[BEGIN]

REFERENCE HAIRPIN
***********************************************************************************************************************
ID                 : mmu-mir-335
DESCRIPTION        : mmu-mir-335 MI0000817 Mus musculus miR-335 stem-loop
CHROMOSOME         : 6
SPAN               : 30691299 - 30691396
LENGTH             : 98
SEQUENCE           : TCTTTTGGGCGGGGGTCAAGAGCAATAACGAAAAATGTTTGTTTTTCGTAAACCGTTTTTCATTATTGCTCCTGACCCCCTCTCATGGGTTATAGCCA
OVERHANG THRESHOLD : 40%
***********************************************************************************************************************


TARGET
******************************
CATEGORY   : MATURE-3P
ID         : mmu-miR-335-3p
ACCID      : MI0000817
PARENT     : mmu-mir-335
CHROMOSOME : 6
START      : 30691299
STOP       : 30691396
OFFSET     : 56..77
SEQUENCE   : TTTTTCATTATTGCTCCTGACC
STRAND     : +
******************************


TARGET
******************************
CATEGORY   : MATURE-5P
ID         : mmu-miR-335-5p
ACCID      : MI0000817
PARENT     : mmu-mir-335
CHROMOSOME : 6
START      : 30691299
STOP       : 30691396
OFFSET     : 16..38
SEQUENCE   : TCAAGAGCAATAACGAAAAATGT
STRAND     : +
******************************



*** MATURE-5P ***
__________________________________________________________________________________________________
TCTTTTGGGCGGGGGTCAAGAGCAATAACGAAAAATGTTTGTTTTTCGTAAACCGTTTTTCATTATTGCTCCTGACCCCCTCTCATGGGTTATAGCCA REF                  6                    30691299 - 30691396  
                                                       TTTTTCATTATTGCTCCTGACC                      MATURE-3P            6                    30691355 - 30691473  mmu-miR-335-3p       +                    
               TCAAGAGCAATAACGAAAAATGT                                                             MATURE-5P            6                    30691315 - 30691434  mmu-miR-335-5p       +                    
__________________________________________________________________________________________________

                                                                                              -SEQ-              -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
.............GGTCAAGAGCAATAACGAAAAATGT.............................................................   17294_0_0_0_0_0_1    MATURE-5P            1        50.00            0         0.00            1       100.00                        25   
..............GTCAAGAGCAATAACGAcAAATG..............................................................   21947_1_0_0_0_0_0    MATURE-5P            1        50.00            1       100.00            0         0.00                      17C5   
                                                                                                                                       ----------                ----------                ----------   
                                                                                                                                                2                         1                         1                                          
                                                                                                                                                                    (50.00)                   (50.00)                                       




((( SUMMARY )))

          -CAT-          -REST-           -ACT-         -TOTAL-        -TOTAL%-
     ----------      ----------      ----------      ----------      ----------
      MATURE-5P               1               1               2         100.00%
                     ----------      ----------      ----------                
                              1               1               2                



[END]
