[BEGIN]

REFERENCE HAIRPIN
**********************************************************************************************************************
ID                 : mmu-mir-328
DESCRIPTION        : mmu-mir-328 MI0000603 Mus musculus miR-328 stem-loop
CHROMOSOME         : 8
SPAN               : 107832264 - 107832360
LENGTH             : 97
SEQUENCE           : CTGTCTCGGAGCCTGGGGCAGGGGGGCAGGAGGGGCTCAGGGAGAAAGTATCTACAGCCCCTGGCCCTCTCTGCCCTTCCGTCCCCTGTCCCCAAGT
OVERHANG THRESHOLD : 40%
**********************************************************************************************************************


TARGET
******************************
CATEGORY   : MATURE
ID         : mmu-miR-328
ACCID      : MI0000603
PARENT     : mmu-mir-328
CHROMOSOME : 8
START      : 107832264
STOP       : 107832360
OFFSET     : 61..82
SEQUENCE   : CTGGCCCTCTCTGCCCTTCCGT
STRAND     : -
******************************



*** MATURE ***
_________________________________________________________________________________________________
CTGTCTCGGAGCCTGGGGCAGGGGGGCAGGAGGGGCTCAGGGAGAAAGTATCTACAGCCCCTGGCCCTCTCTGCCCTTCCGTCCCCTGTCCCCAAGT REF                  8                    107832264 - 107832360 
                                                            CTGGCCCTCTCTGCCCTTCCGT                MATURE               8                    107832325 - 107832442 mmu-miR-328          -                    
_________________________________________________________________________________________________

                                                                                             -SEQ-              -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
..........................................................CCCTGGCCCTCTCTGCCCTTCCGTt...............   33211_7_0_0_0_0_1       MATURE            8        17.02            7        33.33            1         3.85                        24   
.............................................................TGGCtCTCTCTGCCCTTCCGT................   41624_0_0_0_0_0_6       MATURE            6        12.77            0         0.00            6        23.08                      4T16   
..........................................................CCCTGGCCCTCTCTGCCCTTCCGTa...............   41565_4_0_0_0_0_1       MATURE            5        10.64            4        19.05            1         3.85                        24   
............................................................CTGGCtCTCTCTGCCCTTCCGT................   26575_1_0_0_0_0_1       MATURE            2         4.26            1         4.76            1         3.85                      5T16   
.............................................................TGGCCCTCTCTGCCCaTCCGT................   37730_0_0_0_0_0_2       MATURE            2         4.26            0         0.00            2         7.69                      15A5   
............................................................CTGGCtCTCTCTGCCCTTCCGTa...............   29526_0_0_0_0_0_2       MATURE            2         4.26            0         0.00            2         7.69                      5T16   
.............................................................TGGCCCTCTCTGCCCcTCCGT................   17493_1_0_0_0_0_1       MATURE            2         4.26            1         4.76            1         3.85                      15C5   
............................................................CTGGCtCTCTCTGCCCTTCCGTt...............   24125_1_0_0_0_0_1       MATURE            2         4.26            1         4.76            1         3.85                      5T16   
..........................................................CCCTGGCCCTCTCTGCCCTcCCGTt...............   15296_1_0_0_0_0_0       MATURE            1         2.13            1         4.76            0         0.00                      19C4   
...........................................................CCTGGCCCTCTCTGCCCTaCCGTa...............   16806_0_0_0_0_0_1       MATURE            1         2.13            0         0.00            1         3.85                      18A4   
............................................................CTGGCCCTCTCTGCCCTcCCGT................   39707_0_0_0_0_0_1       MATURE            1         2.13            0         0.00            1         3.85                      17C4   
............................................................CTGGCCCTCTCTGCCCTgCCGT................    1868_0_0_0_0_0_1       MATURE            1         2.13            0         0.00            1         3.85                      17G4   
.........................................................CCCCTGGCCCTCTCTGCCCTTCCGT................   38641_1_0_0_0_0_0       MATURE            1         2.13            1         4.76            0         0.00                        25   
.............................................................TGGCtCTCTCTGCCCTTCCGTa...............   43537_0_0_0_0_0_1       MATURE            1         2.13            0         0.00            1         3.85                      4T16   
.............................................................TGGCtCTCTCTGCCCTTCCGTC...............   16726_0_0_0_0_0_1       MATURE            1         2.13            0         0.00            1         3.85                      4T17   
............................................................CTGGCCCTCTCTGCCCTTgCGT................   29755_1_0_0_0_0_0       MATURE            1         2.13            1         4.76            0         0.00                      18G3   
...........................................................CCTGGCCCTCTCTGCCCTTCCGTt...............    4513_1_0_0_0_0_0       MATURE            1         2.13            1         4.76            0         0.00                        23   
..........................................................CCCTGGCCCTCTCTGCCCTaCCGTt...............    5123_0_0_0_0_0_1       MATURE            1         2.13            0         0.00            1         3.85                      19A4   
............................................................CTGGCCCTCTCTGCCCTTCCGTt...............   25026_0_0_0_0_0_1       MATURE            1         2.13            0         0.00            1         3.85                        22   
............................................................CTGGCCCTCTCTGCCCTaCCGTt...............   16824_1_0_0_0_0_0       MATURE            1         2.13            1         4.76            0         0.00                      17A4   
...........................................................CCTGGCgCTCTCTGCCCTTCCGTCa..............   35880_0_0_0_0_0_1       MATURE            1         2.13            0         0.00            1         3.85                      6G17   
...........................................................CCTGGCCCTCTCTGCCCTTCCGg................   23941_0_0_0_0_0_1       MATURE            1         2.13            0         0.00            1         3.85                        22   
.............................................................TGGCgCTCTCTGCCCTTCCGT................   39714_0_0_0_0_0_1       MATURE            1         2.13            0         0.00            1         3.85                      4G16   
............................................................CTGGCCCTCTCTGCCCTTCCGT................   23300_1_0_0_0_0_0       MATURE            1         2.13            1         4.76            0         0.00                        22   
............................................................CTGGCCCTCTCTGCCCTgCCGTa...............   35385_1_0_0_0_0_0       MATURE            1         2.13            1         4.76            0         0.00                      17G4   
...........................................................CCTGGCCCTCTCTGCCCTTCCGTCC..............   32804_0_0_0_0_0_1       MATURE            1         2.13            0         0.00            1         3.85                        25   
                                                                                                                                      ----------                ----------                ----------   
                                                                                                                                              47                        21                        26                                          
                                                                                                                                                                   (44.68)                   (55.32)                                       




*** OTHER ***
_________________________________________________________________________________________________
CTGTCTCGGAGCCTGGGGCAGGGGGGCAGGAGGGGCTCAGGGAGAAAGTATCTACAGCCCCTGGCCCTCTCTGCCCTTCCGTCCCCTGTCCCCAAGT REF                  8                    107832264 - 107832360 
                                                            CTGGCCCTCTCTGCCCTTCCGT                MATURE               8                    107832325 - 107832442 mmu-miR-328          -                    
_________________________________________________________________________________________________

                                                                                             -SEQ-              -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
.......................................GGGAGAAAGTATCTAtAGCCC......................................   43343_0_0_0_0_0_1        OTHER            1        16.67            0         0.00            1        20.00                      15T5   
........................GGCAGGAGGGGCTCAGGGAaAAAGT.................................................   36940_0_0_0_0_0_1        OTHER            1        16.67            0         0.00            1        20.00                      19A5   
....................GGGGGGCAGGAGGGGCTCAGGGA.......................................................   27686_1_0_0_0_0_0        OTHER            1        16.67            1       100.00            0         0.00                        23   
.........................................GAGAAAGTATCTACAGCCC......................................    1185_0_0_0_0_0_1        OTHER            1        16.67            0         0.00            1        20.00                        19   
.........................GCAGGAGGGGCTCAGGGAGAAAGT.................................................   21645_0_0_0_0_0_1        OTHER            1        16.67            0         0.00            1        20.00                        24   
....................GGGGGGCAGGAGGGGCTCAGGt........................................................   10059_0_0_0_0_0_1        OTHER            1        16.67            0         0.00            1        20.00                        21   
                                                                                                                                      ----------                ----------                ----------   
                                                                                                                                               6                         1                         5                                          
                                                                                                                                                                   (16.67)                   (83.33)                                       




((( SUMMARY )))

          -CAT-          -REST-           -ACT-         -TOTAL-        -TOTAL%-
     ----------      ----------      ----------      ----------      ----------
         MATURE              21              26              47          88.68%
          OTHER               1               5               6          11.32%
                     ----------      ----------      ----------                
                             22              31              53                



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