[BEGIN]
REFERENCE HAIRPIN
******************************************************************************************
ID : mmu-mir-33
DESCRIPTION : mmu-mir-33 MI0000707 Mus musculus miR-33 stem-loop
CHROMOSOME : 15
SPAN : 82028552 - 82028620
LENGTH : 69
SEQUENCE : CTGTGGTGCATTGTAGTTGCATTGCATGTTCTGGCAATACCTGTGCAATGTTTCCACAGTGCATCACGG
OVERHANG THRESHOLD : 40%
******************************************************************************************
TARGET
******************************
CATEGORY : MATURE
ID : mmu-miR-33
ACCID : MI0000707
PARENT : mmu-mir-33
CHROMOSOME : 15
START : 82028552
STOP : 82028620
OFFSET : 6..26
SEQUENCE : GTGCATTGTAGTTGCATTGCA
STRAND : +
******************************
TARGET
******************************
CATEGORY : MATURESTAR
ID : mmu-miR-33*
ACCID : MI0000707
PARENT : mmu-mir-33
CHROMOSOME : 15
START : 82028552
STOP : 82028620
OFFSET : 46..67
SEQUENCE : CAATGTTTCCACAGTGCATCAC
STRAND : +
******************************
*** MATURE ***
_____________________________________________________________________
CTGTGGTGCATTGTAGTTGCATTGCATGTTCTGGCAATACCTGTGCAATGTTTCCACAGTGCATCACGG REF 15 82028552 - 82028620
GTGCATTGTAGTTGCATTGCA MATURE 15 82028558 - 82028646 mmu-miR-33 +
CAATGTTTCCACAGTGCATCAC MATURESTAR 15 82028598 - 82028687 mmu-miR-33* +
_____________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
....GGTGCATTGTAGTTGCATTGCA............................................ 37266_18_0_0_0_0_54 MATURE 72 28.46 18 30.51 54 27.84 22
....GGTGCATTGTAGTTGCATTaCA............................................ 28867_7_0_0_0_0_12 MATURE 19 7.51 7 11.86 12 6.19 19A2
...TGGTGCATTGTAGTTGCATTGCA............................................ 35431_0_0_0_0_0_19 MATURE 19 7.51 0 0.00 19 9.79 23
....GGTGCATTGTAGTTGCgTTGCA............................................ 24407_2_0_0_0_0_10 MATURE 12 4.74 2 3.39 10 5.15 16G5
....GGTGCATTGTAGTTGCATTGCAa........................................... 39795_2_0_0_0_0_9 MATURE 11 4.35 2 3.39 9 4.64 22
...TGGTGCATTGTAGTTGCATTaCA............................................ 19036_2_0_0_0_0_5 MATURE 7 2.77 2 3.39 5 2.58 20A2
....GGTGCATTGTAGTTGCAaTGCA............................................ 20613_1_0_0_0_0_6 MATURE 7 2.77 1 1.69 6 3.09 17A4
....GGTGCATTGTAGTTGCAcTGCAa........................................... 23357_2_0_0_0_0_5 MATURE 7 2.77 2 3.39 5 2.58 17C4
....GGTGCATTGTAGTTGCATTGCg............................................ 9913_2_0_0_0_0_4 MATURE 6 2.37 2 3.39 4 2.06 21
....GGTGCATTGTAGTTGCAgTGCA............................................ 37481_0_0_0_0_0_5 MATURE 5 1.98 0 0.00 5 2.58 17G4
....GGTGCATTGTAGTTGCAcTGCA............................................ 23720_1_0_0_0_0_4 MATURE 5 1.98 1 1.69 4 2.06 17C4
....GGTGCATTGTAGTTGCATcGCA............................................ 11762_3_0_0_0_0_1 MATURE 4 1.58 3 5.08 1 0.52 18C3
.....GTGCATTGTAGTTGCAgTGCA............................................ 40720_0_0_0_0_0_3 MATURE 3 1.19 0 0.00 3 1.55 16G4
....GGTGCATTGTAGTTGCATTGCAT........................................... 44128_0_0_0_0_0_3 MATURE 3 1.19 0 0.00 3 1.55 23
....GGTGCATTGTAGTTGCATaGCA............................................ 5591_1_0_0_0_0_2 MATURE 3 1.19 1 1.69 2 1.03 18A3
....GGTGCATTGTAGTTGCATTGC............................................. 34903_0_0_0_0_0_3 MATURE 3 1.19 0 0.00 3 1.55 21
.....GTGCATTGTAGTTGCATTGCA............................................ 42036_0_0_0_0_0_3 MATURE 3 1.19 0 0.00 3 1.55 21
..GTGGTGCATTGTAGTTGCATTGCA............................................ 6106_1_0_0_0_0_2 MATURE 3 1.19 1 1.69 2 1.03 24
....GGTGCATTGTAGTTGCcTTGCA............................................ 27147_0_0_0_0_0_2 MATURE 2 0.79 0 0.00 2 1.03 16C5
....GGTGCATTGTAGTTGCATaGCAa........................................... 30045_2_0_0_0_0_0 MATURE 2 0.79 2 3.39 0 0.00 18A3
...TGGTGCATTGTAGTTGCAcTGCAT........................................... 14976_0_0_0_0_0_2 MATURE 2 0.79 0 0.00 2 1.03 18C5
.....GTGCATTGTAGTTGCATTGC............................................. 43893_2_0_0_0_0_0 MATURE 2 0.79 2 3.39 0 0.00 20
...TGGTGCATTGTAGTTGCAcTGCAa........................................... 18041_0_0_0_0_0_2 MATURE 2 0.79 0 0.00 2 1.03 18C4
...TGGTGCATTGTAGTTGCgTTGCA............................................ 3796_0_0_0_0_0_2 MATURE 2 0.79 0 0.00 2 1.03 17G5
....GGTGCATTGTAGTTGCAgTGCAa........................................... 41984_1_0_0_0_0_1 MATURE 2 0.79 1 1.69 1 0.52 17G4
...TGGTGCATTGTAGTTGCATTGCAa........................................... 17391_1_0_0_0_0_1 MATURE 2 0.79 1 1.69 1 0.52 23
....GGTGCATTGTAGTTGCATTaCAa........................................... 21669_0_0_0_0_0_2 MATURE 2 0.79 0 0.00 2 1.03 19A2
....GGTGCATTGTAGTTGCATTGCt............................................ 14664_1_0_0_0_0_1 MATURE 2 0.79 1 1.69 1 0.52 21
...TGGTGCATTGTAGTTGCATaGCA............................................ 34548_0_0_0_0_0_2 MATURE 2 0.79 0 0.00 2 1.03 19A3
....GGTGCATTGTAGTTGCATTG.............................................. 42145_1_0_0_0_0_1 MATURE 2 0.79 1 1.69 1 0.52 20
...TGGTGCATTGTAGTTGCATTGCc............................................ 13903_0_0_0_0_0_1 MATURE 1 0.40 0 0.00 1 0.52 22
...TGGTGCATTGTAGTTGCATTGCAT........................................... 5226_1_0_0_0_0_0 MATURE 1 0.40 1 1.69 0 0.00 24
....GGTGCATTGTAGTTGCATTa.............................................. 42981_0_0_0_0_0_1 MATURE 1 0.40 0 0.00 1 0.52 19
...TGGTGCATTGTAGTTGCATTaCAa........................................... 4115_1_0_0_0_0_0 MATURE 1 0.40 1 1.69 0 0.00 20A2
....GGTGCATTGTAGTTGCATcGC............................................. 385_0_0_0_0_0_1 MATURE 1 0.40 0 0.00 1 0.52 18C2
.....GTGCATTGTAGTTGCATgGCAa........................................... 14397_0_0_0_0_0_1 MATURE 1 0.40 0 0.00 1 0.52 17G3
...TGGTGCATTGTAGTTGCAgTGCA............................................ 28328_0_0_0_0_0_1 MATURE 1 0.40 0 0.00 1 0.52 18G4
...TGGTGCATTGTAGTTGCATTGCg............................................ 6554_0_0_0_0_0_1 MATURE 1 0.40 0 0.00 1 0.52 22
..GTGGTGCATTGTAGTTGCAcTGCAa........................................... 2405_0_0_0_0_0_1 MATURE 1 0.40 0 0.00 1 0.52 19C4
....GGTGCATTGTAGTTGCATTGa............................................. 17530_0_0_0_0_0_1 MATURE 1 0.40 0 0.00 1 0.52 20
....GGTGCATcGTAGTTGCATTGCA............................................ 3315_0_0_0_0_0_1 MATURE 1 0.40 0 0.00 1 0.52 7C14
....GGTGCATTGTAGTTGCATTtCA............................................ 21298_0_0_0_0_0_1 MATURE 1 0.40 0 0.00 1 0.52 19T2
....GGTGCATTGTAGTTGCAaTGCt............................................ 24347_0_0_0_0_0_1 MATURE 1 0.40 0 0.00 1 0.52 17A3
....GGTGCATTGTAGTTGCATcGCAc........................................... 24_0_0_0_0_0_1 MATURE 1 0.40 0 0.00 1 0.52 18C3
....GGTGCATTGTAGTTGCATTGCc............................................ 12974_0_0_0_0_0_1 MATURE 1 0.40 0 0.00 1 0.52 21
CTtTGGTGCATTGTAGTTGCATTGa............................................. 42834_0_0_0_0_0_1 MATURE 1 0.40 0 0.00 1 0.52 2T21
....GGTGCATTGTAGTTGCAaTGCc............................................ 12416_0_0_0_0_0_1 MATURE 1 0.40 0 0.00 1 0.52 17A3
.....GTGCATTGTAGTTGCATgGCA............................................ 18008_0_0_0_0_0_1 MATURE 1 0.40 0 0.00 1 0.52 17G3
...TGGTGCATTGTAGTTGCcTTGCA............................................ 17977_0_0_0_0_0_1 MATURE 1 0.40 0 0.00 1 0.52 17C5
....GGTGCATTGTAGTTGCATTcCA............................................ 1662_1_0_0_0_0_0 MATURE 1 0.40 1 1.69 0 0.00 19C2
...TGGTGCATTGTAGTTGCATTGCAg........................................... 26055_0_0_0_0_0_1 MATURE 1 0.40 0 0.00 1 0.52 23
....GGTGCATTGTAGTTGCgTTGCg............................................ 27107_0_0_0_0_0_1 MATURE 1 0.40 0 0.00 1 0.52 16G4
....GGTGCATTGTAGTTGCtTTGCA............................................ 4663_0_0_0_0_0_1 MATURE 1 0.40 0 0.00 1 0.52 16T5
....GGTGCATTGTAGTTGCATTaCAT........................................... 40702_0_0_0_0_0_1 MATURE 1 0.40 0 0.00 1 0.52 19A3
....GGTGtATTGTAGTTGCATTGC............................................. 14593_1_0_0_0_0_0 MATURE 1 0.40 1 1.69 0 0.00 4T16
....GGTGCATTGTAGTTGCATTGt............................................. 39059_0_0_0_0_0_1 MATURE 1 0.40 0 0.00 1 0.52 20
...TGGTGCATTGTAGTTGCATgGCAa........................................... 35239_0_0_0_0_0_1 MATURE 1 0.40 0 0.00 1 0.52 19G3
..GTGGTGCATTGTAGTTGCATTGCAa........................................... 10244_1_0_0_0_0_0 MATURE 1 0.40 1 1.69 0 0.00 24
.....GTGCATTGTAGTTGCAgTGCAa........................................... 32966_1_0_0_0_0_0 MATURE 1 0.40 1 1.69 0 0.00 16G4
....GGTGCATTGTAGTTGCAcTGCg............................................ 4193_1_0_0_0_0_0 MATURE 1 0.40 1 1.69 0 0.00 17C3
....GGTGCATTGTAGTTGCATgGCA............................................ 24596_0_0_0_0_0_1 MATURE 1 0.40 0 0.00 1 0.52 18G3
....GGTGCATTGTAGTTGtATTGC............................................. 23063_0_0_0_0_0_1 MATURE 1 0.40 0 0.00 1 0.52 15T5
....GGTGCATTGTAGTTGCATTGtATa.......................................... 4699_1_0_0_0_0_0 MATURE 1 0.40 1 1.69 0 0.00 20T2
.....GTGCATTGTAGTTGCATaGCA............................................ 12103_0_0_0_0_0_1 MATURE 1 0.40 0 0.00 1 0.52 17A3
.....GTGCATTGTAGTTGCATaGCAa........................................... 26209_1_0_0_0_0_0 MATURE 1 0.40 1 1.69 0 0.00 17A3
...TGGTGCATTGTAGTTGCATcGCAa........................................... 26312_0_0_0_0_0_1 MATURE 1 0.40 0 0.00 1 0.52 19C3
....GGTGCATTGTAGTTGCAgTGCt............................................ 32846_0_0_0_0_0_1 MATURE 1 0.40 0 0.00 1 0.52 17G3
---------- ---------- ----------
253 59 194
(23.32) (76.68)
*** MATURESTAR ***
_____________________________________________________________________
CTGTGGTGCATTGTAGTTGCATTGCATGTTCTGGCAATACCTGTGCAATGTTTCCACAGTGCATCACGG REF 15 82028552 - 82028620
GTGCATTGTAGTTGCATTGCA MATURE 15 82028558 - 82028646 mmu-miR-33 +
CAATGTTTCCACAGTGCATCAC MATURESTAR 15 82028598 - 82028687 mmu-miR-33* +
_____________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
............................................GCAATGTTTCCACAGTGCATCA.... 19327_13_0_0_0_0_32 MATURESTAR 45 36.29 13 41.94 32 34.41 22
............................................GCAATGTTTCCACAGTaCATCA.... 24612_0_0_0_0_0_11 MATURESTAR 11 8.87 0 0.00 11 11.83 16A5
............................................GCAATGTTTCCACAGTGCATCAt... 18970_3_0_0_0_0_8 MATURESTAR 11 8.87 3 9.68 8 8.60 22
..............................................AATGTTTCCACAGTGCATCAt... 20287_0_0_0_0_0_8 MATURESTAR 8 6.45 0 0.00 8 8.60 20
............................................GCAATGTTTCCACAGTGCATCAa... 17069_1_0_0_0_0_6 MATURESTAR 7 5.65 1 3.23 6 6.45 22
............................................GCAATGTTTCCACAGTGCAcCA.... 25549_1_0_0_0_0_2 MATURESTAR 3 2.42 1 3.23 2 2.15 19C2
............................................GCAATGTTTCCACAGTGCtTCAt... 32516_2_0_0_0_0_1 MATURESTAR 3 2.42 2 6.45 1 1.08 18T3
............................................GCAATGTTTCCACAGTtCATCA.... 43200_2_0_0_0_0_1 MATURESTAR 3 2.42 2 6.45 1 1.08 16T5
............................................GCAATGTTTCCACAGTGCAaCA.... 9704_1_0_0_0_0_1 MATURESTAR 2 1.61 1 3.23 1 1.08 19A2
............................................GCAATGTTTCCACAGTGtATCA.... 14358_0_0_0_0_0_2 MATURESTAR 2 1.61 0 0.00 2 2.15 17T4
.............................................CAATGTTTCCACAGTGCATCAt... 34849_0_0_0_0_0_2 MATURESTAR 2 1.61 0 0.00 2 2.15 21
...........................................TGCAATGTTTCCACAGTGCATCt.... 26672_0_0_0_0_0_2 MATURESTAR 2 1.61 0 0.00 2 2.15 22
...........................................TGCAATGTTTCCACAGTcCATCA.... 42903_0_0_0_0_0_2 MATURESTAR 2 1.61 0 0.00 2 2.15 17C5
...........................................TGCAATGTTTCCACAGTGCATCAt... 40664_2_0_0_0_0_0 MATURESTAR 2 1.61 2 6.45 0 0.00 23
............................................GCAATGTTTCCACAGTGCAcCAt... 13765_2_0_0_0_0_0 MATURESTAR 2 1.61 2 6.45 0 0.00 19C2
............................................GCAATGTTTCCACAGTGCAaCAa... 22986_0_0_0_0_0_1 MATURESTAR 1 0.81 0 0.00 1 1.08 19A2
............................................GCAATGTTTCCACAGTGCAaCAg... 13484_1_0_0_0_0_0 MATURESTAR 1 0.81 1 3.23 0 0.00 19A2
...........................................TGCAATGTTTCCACAGTGCAaCA.... 30037_0_0_0_0_0_1 MATURESTAR 1 0.81 0 0.00 1 1.08 20A2
............................................GCAATGTTTCCACAGTGCcTCAt... 13923_0_0_0_0_0_1 MATURESTAR 1 0.81 0 0.00 1 1.08 18C3
............................................GCAATGTTTCCACAGTaCATCg.... 7467_0_0_0_0_0_1 MATURESTAR 1 0.81 0 0.00 1 1.08 16A4
............................................GCAATGTTTCCACAGTGCATCt.... 30449_0_0_0_0_0_1 MATURESTAR 1 0.81 0 0.00 1 1.08 21
............................................GCAATGTTTCCACAGTGgATCA.... 4135_1_0_0_0_0_0 MATURESTAR 1 0.81 1 3.23 0 0.00 17G4
.............................................CAATGTTTCCACAGTGCATCAa... 30963_0_0_0_0_0_1 MATURESTAR 1 0.81 0 0.00 1 1.08 21
...........................................TGCAATGTTTCCACAGTGCATCA.... 31480_0_0_0_0_0_1 MATURESTAR 1 0.81 0 0.00 1 1.08 23
...........................................TGCAATGTTTCCACAGTaCATCA.... 28349_0_0_0_0_0_1 MATURESTAR 1 0.81 0 0.00 1 1.08 17A5
............................................GCtATGTTTCCACAGTGCATCA.... 41381_0_0_0_0_0_1 MATURESTAR 1 0.81 0 0.00 1 1.08 2T19
............................................GCAATGTTTCCACAGTcCATCA.... 16962_0_0_0_0_0_1 MATURESTAR 1 0.81 0 0.00 1 1.08 16C5
............................................GCAATGTTTCCACAGTGgATCAt... 11877_0_0_0_0_0_1 MATURESTAR 1 0.81 0 0.00 1 1.08 17G4
............................................GCAATGTTTCCACAGTGCATCAC... 11522_1_0_0_0_0_0 MATURESTAR 1 0.81 1 3.23 0 0.00 23
..............................................AATGTTTCCACAGTGCATCA.... 36029_0_0_0_0_0_1 MATURESTAR 1 0.81 0 0.00 1 1.08 20
............................................GCAATGTTTCCACAGTGCAaCAt... 37000_1_0_0_0_0_0 MATURESTAR 1 0.81 1 3.23 0 0.00 19A2
...........................................TGCAATGTTTCCACAGTGCATCAa... 28481_0_0_0_0_0_1 MATURESTAR 1 0.81 0 0.00 1 1.08 23
...........................................TGCAATGTTTCCACAGTGCAcCAa... 12881_0_0_0_0_0_1 MATURESTAR 1 0.81 0 0.00 1 1.08 20C2
..............................................AATGTTTCCACAGTGCATCAa... 11416_0_0_0_0_0_1 MATURESTAR 1 0.81 0 0.00 1 1.08 20
---------- ---------- ----------
124 31 93
(25.00) (75.00)
((( SUMMARY )))
-CAT- -REST- -ACT- -TOTAL- -TOTAL%-
---------- ---------- ---------- ---------- ----------
MATURE 59 194 253 67.11%
MATURESTAR 31 93 124 32.89%
---------- ---------- ----------
90 287 377
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