[BEGIN]
REFERENCE HAIRPIN
**********************************************************************************************************************
ID : mmu-mir-328
DESCRIPTION : mmu-mir-328 MI0000603 Mus musculus miR-328 stem-loop
CHROMOSOME : 8
SPAN : 107832264 - 107832360
LENGTH : 97
SEQUENCE : CTGTCTCGGAGCCTGGGGCAGGGGGGCAGGAGGGGCTCAGGGAGAAAGTATCTACAGCCCCTGGCCCTCTCTGCCCTTCCGTCCCCTGTCCCCAAGT
OVERHANG THRESHOLD : 40%
**********************************************************************************************************************
TARGET
******************************
CATEGORY : MATURE
ID : mmu-miR-328
ACCID : MI0000603
PARENT : mmu-mir-328
CHROMOSOME : 8
START : 107832264
STOP : 107832360
OFFSET : 61..82
SEQUENCE : CTGGCCCTCTCTGCCCTTCCGT
STRAND : -
******************************
*** MATURE ***
_________________________________________________________________________________________________
CTGTCTCGGAGCCTGGGGCAGGGGGGCAGGAGGGGCTCAGGGAGAAAGTATCTACAGCCCCTGGCCCTCTCTGCCCTTCCGTCCCCTGTCCCCAAGT REF 8 107832264 - 107832360
CTGGCCCTCTCTGCCCTTCCGT MATURE 8 107832325 - 107832442 mmu-miR-328 -
_________________________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
..........................................................CCCTGGCCCTCTCTGCCCTTCCGTt............... 33211_7_0_0_0_0_1 MATURE 8 17.02 7 33.33 1 3.85 24
.............................................................TGGCtCTCTCTGCCCTTCCGT................ 41624_0_0_0_0_0_6 MATURE 6 12.77 0 0.00 6 23.08 4T16
..........................................................CCCTGGCCCTCTCTGCCCTTCCGTa............... 41565_4_0_0_0_0_1 MATURE 5 10.64 4 19.05 1 3.85 24
............................................................CTGGCtCTCTCTGCCCTTCCGT................ 26575_1_0_0_0_0_1 MATURE 2 4.26 1 4.76 1 3.85 5T16
.............................................................TGGCCCTCTCTGCCCaTCCGT................ 37730_0_0_0_0_0_2 MATURE 2 4.26 0 0.00 2 7.69 15A5
............................................................CTGGCtCTCTCTGCCCTTCCGTa............... 29526_0_0_0_0_0_2 MATURE 2 4.26 0 0.00 2 7.69 5T16
.............................................................TGGCCCTCTCTGCCCcTCCGT................ 17493_1_0_0_0_0_1 MATURE 2 4.26 1 4.76 1 3.85 15C5
............................................................CTGGCtCTCTCTGCCCTTCCGTt............... 24125_1_0_0_0_0_1 MATURE 2 4.26 1 4.76 1 3.85 5T16
..........................................................CCCTGGCCCTCTCTGCCCTcCCGTt............... 15296_1_0_0_0_0_0 MATURE 1 2.13 1 4.76 0 0.00 19C4
...........................................................CCTGGCCCTCTCTGCCCTaCCGTa............... 16806_0_0_0_0_0_1 MATURE 1 2.13 0 0.00 1 3.85 18A4
............................................................CTGGCCCTCTCTGCCCTcCCGT................ 39707_0_0_0_0_0_1 MATURE 1 2.13 0 0.00 1 3.85 17C4
............................................................CTGGCCCTCTCTGCCCTgCCGT................ 1868_0_0_0_0_0_1 MATURE 1 2.13 0 0.00 1 3.85 17G4
.........................................................CCCCTGGCCCTCTCTGCCCTTCCGT................ 38641_1_0_0_0_0_0 MATURE 1 2.13 1 4.76 0 0.00 25
.............................................................TGGCtCTCTCTGCCCTTCCGTa............... 43537_0_0_0_0_0_1 MATURE 1 2.13 0 0.00 1 3.85 4T16
.............................................................TGGCtCTCTCTGCCCTTCCGTC............... 16726_0_0_0_0_0_1 MATURE 1 2.13 0 0.00 1 3.85 4T17
............................................................CTGGCCCTCTCTGCCCTTgCGT................ 29755_1_0_0_0_0_0 MATURE 1 2.13 1 4.76 0 0.00 18G3
...........................................................CCTGGCCCTCTCTGCCCTTCCGTt............... 4513_1_0_0_0_0_0 MATURE 1 2.13 1 4.76 0 0.00 23
..........................................................CCCTGGCCCTCTCTGCCCTaCCGTt............... 5123_0_0_0_0_0_1 MATURE 1 2.13 0 0.00 1 3.85 19A4
............................................................CTGGCCCTCTCTGCCCTTCCGTt............... 25026_0_0_0_0_0_1 MATURE 1 2.13 0 0.00 1 3.85 22
............................................................CTGGCCCTCTCTGCCCTaCCGTt............... 16824_1_0_0_0_0_0 MATURE 1 2.13 1 4.76 0 0.00 17A4
...........................................................CCTGGCgCTCTCTGCCCTTCCGTCa.............. 35880_0_0_0_0_0_1 MATURE 1 2.13 0 0.00 1 3.85 6G17
...........................................................CCTGGCCCTCTCTGCCCTTCCGg................ 23941_0_0_0_0_0_1 MATURE 1 2.13 0 0.00 1 3.85 22
.............................................................TGGCgCTCTCTGCCCTTCCGT................ 39714_0_0_0_0_0_1 MATURE 1 2.13 0 0.00 1 3.85 4G16
............................................................CTGGCCCTCTCTGCCCTTCCGT................ 23300_1_0_0_0_0_0 MATURE 1 2.13 1 4.76 0 0.00 22
............................................................CTGGCCCTCTCTGCCCTgCCGTa............... 35385_1_0_0_0_0_0 MATURE 1 2.13 1 4.76 0 0.00 17G4
...........................................................CCTGGCCCTCTCTGCCCTTCCGTCC.............. 32804_0_0_0_0_0_1 MATURE 1 2.13 0 0.00 1 3.85 25
---------- ---------- ----------
47 21 26
(44.68) (55.32)
*** OTHER ***
_________________________________________________________________________________________________
CTGTCTCGGAGCCTGGGGCAGGGGGGCAGGAGGGGCTCAGGGAGAAAGTATCTACAGCCCCTGGCCCTCTCTGCCCTTCCGTCCCCTGTCCCCAAGT REF 8 107832264 - 107832360
CTGGCCCTCTCTGCCCTTCCGT MATURE 8 107832325 - 107832442 mmu-miR-328 -
_________________________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
.......................................GGGAGAAAGTATCTAtAGCCC...................................... 43343_0_0_0_0_0_1 OTHER 1 16.67 0 0.00 1 20.00 15T5
........................GGCAGGAGGGGCTCAGGGAaAAAGT................................................. 36940_0_0_0_0_0_1 OTHER 1 16.67 0 0.00 1 20.00 19A5
....................GGGGGGCAGGAGGGGCTCAGGGA....................................................... 27686_1_0_0_0_0_0 OTHER 1 16.67 1 100.00 0 0.00 23
.........................................GAGAAAGTATCTACAGCCC...................................... 1185_0_0_0_0_0_1 OTHER 1 16.67 0 0.00 1 20.00 19
.........................GCAGGAGGGGCTCAGGGAGAAAGT................................................. 21645_0_0_0_0_0_1 OTHER 1 16.67 0 0.00 1 20.00 24
....................GGGGGGCAGGAGGGGCTCAGGt........................................................ 10059_0_0_0_0_0_1 OTHER 1 16.67 0 0.00 1 20.00 21
---------- ---------- ----------
6 1 5
(16.67) (83.33)
((( SUMMARY )))
-CAT- -REST- -ACT- -TOTAL- -TOTAL%-
---------- ---------- ---------- ---------- ----------
MATURE 21 26 47 88.68%
OTHER 1 5 6 11.32%
---------- ---------- ----------
22 31 53
[END]