[BEGIN]
REFERENCE HAIRPIN
*********************************************************************************************************************
ID : mmu-mir-339
DESCRIPTION : mmu-mir-339 MI0000621 Mus musculus miR-339 stem-loop
CHROMOSOME : 5
SPAN : 139845604 - 139845699
LENGTH : 96
SEQUENCE : ACGGGGTGGCCACTATCCCTGTCCTCCAGGAGCTCACGTATGCCTGCCTGTGAGCGCCTCGGCGACAGAGCCGGTGTCCACCCCTGCACTGTCCAC
OVERHANG THRESHOLD : 40%
*********************************************************************************************************************
TARGET
******************************
CATEGORY : MATURE-3P
ID : mmu-miR-339-3p
ACCID : MI0000621
PARENT : mmu-mir-339
CHROMOSOME : 5
START : 139845604
STOP : 139845699
OFFSET : 51..73
SEQUENCE : TGAGCGCCTCGGCGACAGAGCCG
STRAND : -
******************************
TARGET
******************************
CATEGORY : MATURE-5P
ID : mmu-miR-339-5p
ACCID : MI0000621
PARENT : mmu-mir-339
CHROMOSOME : 5
START : 139845604
STOP : 139845699
OFFSET : 16..38
SEQUENCE : TCCCTGTCCTCCAGGAGCTCACG
STRAND : -
******************************
*** MATURE-5P ***
________________________________________________________________________________________________
ACGGGGTGGCCACTATCCCTGTCCTCCAGGAGCTCACGTATGCCTGCCTGTGAGCGCCTCGGCGACAGAGCCGGTGTCCACCCCTGCACTGTCCAC REF 5 139845604 - 139845699
TGAGCGCCTCGGCGACAGAGCCG MATURE-3P 5 139845655 - 139845772 mmu-miR-339-3p -
TCCCTGTCCTCCAGGAGCTCACG MATURE-5P 5 139845620 - 139845737 mmu-miR-339-5p -
________________________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
...............TCCCTGTCCTCCAGGAaCTCAt............................................................ 32039_16_0_0_0_0_18 MATURE-5P 34 18.58 16 17.02 18 20.22 16A4
...............TCCCTGTCCTCCAGGAaCTCA............................................................. 40958_11_0_0_0_0_9 MATURE-5P 20 10.93 11 11.70 9 10.11 16A4
...............TCCCTGTCCTCCAGGAaCTCAC............................................................ 40443_8_0_0_0_0_8 MATURE-5P 16 8.74 8 8.51 8 8.99 16A5
...............TCCCTGTCCTCCAGGAGCTCACt........................................................... 34761_6_0_0_0_0_7 MATURE-5P 13 7.10 6 6.38 7 7.87 22
...............TCCCTGTCCTCCAGGAGCTCACa........................................................... 40034_4_0_0_0_0_4 MATURE-5P 8 4.37 4 4.26 4 4.49 22
...............TCCCTGTCCTCCAGGAGCTCA............................................................. 33051_4_0_0_0_0_3 MATURE-5P 7 3.83 4 4.26 3 3.37 21
............CTgTCCCTGTCCTCCAGGAGCTC.............................................................. 27481_1_0_0_0_0_6 MATURE-5P 7 3.83 1 1.06 6 6.74 2G20
...............TCCCTGTCCTCCAGGAGCTCACGT.......................................................... 16897_5_0_0_0_0_1 MATURE-5P 6 3.28 5 5.32 1 1.12 24
............CTgTCCCTGTCCTCCAGGAGCTCAt............................................................ 6551_3_0_0_0_0_2 MATURE-5P 5 2.73 3 3.19 2 2.25 2G21
...............TCCCTGTCCTCCAGGAGCcCAt............................................................ 41141_3_0_0_0_0_2 MATURE-5P 5 2.73 3 3.19 2 2.25 18C2
...............TCCCTGTCCTCCAGGAGtTCACG........................................................... 4130_2_0_0_0_0_2 MATURE-5P 4 2.19 2 2.13 2 2.25 17T5
...............TCCCTGTCCTCCAGGAtCTCAC............................................................ 42135_1_0_0_0_0_3 MATURE-5P 4 2.19 1 1.06 3 3.37 16T5
...............TCCCTGTCCTCCAGGAGCTCACG........................................................... 32061_2_0_0_0_0_1 MATURE-5P 3 1.64 2 2.13 1 1.12 23
...............TCCCTGTCCTCCAGGAcCTCAC............................................................ 40700_1_0_0_0_0_2 MATURE-5P 3 1.64 1 1.06 2 2.25 16C5
...............TCCCTGTCCTCCAGGAGCTCAt............................................................ 41840_1_0_0_0_0_2 MATURE-5P 3 1.64 1 1.06 2 2.25 21
...............TCCCTGTCCTCCAGGAGCTCAa............................................................ 34037_2_0_0_0_0_1 MATURE-5P 3 1.64 2 2.13 1 1.12 21
...............TCCCTGTCCTCCAGGAGCTCACc........................................................... 27126_3_0_0_0_0_0 MATURE-5P 3 1.64 3 3.19 0 0.00 22
...............TCCCTGTCCTCCAGGAGCTCt............................................................. 37193_1_0_0_0_0_1 MATURE-5P 2 1.09 1 1.06 1 1.12 20
...............TCCCTGTCCTCCAGGAaCTCAa............................................................ 29612_2_0_0_0_0_0 MATURE-5P 2 1.09 2 2.13 0 0.00 16A4
...............TCCCTGTCCTCCAGGAGCTCACGc.......................................................... 20229_1_0_0_0_0_1 MATURE-5P 2 1.09 1 1.06 1 1.12 23
...............TCCCTGTCCTCCAGGAGCTCcCGT.......................................................... 2675_1_0_0_0_0_1 MATURE-5P 2 1.09 1 1.06 1 1.12 20C3
...............TCCCTGTCCTCCAGGAGCTC.............................................................. 27996_0_0_0_0_0_2 MATURE-5P 2 1.09 0 0.00 2 2.25 20
...............TCCCTGTCCTCCAGGAGCTCACGTA......................................................... 1596_1_0_0_0_0_1 MATURE-5P 2 1.09 1 1.06 1 1.12 25
...............TCCCTGTCCTCCAGGAGaTCACG........................................................... 8443_1_0_0_0_0_1 MATURE-5P 2 1.09 1 1.06 1 1.12 17A5
...............TCCCTGTCCTCCAGGAcCTCA............................................................. 17170_2_0_0_0_0_0 MATURE-5P 2 1.09 2 2.13 0 0.00 16C4
...............TCCCTGTCCTCCAGGAGCTCACGg.......................................................... 5287_1_0_0_0_0_0 MATURE-5P 1 0.55 1 1.06 0 0.00 23
.............TATCCCTGTCCTCCAGGAGCTaACa........................................................... 7525_1_0_0_0_0_0 MATURE-5P 1 0.55 1 1.06 0 0.00 21A2
...............TCCCTGTCCTCCAGGAGCcCACG........................................................... 41776_0_0_0_0_0_1 MATURE-5P 1 0.55 0 0.00 1 1.12 18C4
............CTgTCCCTGTCCTCCAGGAGCTCAa............................................................ 28116_0_0_0_0_0_1 MATURE-5P 1 0.55 0 0.00 1 1.12 2G21
................CCCTGTCCTCCAGGAGCTCt............................................................. 8334_0_0_0_0_0_1 MATURE-5P 1 0.55 0 0.00 1 1.12 19
...............TCCCTGTCCTCCAGGAGCgCAC............................................................ 668_1_0_0_0_0_0 MATURE-5P 1 0.55 1 1.06 0 0.00 18G3
................CCCTGTCCTCCAGGAGCTCcCGTAT........................................................ 39567_0_0_0_0_0_1 MATURE-5P 1 0.55 0 0.00 1 1.12 19C5
...............TCCCTGTCCTCCAGGAGCTCgCG........................................................... 12382_0_0_0_0_0_1 MATURE-5P 1 0.55 0 0.00 1 1.12 20G2
...............TCCCTGTCCTCCAGGAcCTCAa............................................................ 4614_0_0_0_0_0_1 MATURE-5P 1 0.55 0 0.00 1 1.12 16C4
................CCCTGTCCTCCAGGAGCTCACGTAa........................................................ 110_0_0_0_0_0_1 MATURE-5P 1 0.55 0 0.00 1 1.12 24
...............TCCCTGTCCTCCAGGAGCaCACG........................................................... 42209_1_0_0_0_0_0 MATURE-5P 1 0.55 1 1.06 0 0.00 18A4
...............TCCCTGTCCTCCAGGAGCcCA............................................................. 35744_1_0_0_0_0_0 MATURE-5P 1 0.55 1 1.06 0 0.00 18C2
...............TCCCTGTCCTCCAGGAtCTCA............................................................. 25046_0_0_0_0_0_1 MATURE-5P 1 0.55 0 0.00 1 1.12 16T4
............CTcTCCCTGTCCTCCAGGAGCTCAC............................................................ 12430_1_0_0_0_0_0 MATURE-5P 1 0.55 1 1.06 0 0.00 2C22
................CCCTGTCCTCCAGGAGCTCACGTAT........................................................ 17259_1_0_0_0_0_0 MATURE-5P 1 0.55 1 1.06 0 0.00 25
...............TCCCTGTCCTCCAGGAGCcCAa............................................................ 8618_0_0_0_0_0_1 MATURE-5P 1 0.55 0 0.00 1 1.12 18C2
...................TGTCCTCCAGGAGCTCACGT.......................................................... 28543_0_0_0_0_0_1 MATURE-5P 1 0.55 0 0.00 1 1.12 20
...............TCCCTGTCCTCCAGGAGCTCACGa.......................................................... 6982_1_0_0_0_0_0 MATURE-5P 1 0.55 1 1.06 0 0.00 23
............CTgTCCCTGTCCTCCAGGAGCTCA............................................................. 22587_0_0_0_0_0_1 MATURE-5P 1 0.55 0 0.00 1 1.12 2G21
...............TCCCTGTCCTCCAGGAGCTCAC............................................................ 34182_1_0_0_0_0_0 MATURE-5P 1 0.55 1 1.06 0 0.00 22
...............TCCCTGTCCTCCAGGAGCcCACa........................................................... 7507_1_0_0_0_0_0 MATURE-5P 1 0.55 1 1.06 0 0.00 18C3
...............TCCCTGTCCTCCAGGAGCTaACt........................................................... 36507_1_0_0_0_0_0 MATURE-5P 1 0.55 1 1.06 0 0.00 19A2
...............TCCCTGTCCTCCAGGAGCTCcCGc.......................................................... 21726_1_0_0_0_0_0 MATURE-5P 1 0.55 1 1.06 0 0.00 20C2
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183 94 89
(51.37) (48.63)
((( SUMMARY )))
-CAT- -REST- -ACT- -TOTAL- -TOTAL%-
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MATURE-5P 94 89 183 100.00%
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94 89 183
[END]