[BEGIN]

REFERENCE HAIRPIN
*********************************************************************************************************************
ID                 : mmu-mir-345
DESCRIPTION        : mmu-mir-345 MI0000632 Mus musculus miR-345 stem-loop
CHROMOSOME         : 12
SPAN               : 110075183 - 110075278
LENGTH             : 96
SEQUENCE           : ACCCAAGTCCAGGCCTGCTGACCCCTAGTCCAGTGCTTGTGGTGGCTACTGGGCCCTGAACTAGGGGTCTGGAGACCTGGGTTTGATCTCCACAGG
OVERHANG THRESHOLD : 40%
*********************************************************************************************************************


TARGET
******************************
CATEGORY   : MATURE-3P
ID         : mmu-miR-345-3p
ACCID      : MI0000632
PARENT     : mmu-mir-345
CHROMOSOME : 12
START      : 110075183
STOP       : 110075278
OFFSET     : 55..76
SEQUENCE   : CCTGAACTAGGGGTCTGGAGAC
STRAND     : +
******************************


TARGET
******************************
CATEGORY   : MATURE-5P
ID         : mmu-miR-345-5p
ACCID      : MI0000632
PARENT     : mmu-mir-345
CHROMOSOME : 12
START      : 110075183
STOP       : 110075278
OFFSET     : 17..38
SEQUENCE   : GCTGACCCCTAGTCCAGTGCTT
STRAND     : +
******************************



*** MATURE-5P ***
________________________________________________________________________________________________
ACCCAAGTCCAGGCCTGCTGACCCCTAGTCCAGTGCTTGTGGTGGCTACTGGGCCCTGAACTAGGGGTCTGGAGACCTGGGTTTGATCTCCACAGG REF                  12                   110075183 - 110075278 
                                                      CCTGAACTAGGGGTCTGGAGAC                     MATURE-3P            12                   110075238 - 110075354 mmu-miR-345-3p       +                    
                GCTGACCCCTAGTCCAGTGCTT                                                           MATURE-5P            12                   110075200 - 110075316 mmu-miR-345-5p       +                    
________________________________________________________________________________________________

                                                                                            -SEQ-                 -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
...............TGCTGACCCCTAGTCCAGTGCTTt..........................................................       1660_3_0_0_0_0_6    MATURE-5P            9         9.68            3         7.14            6        11.76                        23   
................GCTGACCCCTAGTCCAGTGCT............................................................      16525_1_0_0_0_0_6    MATURE-5P            7         7.53            1         2.38            6        11.76                        21   
................GCTGACCCCTAGTCCAGTGC.............................................................      38647_6_0_0_0_0_1    MATURE-5P            7         7.53            6        14.29            1         1.96                        20   
................GCTGACCCCTAGTCCAGTGCTTt..........................................................      14323_1_0_0_0_0_5    MATURE-5P            6         6.45            1         2.38            5         9.80                        22   
...............TGCTGACCCCTAGTCCAGTGCTT...........................................................      19254_3_0_0_0_0_2    MATURE-5P            5         5.38            3         7.14            2         3.92                        23   
...........GGCgTGCTGACCCCTAGTCCAGTGC.............................................................      39579_5_0_0_0_0_0    MATURE-5P            5         5.38            5        11.90            0         0.00                      3G21   
................GCTGACCCCTAGTCCAGTaCT............................................................      37668_1_0_0_0_0_3    MATURE-5P            4         4.30            1         2.38            3         5.88                      18A2   
............GCgTGCTGACCCCTAGTCCAGTGCT............................................................      44126_0_0_0_0_0_3    MATURE-5P            3         3.23            0         0.00            3         5.88                      2G22   
................GCTGACCCCTAGTCCAGTGCTT...........................................................      31304_1_0_0_0_0_2    MATURE-5P            3         3.23            1         2.38            2         3.92                        22   
................GCTGACCCCTAGTCCAGTaCTT...........................................................      33427_0_0_0_0_0_3    MATURE-5P            3         3.23            0         0.00            3         5.88                      18A3   
...............TGCTGACCCCTAGTCCAGTaCTT...........................................................      25151_1_0_0_0_0_1    MATURE-5P            2         2.15            1         2.38            1         1.96                      19A3   
................GCTGACCCCTAGTCCAaTGCTT...........................................................      33661_0_0_0_0_0_2    MATURE-5P            2         2.15            0         0.00            2         3.92                      16A5   
................GCTGACCCCTAGTCCtGTGCT............................................................      39652_0_0_0_0_0_2    MATURE-5P            2         2.15            0         0.00            2         3.92                      15T5   
................GCTGACCCCTAGTCCAaTGCT............................................................      43685_0_0_0_0_0_2    MATURE-5P            2         2.15            0         0.00            2         3.92                      16A4   
...........GGCgTGCTGACCCCTAGTCCAGTGt.............................................................      22433_1_0_0_0_0_1    MATURE-5P            2         2.15            1         2.38            1         1.96                      3G20   
...............TGCTGACCCCTAGTCCAGTGC.............................................................      37777_2_0_0_0_0_0    MATURE-5P            2         2.15            2         4.76            0         0.00                        21   
...............TGCTGACCCCTAGTCCAcTGCTT...........................................................      37068_2_0_0_0_0_0    MATURE-5P            2         2.15            2         4.76            0         0.00                      17C5   
................GCTGACCCCTAGTCCAGcGCT............................................................      41818_1_0_0_0_0_1    MATURE-5P            2         2.15            1         2.38            1         1.96                      17C3   
...........GGCgTGCTGACCCCTAGTCCAGTGa.............................................................      34953_1_0_0_0_0_0    MATURE-5P            1         1.08            1         2.38            0         0.00                      3G20   
...............TGCTGACCCCTAGTCCAGTGCTa...........................................................       3481_1_0_0_0_0_0    MATURE-5P            1         1.08            1         2.38            0         0.00                        22   
...............TGCTGACCCCTAGTCCAaTGC.............................................................      43859_1_0_0_0_0_0    MATURE-5P            1         1.08            1         2.38            0         0.00                      17A3   
................GCTGACCCCTAGTCCAGTGt.............................................................       3241_0_0_0_0_0_1    MATURE-5P            1         1.08            0         0.00            1         1.96                        19   
................GCTGACCCCTAGTCCAaTGCTa...........................................................      28668_1_0_0_0_0_0    MATURE-5P            1         1.08            1         2.38            0         0.00                      16A4   
...............TGCTGACCCCTAGTCCAGTGCT............................................................       2087_0_0_0_0_0_1    MATURE-5P            1         1.08            0         0.00            1         1.96                        22   
...............TGCTGACCCCTAGTCCtGTGCT............................................................      39395_0_0_0_0_0_1    MATURE-5P            1         1.08            0         0.00            1         1.96                      16T5   
...............TGCTGACCCCTAGTCCAGTGCTTa..........................................................      12694_1_0_0_0_0_0    MATURE-5P            1         1.08            1         2.38            0         0.00                        23   
...............TGCTGACCCCTAGTCCAGaGCTTt..........................................................      20635_1_0_0_0_0_0    MATURE-5P            1         1.08            1         2.38            0         0.00                      18A4   
..........AGGCgTGCTGACCCCTAGTCCAGT...............................................................        535_0_0_0_0_0_1    MATURE-5P            1         1.08            0         0.00            1         1.96                      4G19   
...............TGCTGACCtCTAGTCCAGTGCTTt..........................................................      12259_0_0_0_0_0_1    MATURE-5P            1         1.08            0         0.00            1         1.96                      8T14   
................GCTGACCCCTAGTCCgGTGCT............................................................      31852_0_0_0_0_0_1    MATURE-5P            1         1.08            0         0.00            1         1.96                      15G5   
..........AGGCgTGCTGACCCCTAGTCCAGg...............................................................       8048_0_0_0_0_0_1    MATURE-5P            1         1.08            0         0.00            1         1.96                      4G18   
................GCTGACCCCTAGTCCAGgGCTT...........................................................      30627_1_0_0_0_0_0    MATURE-5P            1         1.08            1         2.38            0         0.00                      17G4   
................GCTGACCCCTAGTCCAGTGCg............................................................       6298_0_0_0_0_0_1    MATURE-5P            1         1.08            0         0.00            1         1.96                        20   
.................CTGACCCCTAGTCCAGTGC.............................................................      36148_0_0_0_0_0_1    MATURE-5P            1         1.08            0         0.00            1         1.96                        19   
..................TGACCCCTAGTCCAGTGCTTGT.........................................................       7194_0_0_0_0_0_1    MATURE-5P            1         1.08            0         0.00            1         1.96                        22   
................GCTGACCCCTAGTCCAGTGCTc...........................................................      10897_1_0_0_0_0_0    MATURE-5P            1         1.08            1         2.38            0         0.00                        21   
................GCTGACCCCTAGTCCAtTGCT............................................................        225_1_0_0_0_0_0    MATURE-5P            1         1.08            1         2.38            0         0.00                      16T4   
...............TGCTGACCCCTAGTCCAGcGCTTG..........................................................       5257_1_0_0_0_0_0    MATURE-5P            1         1.08            1         2.38            0         0.00                      18C5   
...............TGCTGACCCCTAGTCCAaTGCTg...........................................................       6130_1_0_0_0_0_0    MATURE-5P            1         1.08            1         2.38            0         0.00                      17A4   
................GCTGACtCCTAGTCCAGTGCT............................................................      16598_0_0_0_0_0_1    MATURE-5P            1         1.08            0         0.00            1         1.96                      6T14   
...............TGCTGACCCCTAGTCCAGTGCaTG..........................................................      20569_1_0_0_0_0_0    MATURE-5P            1         1.08            1         2.38            0         0.00                      21A2   
...............TGCTGACCCCTAGTCCAGaGC.............................................................       1315_1_0_0_0_0_0    MATURE-5P            1         1.08            1         2.38            0         0.00                      18A2   
..................TGACCCCTAGTCCAGTGCTTGTt........................................................      31093_1_0_0_0_0_0    MATURE-5P            1         1.08            1         2.38            0         0.00                        22   
                                                                                                                                        ----------                ----------                ----------   
                                                                                                                                                93                        42                        51                                          
                                                                                                                                                                     (45.16)                   (54.84)                                       




((( SUMMARY )))

          -CAT-          -REST-           -ACT-         -TOTAL-        -TOTAL%-
     ----------      ----------      ----------      ----------      ----------
      MATURE-5P              42              51              93         100.00%
                     ----------      ----------      ----------                
                             42              51              93                



[END]
