[BEGIN]
REFERENCE HAIRPIN
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ID : mmu-mir-34a
DESCRIPTION : mmu-mir-34a MI0000584 Mus musculus miR-34a stem-loop
CHROMOSOME : 4
SPAN : 149442563 - 149442664
LENGTH : 102
SEQUENCE : CCAGCTGTGAGTAATTCTTTGGCAGTGTCTTAGCTGGTTGTTGTGAGTATTAGCTAAGGAAGCAATCAGCAAGTATACTGCCCTAGAAGTGCTGCACATTGT
OVERHANG THRESHOLD : 40%
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TARGET
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CATEGORY : MATURE
ID : mmu-miR-34a
ACCID : MI0000584
PARENT : mmu-mir-34a
CHROMOSOME : 4
START : 149442563
STOP : 149442664
OFFSET : 20..41
SEQUENCE : TGGCAGTGTCTTAGCTGGTTGT
STRAND : +
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*** MATURE ***
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CCAGCTGTGAGTAATTCTTTGGCAGTGTCTTAGCTGGTTGTTGTGAGTATTAGCTAAGGAAGCAATCAGCAAGTATACTGCCCTAGAAGTGCTGCACATTGT REF 4 149442563 - 149442664
TGGCAGTGTCTTAGCTGGTTGT MATURE 4 149442583 - 149442705 mmu-miR-34a +
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-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
...................TGGCAGTGTCTTAGCTGGTTGT.............................................................. 27661_6_0_0_0_0_25 MATURE 31 28.97 6 20.69 25 32.05 22
...................TGGCAGTGTCTTAGCTGaTTGT.............................................................. 26228_3_0_0_0_0_10 MATURE 13 12.15 3 10.34 10 12.82 17A4
...................TGGCAGTGTCTTAGCTaGTTGT.............................................................. 25805_3_0_0_0_0_6 MATURE 9 8.41 3 10.34 6 7.69 16A5
...................TGGCAGTGTCTTAGCTGGTTGTTt............................................................ 40141_5_0_0_0_0_3 MATURE 8 7.48 5 17.24 3 3.85 23
...................TGGCAGTGTCTTAGCTGGTaGT.............................................................. 35888_1_0_0_0_0_5 MATURE 6 5.61 1 3.45 5 6.41 19A2
...................TGGCAGTGTCTTAGCTGGTTGTT............................................................. 39090_2_0_0_0_0_4 MATURE 6 5.61 2 6.90 4 5.13 23
...................TGGCAGTGTCTTAGCTcGTTGT.............................................................. 14518_1_0_0_0_0_5 MATURE 6 5.61 1 3.45 5 6.41 16C5
...................TGGCAGTGTCTTAGCTGGaTGT.............................................................. 9360_0_0_0_0_0_3 MATURE 3 2.80 0 0.00 3 3.85 18A3
...................TGGCAGTGTCTTAGCTGaTTGTT............................................................. 40311_0_0_0_0_0_3 MATURE 3 2.80 0 0.00 3 3.85 17A5
...................TGGCAGTGTCTTAGCTGtTTGT.............................................................. 41597_1_0_0_0_0_2 MATURE 3 2.80 1 3.45 2 2.56 17T4
...................TGGCAGTGTCTTAGCTGGTgGTTt............................................................ 22733_2_0_0_0_0_0 MATURE 2 1.87 2 6.90 0 0.00 19G3
...................TGGCAGTGTCTTAGCTGGTTG............................................................... 38586_0_0_0_0_0_2 MATURE 2 1.87 0 0.00 2 2.56 21
...................TGGCAGTGTCTTAGCTGaTTGTc............................................................. 36742_2_0_0_0_0_0 MATURE 2 1.87 2 6.90 0 0.00 17A4
...................TGGCAGTGTCTTAGCTGGTTaTT............................................................. 32988_0_0_0_0_0_2 MATURE 2 1.87 0 0.00 2 2.56 20A2
...................TGGCAGTGTCTTAGCTGGTT................................................................ 5235_0_0_0_0_0_2 MATURE 2 1.87 0 0.00 2 2.56 20
...................TGGCAGTGTCTTAGCTGaTTGTa............................................................. 546_0_0_0_0_0_1 MATURE 1 0.93 0 0.00 1 1.28 17A4
...................TGGCAGTGTCTTAGCTGGTTGTa............................................................. 41829_0_0_0_0_0_1 MATURE 1 0.93 0 0.00 1 1.28 22
...................TGGCAGTGTCTTAGCTaGTTG............................................................... 22284_1_0_0_0_0_0 MATURE 1 0.93 1 3.45 0 0.00 16A4
...................TGGCAGTGTCTTAGCTGGTTGTg............................................................. 3560_0_0_0_0_0_1 MATURE 1 0.93 0 0.00 1 1.28 22
...................TGGCAGTGTCTTAGCTGtTTGTT............................................................. 9727_1_0_0_0_0_0 MATURE 1 0.93 1 3.45 0 0.00 17T5
...................TGGCAGTGTCTTAGCTGGgTGTTt............................................................ 39767_0_0_0_0_0_1 MATURE 1 0.93 0 0.00 1 1.28 18G4
...................TGGCAGTGTCgTAGCTGGTTGT.............................................................. 20303_0_0_0_0_0_1 MATURE 1 0.93 0 0.00 1 1.28 10G11
...................TGGCAGTGTCTTAGCTGGTTGg.............................................................. 21718_1_0_0_0_0_0 MATURE 1 0.93 1 3.45 0 0.00 21
...................TGGCAGTGTCTTAGCTGcTTGT.............................................................. 25318_0_0_0_0_0_1 MATURE 1 0.93 0 0.00 1 1.28 17C4
---------- ---------- ----------
107 29 78
(27.10) (72.90)
((( SUMMARY )))
-CAT- -REST- -ACT- -TOTAL- -TOTAL%-
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MATURE 29 78 107 100.00%
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29 78 107
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