[BEGIN]
REFERENCE HAIRPIN
***********************************************************************************************************************
ID : mmu-mir-335
DESCRIPTION : mmu-mir-335 MI0000817 Mus musculus miR-335 stem-loop
CHROMOSOME : 6
SPAN : 30691299 - 30691396
LENGTH : 98
SEQUENCE : TCTTTTGGGCGGGGGTCAAGAGCAATAACGAAAAATGTTTGTTTTTCGTAAACCGTTTTTCATTATTGCTCCTGACCCCCTCTCATGGGTTATAGCCA
OVERHANG THRESHOLD : 40%
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TARGET
******************************
CATEGORY : MATURE-3P
ID : mmu-miR-335-3p
ACCID : MI0000817
PARENT : mmu-mir-335
CHROMOSOME : 6
START : 30691299
STOP : 30691396
OFFSET : 56..77
SEQUENCE : TTTTTCATTATTGCTCCTGACC
STRAND : +
******************************
TARGET
******************************
CATEGORY : MATURE-5P
ID : mmu-miR-335-5p
ACCID : MI0000817
PARENT : mmu-mir-335
CHROMOSOME : 6
START : 30691299
STOP : 30691396
OFFSET : 16..38
SEQUENCE : TCAAGAGCAATAACGAAAAATGT
STRAND : +
******************************
*** MATURE-5P ***
__________________________________________________________________________________________________
TCTTTTGGGCGGGGGTCAAGAGCAATAACGAAAAATGTTTGTTTTTCGTAAACCGTTTTTCATTATTGCTCCTGACCCCCTCTCATGGGTTATAGCCA REF 6 30691299 - 30691396
TTTTTCATTATTGCTCCTGACC MATURE-3P 6 30691355 - 30691473 mmu-miR-335-3p +
TCAAGAGCAATAACGAAAAATGT MATURE-5P 6 30691315 - 30691434 mmu-miR-335-5p +
__________________________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
.............GGTCAAGAGCAATAACGAAAAATGT............................................................. 17294_0_0_0_0_0_1 MATURE-5P 1 50.00 0 0.00 1 100.00 25
..............GTCAAGAGCAATAACGAcAAATG.............................................................. 21947_1_0_0_0_0_0 MATURE-5P 1 50.00 1 100.00 0 0.00 17C5
---------- ---------- ----------
2 1 1
(50.00) (50.00)
((( SUMMARY )))
-CAT- -REST- -ACT- -TOTAL- -TOTAL%-
---------- ---------- ---------- ---------- ----------
MATURE-5P 1 1 2 100.00%
---------- ---------- ----------
1 1 2
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