[BEGIN]
REFERENCE HAIRPIN
*********************************************************************************************************************
ID : mmu-mir-345
DESCRIPTION : mmu-mir-345 MI0000632 Mus musculus miR-345 stem-loop
CHROMOSOME : 12
SPAN : 110075183 - 110075278
LENGTH : 96
SEQUENCE : ACCCAAGTCCAGGCCTGCTGACCCCTAGTCCAGTGCTTGTGGTGGCTACTGGGCCCTGAACTAGGGGTCTGGAGACCTGGGTTTGATCTCCACAGG
OVERHANG THRESHOLD : 40%
*********************************************************************************************************************
TARGET
******************************
CATEGORY : MATURE-3P
ID : mmu-miR-345-3p
ACCID : MI0000632
PARENT : mmu-mir-345
CHROMOSOME : 12
START : 110075183
STOP : 110075278
OFFSET : 55..76
SEQUENCE : CCTGAACTAGGGGTCTGGAGAC
STRAND : +
******************************
TARGET
******************************
CATEGORY : MATURE-5P
ID : mmu-miR-345-5p
ACCID : MI0000632
PARENT : mmu-mir-345
CHROMOSOME : 12
START : 110075183
STOP : 110075278
OFFSET : 17..38
SEQUENCE : GCTGACCCCTAGTCCAGTGCTT
STRAND : +
******************************
*** MATURE-5P ***
________________________________________________________________________________________________
ACCCAAGTCCAGGCCTGCTGACCCCTAGTCCAGTGCTTGTGGTGGCTACTGGGCCCTGAACTAGGGGTCTGGAGACCTGGGTTTGATCTCCACAGG REF 12 110075183 - 110075278
CCTGAACTAGGGGTCTGGAGAC MATURE-3P 12 110075238 - 110075354 mmu-miR-345-3p +
GCTGACCCCTAGTCCAGTGCTT MATURE-5P 12 110075200 - 110075316 mmu-miR-345-5p +
________________________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
...............TGCTGACCCCTAGTCCAGTGCTTt.......................................................... 1660_3_0_0_0_0_6 MATURE-5P 9 9.68 3 7.14 6 11.76 23
................GCTGACCCCTAGTCCAGTGCT............................................................ 16525_1_0_0_0_0_6 MATURE-5P 7 7.53 1 2.38 6 11.76 21
................GCTGACCCCTAGTCCAGTGC............................................................. 38647_6_0_0_0_0_1 MATURE-5P 7 7.53 6 14.29 1 1.96 20
................GCTGACCCCTAGTCCAGTGCTTt.......................................................... 14323_1_0_0_0_0_5 MATURE-5P 6 6.45 1 2.38 5 9.80 22
...............TGCTGACCCCTAGTCCAGTGCTT........................................................... 19254_3_0_0_0_0_2 MATURE-5P 5 5.38 3 7.14 2 3.92 23
...........GGCgTGCTGACCCCTAGTCCAGTGC............................................................. 39579_5_0_0_0_0_0 MATURE-5P 5 5.38 5 11.90 0 0.00 3G21
................GCTGACCCCTAGTCCAGTaCT............................................................ 37668_1_0_0_0_0_3 MATURE-5P 4 4.30 1 2.38 3 5.88 18A2
............GCgTGCTGACCCCTAGTCCAGTGCT............................................................ 44126_0_0_0_0_0_3 MATURE-5P 3 3.23 0 0.00 3 5.88 2G22
................GCTGACCCCTAGTCCAGTGCTT........................................................... 31304_1_0_0_0_0_2 MATURE-5P 3 3.23 1 2.38 2 3.92 22
................GCTGACCCCTAGTCCAGTaCTT........................................................... 33427_0_0_0_0_0_3 MATURE-5P 3 3.23 0 0.00 3 5.88 18A3
...............TGCTGACCCCTAGTCCAGTaCTT........................................................... 25151_1_0_0_0_0_1 MATURE-5P 2 2.15 1 2.38 1 1.96 19A3
................GCTGACCCCTAGTCCAaTGCTT........................................................... 33661_0_0_0_0_0_2 MATURE-5P 2 2.15 0 0.00 2 3.92 16A5
................GCTGACCCCTAGTCCtGTGCT............................................................ 39652_0_0_0_0_0_2 MATURE-5P 2 2.15 0 0.00 2 3.92 15T5
................GCTGACCCCTAGTCCAaTGCT............................................................ 43685_0_0_0_0_0_2 MATURE-5P 2 2.15 0 0.00 2 3.92 16A4
...........GGCgTGCTGACCCCTAGTCCAGTGt............................................................. 22433_1_0_0_0_0_1 MATURE-5P 2 2.15 1 2.38 1 1.96 3G20
...............TGCTGACCCCTAGTCCAGTGC............................................................. 37777_2_0_0_0_0_0 MATURE-5P 2 2.15 2 4.76 0 0.00 21
...............TGCTGACCCCTAGTCCAcTGCTT........................................................... 37068_2_0_0_0_0_0 MATURE-5P 2 2.15 2 4.76 0 0.00 17C5
................GCTGACCCCTAGTCCAGcGCT............................................................ 41818_1_0_0_0_0_1 MATURE-5P 2 2.15 1 2.38 1 1.96 17C3
...........GGCgTGCTGACCCCTAGTCCAGTGa............................................................. 34953_1_0_0_0_0_0 MATURE-5P 1 1.08 1 2.38 0 0.00 3G20
...............TGCTGACCCCTAGTCCAGTGCTa........................................................... 3481_1_0_0_0_0_0 MATURE-5P 1 1.08 1 2.38 0 0.00 22
...............TGCTGACCCCTAGTCCAaTGC............................................................. 43859_1_0_0_0_0_0 MATURE-5P 1 1.08 1 2.38 0 0.00 17A3
................GCTGACCCCTAGTCCAGTGt............................................................. 3241_0_0_0_0_0_1 MATURE-5P 1 1.08 0 0.00 1 1.96 19
................GCTGACCCCTAGTCCAaTGCTa........................................................... 28668_1_0_0_0_0_0 MATURE-5P 1 1.08 1 2.38 0 0.00 16A4
...............TGCTGACCCCTAGTCCAGTGCT............................................................ 2087_0_0_0_0_0_1 MATURE-5P 1 1.08 0 0.00 1 1.96 22
...............TGCTGACCCCTAGTCCtGTGCT............................................................ 39395_0_0_0_0_0_1 MATURE-5P 1 1.08 0 0.00 1 1.96 16T5
...............TGCTGACCCCTAGTCCAGTGCTTa.......................................................... 12694_1_0_0_0_0_0 MATURE-5P 1 1.08 1 2.38 0 0.00 23
...............TGCTGACCCCTAGTCCAGaGCTTt.......................................................... 20635_1_0_0_0_0_0 MATURE-5P 1 1.08 1 2.38 0 0.00 18A4
..........AGGCgTGCTGACCCCTAGTCCAGT............................................................... 535_0_0_0_0_0_1 MATURE-5P 1 1.08 0 0.00 1 1.96 4G19
...............TGCTGACCtCTAGTCCAGTGCTTt.......................................................... 12259_0_0_0_0_0_1 MATURE-5P 1 1.08 0 0.00 1 1.96 8T14
................GCTGACCCCTAGTCCgGTGCT............................................................ 31852_0_0_0_0_0_1 MATURE-5P 1 1.08 0 0.00 1 1.96 15G5
..........AGGCgTGCTGACCCCTAGTCCAGg............................................................... 8048_0_0_0_0_0_1 MATURE-5P 1 1.08 0 0.00 1 1.96 4G18
................GCTGACCCCTAGTCCAGgGCTT........................................................... 30627_1_0_0_0_0_0 MATURE-5P 1 1.08 1 2.38 0 0.00 17G4
................GCTGACCCCTAGTCCAGTGCg............................................................ 6298_0_0_0_0_0_1 MATURE-5P 1 1.08 0 0.00 1 1.96 20
.................CTGACCCCTAGTCCAGTGC............................................................. 36148_0_0_0_0_0_1 MATURE-5P 1 1.08 0 0.00 1 1.96 19
..................TGACCCCTAGTCCAGTGCTTGT......................................................... 7194_0_0_0_0_0_1 MATURE-5P 1 1.08 0 0.00 1 1.96 22
................GCTGACCCCTAGTCCAGTGCTc........................................................... 10897_1_0_0_0_0_0 MATURE-5P 1 1.08 1 2.38 0 0.00 21
................GCTGACCCCTAGTCCAtTGCT............................................................ 225_1_0_0_0_0_0 MATURE-5P 1 1.08 1 2.38 0 0.00 16T4
...............TGCTGACCCCTAGTCCAGcGCTTG.......................................................... 5257_1_0_0_0_0_0 MATURE-5P 1 1.08 1 2.38 0 0.00 18C5
...............TGCTGACCCCTAGTCCAaTGCTg........................................................... 6130_1_0_0_0_0_0 MATURE-5P 1 1.08 1 2.38 0 0.00 17A4
................GCTGACtCCTAGTCCAGTGCT............................................................ 16598_0_0_0_0_0_1 MATURE-5P 1 1.08 0 0.00 1 1.96 6T14
...............TGCTGACCCCTAGTCCAGTGCaTG.......................................................... 20569_1_0_0_0_0_0 MATURE-5P 1 1.08 1 2.38 0 0.00 21A2
...............TGCTGACCCCTAGTCCAGaGC............................................................. 1315_1_0_0_0_0_0 MATURE-5P 1 1.08 1 2.38 0 0.00 18A2
..................TGACCCCTAGTCCAGTGCTTGTt........................................................ 31093_1_0_0_0_0_0 MATURE-5P 1 1.08 1 2.38 0 0.00 22
---------- ---------- ----------
93 42 51
(45.16) (54.84)
((( SUMMARY )))
-CAT- -REST- -ACT- -TOTAL- -TOTAL%-
---------- ---------- ---------- ---------- ----------
MATURE-5P 42 51 93 100.00%
---------- ---------- ----------
42 51 93
[END]