************************



*** MATURE ***
______________________________________________________________________________________________________
CCAGCTGTGAGTAATTCTTTGGCAGTGTCTTAGCTGGTTGTTGTGAGTATTAGCTAAGGAAGCAATCAGCAAGTATACTGCCCTAGAAGTGCTGCACATTGT REF                  4                    149442563 - 149442664 
                   TGGCAGTGTCTTAGCTGGTTGT                                                              MATURE               4                    149442583 - 149442705 mmu-miR-34a          +                    
______________________________________________________________________________________________________

                                                                                                  -SEQ-               -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
...................TGGCAGTGTCTTAGCTGGTTGT..............................................................   27661_6_0_0_0_0_25       MATURE           31        28.97            6        20.69           25        32.05                        22   
...................TGGCAGTGTCTTAGCTGaTTGT..............................................................   26228_3_0_0_0_0_10       MATURE           13        12.15            3        10.34           10        12.82                      17A4   
...................TGGCAGTGTCTTAGCTaGTTGT..............................................................    25805_3_0_0_0_0_6       MATURE            9         8.41            3        10.34            6         7.69                      16A5   
...................TGGCAGTGTCTTAGCTGGTTGTTt............................................................    40141_5_0_0_0_0_3       MATURE            8         7.48            5        17.24            3         3.85                        23   
...................TGGCAGTGTCTTAGCTGGTaGT..............................................................    35888_1_0_0_0_0_5       MATURE            6         5.61            1         3.45            5         6.41                      19A2   
...................TGGCAGTGTCTTAGCTGGTTGTT.............................................................    39090_2_0_0_0_0_4       MATURE            6         5.61            2         6.90            4         5.13                        23   
...................TGGCAGTGTCTTAGCTcGTTGT..............................................................    14518_1_0_0_0_0_5       MATURE            6         5.61            1         3.45            5         6.41                      16C5   
...................TGGCAGTGTCTTAGCTGGaTGT..............................................................     9360_0_0_0_0_0_3       MATURE            3         2.80            0         0.00            3         3.85                      18A3   
...................TGGCAGTGTCTTAGCTGaTTGTT.............................................................    40311_0_0_0_0_0_3       MATURE            3         2.80            0         0.00            3         3.85                      17A5   
...................TGGCAGTGTCTTAGCTGtTTGT..............................................................    41597_1_0_0_0_0_2       MATURE            3         2.80            1         3.45            2         2.56                      17T4   
...................TGGCAGTGTCTTAGCTGGTgGTTt............................................................    22733_2_0_0_0_0_0       MATURE            2         1.87            2         6.90            0         0.00                      19G3   
...................TGGCAGTGTCTTAGCTGGTTG...............................................................    38586_0_0_0_0_0_2       MATURE            2         1.87            0         0.00            2         2.56                        21   
...................TGGCAGTGTCTTAGCTGaTTGTc.............................................................    36742_2_0_0_0_0_0       MATURE            2         1.87            2         6.90            0         0.00                      17A4   
...................TGGCAGTGTCTTAGCTGGTTaTT.............................................................    32988_0_0_0_0_0_2       MATURE            2         1.87            0         0.00            2         2.56                      20A2   
...................TGGCAGTGTCTTAGCTGGTT................................................................     5235_0_0_0_0_0_2       MATURE            2         1.87            0         0.00            2         2.56                        20   
...................TGGCAGTGTCTTAGCTGaTTGTa.............................................................      546_0_0_0_0_0_1       MATURE            1         0.93            0         0.00            1         1.28                      17A4   
...................TGGCAGTGTCTTAGCTGGTTGTa.............................................................    41829_0_0_0_0_0_1       MATURE            1         0.93            0         0.00            1         1.28                        22   
...................TGGCAGTGTCTTAGCTaGTTG...............................................................    22284_1_0_0_0_0_0       MATURE            1         0.93            1         3.45            0         0.00                      16A4   
...................TGGCAGTGTCTTAGCTGGTTGTg.............................................................     3560_0_0_0_0_0_1       MATURE            1         0.93            0         0.00            1         1.28                        22   
...................TGGCAGTGTCTTAGCTGtTTGTT.............................................................     9727_1_0_0_0_0_0       MATURE            1         0.93            1         3.45            0         0.00                      17T5   
...................TGGCAGTGTCTTAGCTGGgTGTTt............................................................    39767_0_0_0_0_0_1       MATURE            1         0.93            0         0.00            1         1.28                      18G4   
...................TGGCAGTGTCgTAGCTGGTTGT..............................................................    20303_0_0_0_0_0_1       MATURE            1         0.93            0         0.00            1         1.28                     10G11   
...................TGGCAGTGTCTTAGCTGGTTGg..............................................................    21718_1_0_0_0_0_0       MATURE            1         0.93            1         3.45            0         0.00                        21   
...................TGGCAGTGTCTTAGCTGcTTGT..............................................................    25318_0_0_0_0_0_1       MATURE            1         0.93            0         0.00            1         1.28                      17C4   
                                                                                                                                            ----------                ----------                ----------   
                                                                                                                                                   107                        29                        78                                          
                                                                                                                                                                         (27.10)                   (72.90)                                       




((( SUMMARY )))

          -CAT-          -REST-           -ACT-         -TOTAL-        -TOTAL%-
     ----------      ----------      ----------      ----------      ----------
         MATURE              29              78             107         100.00%
                     ----------      ----------      ----------                
                             29              78             107                



[END]
