[BEGIN]

REFERENCE HAIRPIN
********************************************************************************************************************
ID                 : mmu-mir-322
DESCRIPTION        : mmu-mir-322 MI0000590 Mus musculus miR-322 stem-loop
CHROMOSOME         : X
SPAN               : 50407432 - 50407526
LENGTH             : 95
SEQUENCE           : CCTCGTTGACTCCGAAGGGCTGCAGCAGCAATTCATGTTTTGGAGTATTGCCAAGGTTCAAAACATGAAGCGCTGCAACACCCCTTCGTGGGGAA
OVERHANG THRESHOLD : 40%
********************************************************************************************************************


TARGET
******************************
CATEGORY   : MATURE
ID         : mmu-miR-322
ACCID      : MI0000590
PARENT     : mmu-mir-322
CHROMOSOME : X
START      : 50407432
STOP       : 50407526
OFFSET     : 23..44
SEQUENCE   : CAGCAGCAATTCATGTTTTGGA
STRAND     : -
******************************


TARGET
******************************
CATEGORY   : MATURESTAR
ID         : mmu-miR-322*
ACCID      : MI0000590
PARENT     : mmu-mir-322
CHROMOSOME : X
START      : 50407432
STOP       : 50407526
OFFSET     : 61..81
SEQUENCE   : AAACATGAAGCGCTGCAACAC
STRAND     : -
******************************



*** MATURE ***
_______________________________________________________________________________________________
CCTCGTTGACTCCGAAGGGCTGCAGCAGCAATTCATGTTTTGGAGTATTGCCAAGGTTCAAAACATGAAGCGCTGCAACACCCCTTCGTGGGGAA REF                  X                    50407432 - 50407526  
                      CAGCAGCAATTCATGTTTTGGA                                                    MATURE               X                    50407455 - 50407570  mmu-miR-322          -                    
                                                            AAACATGAAGCGCTGCAACAC               MATURESTAR           X                    50407493 - 50407607  mmu-miR-322*         -                    
_______________________________________________________________________________________________

                                                                                           -SEQ-              -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
....................TGCAGCAGCAATTCATGTaTTGGA....................................................   38194_2_0_0_0_0_6       MATURE            8        10.81            2         6.25            6        14.29                      18A5   
.....................GCAGCAGCAATTCATGTTTaGG.....................................................   37561_2_0_0_0_0_3       MATURE            5         6.76            2         6.25            3         7.14                      19A2   
....................TGCAGCAGCAATTCATGTTTTGGA....................................................    1804_3_0_0_0_0_1       MATURE            4         5.41            3         9.38            1         2.38                        24   
.....................GCAGCAGCAATTCATGTTTTGa.....................................................   34260_1_0_0_0_0_2       MATURE            3         4.05            1         3.12            2         4.76                        21   
....................TGCAGCAGCAATTCATGaTTTGG.....................................................   12615_2_0_0_0_0_1       MATURE            3         4.05            2         6.25            1         2.38                      17A5   
.....................GCAGCAGCAATTCATGTTTTaGA....................................................   31481_2_0_0_0_0_1       MATURE            3         4.05            2         6.25            1         2.38                      20A2   
.....................GCAGCAGCAATTCATGTTTTGG.....................................................   14159_2_0_0_0_0_1       MATURE            3         4.05            2         6.25            1         2.38                        22   
....................TGCAGCAGCAATTCATGTTTTGt.....................................................    1774_0_0_0_0_0_2       MATURE            2         2.70            0         0.00            2         4.76                        22   
......................CAGCAGCAATTCATGTTTTGGA....................................................   23415_1_0_0_0_0_1       MATURE            2         2.70            1         3.12            1         2.38                        22   
.....................GCAGCAGCAATTCATGTTaTGGA....................................................   16341_2_0_0_0_0_0       MATURE            2         2.70            2         6.25            0         0.00                      18A4   
.....................GCAGCAGCAATTCATGTTTTGt.....................................................    9863_2_0_0_0_0_0       MATURE            2         2.70            2         6.25            0         0.00                        21   
.................GGCgGCAGCAGCAATTCATGTTTTG......................................................    4845_0_0_0_0_0_2       MATURE            2         2.70            0         0.00            2         4.76                      3G21   
....................TGCAGCAGCAATTCATGTTcTGGA....................................................   34952_1_0_0_0_0_1       MATURE            2         2.70            1         3.12            1         2.38                      19C4   
.....................GCAGCAGCAATTCATGTaTTG......................................................   32724_1_0_0_0_0_1       MATURE            2         2.70            1         3.12            1         2.38                      17A3   
.....................GCAGCAGCAATTCATGTTTTG......................................................   33812_0_0_0_0_0_2       MATURE            2         2.70            0         0.00            2         4.76                        21   
.....................GCAGCAGCAATTCATGTaTTGG.....................................................   24339_0_0_0_0_0_2       MATURE            2         2.70            0         0.00            2         4.76                      17A4   
.....................GCAGCAGCAATTCATGTTTTGGA....................................................   21315_0_0_0_0_0_2       MATURE            2         2.70            0         0.00            2         4.76                        23   
....................TGCAGCAGCAATTCATGTcTTGGA....................................................   23465_0_0_0_0_0_2       MATURE            2         2.70            0         0.00            2         4.76                      18C5   
.....................GCAGCAGCAATTCATGcTTTGa.....................................................   41405_0_0_0_0_0_1       MATURE            1         1.35            0         0.00            1         2.38                      16C4   
.....................GCAGCAGCAATTCATGTTaTGt.....................................................   11392_1_0_0_0_0_0       MATURE            1         1.35            1         3.12            0         0.00                      18A2   
......................CAGCAGCAATTCATGTTTTtGA....................................................    4463_1_0_0_0_0_0       MATURE            1         1.35            1         3.12            0         0.00                      19T2   
.....................GCAGCAGCAATTCATGTcTTGGt....................................................   30109_0_0_0_0_0_1       MATURE            1         1.35            0         0.00            1         2.38                      17C4   
......................CAGCAGCAATTCATGTTTTGGg....................................................   31159_0_0_0_0_0_1       MATURE            1         1.35            0         0.00            1         2.38                        21   
.....................GCAGCAGCAATTCATGTTTTcGA....................................................    2731_1_0_0_0_0_0       MATURE            1         1.35            1         3.12            0         0.00                      20C2   
......................CAGCAGCAATTCATGTTcTGGA....................................................    6382_1_0_0_0_0_0       MATURE            1         1.35            1         3.12            0         0.00                      17C4   
.....................GCAGCAGCAATTCATGTaTTGGA....................................................    6967_0_0_0_0_0_1       MATURE            1         1.35            0         0.00            1         2.38                      17A5   
.......................AGCAGCAATTCATGTTTTGGtGTA.................................................   10724_1_0_0_0_0_0       MATURE            1         1.35            1         3.12            0         0.00                      20T3   
....................TGCAGCAGCAATTCATGTTaTGG.....................................................   23266_0_0_0_0_0_1       MATURE            1         1.35            0         0.00            1         2.38                      19A3   
.......................AGCAGCAATTCATGTaTTGGA....................................................   32367_1_0_0_0_0_0       MATURE            1         1.35            1         3.12            0         0.00                      15A5   
....................TGCAGCAGCAATTCATGTgTTGGA....................................................   32415_1_0_0_0_0_0       MATURE            1         1.35            1         3.12            0         0.00                      18G5   
.....................GCAGCAGCAATTCATGTTTaGGA....................................................   17804_0_0_0_0_0_1       MATURE            1         1.35            0         0.00            1         2.38                      19A3   
.....................GCAGCAGCAATTCATGTTcTGG.....................................................   32351_0_0_0_0_0_1       MATURE            1         1.35            0         0.00            1         2.38                      18C3   
.....................GCAGCAGCAATTCATGTcTTGGA....................................................   32363_0_0_0_0_0_1       MATURE            1         1.35            0         0.00            1         2.38                      17C5   
.....................GCAGCAGCAATTCATGTTTcGGA....................................................   32736_1_0_0_0_0_0       MATURE            1         1.35            1         3.12            0         0.00                      19C3   
....................TGCAGCAGCAATTCATGTTgTGGA....................................................   27548_0_0_0_0_0_1       MATURE            1         1.35            0         0.00            1         2.38                      19G4   
.....................GCAGCAGCAATTCATGTTTTGcAGc..................................................   24616_1_0_0_0_0_0       MATURE            1         1.35            1         3.12            0         0.00                      21C2   
....................TGCAGCAGCAATTCATGTTTTGG.....................................................   11934_0_0_0_0_0_1       MATURE            1         1.35            0         0.00            1         2.38                        23   
.....................GCAGCAGCAATTCATGTTaTGG.....................................................   21191_0_0_0_0_0_1       MATURE            1         1.35            0         0.00            1         2.38                      18A3   
.....................GCAGCAGCAATTCATGTTaTGa.....................................................   18944_1_0_0_0_0_0       MATURE            1         1.35            1         3.12            0         0.00                      18A2   
......................CAGCAGCAATTCATGTTTaGGA....................................................   36420_1_0_0_0_0_0       MATURE            1         1.35            1         3.12            0         0.00                      18A3   
.....................GCAGCAGCAATTCATGTcTTGG.....................................................   37739_0_0_0_0_0_1       MATURE            1         1.35            0         0.00            1         2.38                      17C4   
                                                                                                                                    ----------                ----------                ----------   
                                                                                                                                            74                        32                        42                                          
                                                                                                                                                                 (43.24)                   (56.76)                                       




*** MATURESTAR ***
_______________________________________________________________________________________________
CCTCGTTGACTCCGAAGGGCTGCAGCAGCAATTCATGTTTTGGAGTATTGCCAAGGTTCAAAACATGAAGCGCTGCAACACCCCTTCGTGGGGAA REF                  X                    50407432 - 50407526  
                      CAGCAGCAATTCATGTTTTGGA                                                    MATURE               X                    50407455 - 50407570  mmu-miR-322          -                    
                                                            AAACATGAAGCGCTGCAACAC               MATURESTAR           X                    50407493 - 50407607  mmu-miR-322*         -                    
_______________________________________________________________________________________________

                                                                                           -SEQ-              -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
............................................................AAACATGAAGCGCTGCAACACt..............   38922_6_0_0_0_0_6   MATURESTAR           12        17.65            6        17.65            6        17.65                        21   
............................................................AAACATGAAGCGCTGCAACAC...............   44153_6_0_0_0_0_1   MATURESTAR            7        10.29            6        17.65            1         2.94                        21   
..........................................................CAAAACATGAAGCGCTGCAACA................   26813_0_0_0_0_0_5   MATURESTAR            5         7.35            0         0.00            5        14.71                        22   
...........................................................AAAACATGAAGCGCTGCAACA................   34985_3_0_0_0_0_2   MATURESTAR            5         7.35            3         8.82            2         5.88                        21   
............................................................AAACATGAAGCGCTGCAACACC..............   35337_1_0_0_0_0_2   MATURESTAR            3         4.41            1         2.94            2         5.88                        22   
............................................................AAACATGAAGCGCTGCAACACg..............   18859_2_0_0_0_0_1   MATURESTAR            3         4.41            2         5.88            1         2.94                        21   
............................................................AAACATGAAGCGCTGCAACAa...............   16494_1_0_0_0_0_1   MATURESTAR            2         2.94            1         2.94            1         2.94                        20   
.........................................................TCAAAACATGAAGCGCTGCAACA................   15456_1_0_0_0_0_1   MATURESTAR            2         2.94            1         2.94            1         2.94                        23   
..............................................................ACATGAAGCGCTGCAACAC...............   33697_2_0_0_0_0_0   MATURESTAR            2         2.94            2         5.88            0         0.00                        19   
............................................................AAACATGAAGCGCTGCgACACt..............   25952_2_0_0_0_0_0   MATURESTAR            2         2.94            2         5.88            0         0.00                      16G4   
............................................................AAACATGAAGCGCTGCAACcCC..............   41834_1_0_0_0_0_1   MATURESTAR            2         2.94            1         2.94            1         2.94                      19C2   
...........................................................AAAACATGAAGCGCTGCAACAa...............   12961_1_0_0_0_0_1   MATURESTAR            2         2.94            1         2.94            1         2.94                        21   
...........................................................AAAACATGAAGCGCTGCAACAC...............   17619_0_0_0_0_0_2   MATURESTAR            2         2.94            0         0.00            2         5.88                        22   
..........................................................CAAAACATGAAGCGCTGCAACAt...............   34481_1_0_0_0_0_0   MATURESTAR            1         1.47            1         2.94            0         0.00                        22   
...........................................................AAAACATGAAGCGCTcCAACA................   30364_0_0_0_0_0_1   MATURESTAR            1         1.47            0         0.00            1         2.94                      15C5   
..........................................................CAAAACATGAAGCGCTcCAAC.................   21149_1_0_0_0_0_0   MATURESTAR            1         1.47            1         2.94            0         0.00                      16C4   
............................................................AAACATGAAGCGCTGCtACACa..............   29846_0_0_0_0_0_1   MATURESTAR            1         1.47            0         0.00            1         2.94                      16T4   
............................................................AAACATGAAGCGCTGCAAgACt..............   14972_0_0_0_0_0_1   MATURESTAR            1         1.47            0         0.00            1         2.94                      18G2   
..........................................................CAAAACATGAAGCGCTGCAAC.................   15506_0_0_0_0_0_1   MATURESTAR            1         1.47            0         0.00            1         2.94                        21   
........................................................TTCAAAACATGAAGCGCTGCAACAt...............   16132_1_0_0_0_0_0   MATURESTAR            1         1.47            1         2.94            0         0.00                        24   
...........................................................AAAACATGAAGCGCTGCAACAt...............   37146_0_0_0_0_0_1   MATURESTAR            1         1.47            0         0.00            1         2.94                        21   
............................................................AAACATGAAGCGCTGCcACAC...............   31463_1_0_0_0_0_0   MATURESTAR            1         1.47            1         2.94            0         0.00                      16C4   
...........................................................AAAACATGAAGCGCTGaAACA................   40252_0_0_0_0_0_1   MATURESTAR            1         1.47            0         0.00            1         2.94                      16A4   
..........................................................CAAAACATGAAGCGCTGCcAC.................   42460_0_0_0_0_0_1   MATURESTAR            1         1.47            0         0.00            1         2.94                      18C2   
..........................................................CAAAACATGAAGCGCTGCtAC.................   17163_0_0_0_0_0_1   MATURESTAR            1         1.47            0         0.00            1         2.94                      18T2   
..............................................................ACATGAAGCGCTGCAACACt..............   15180_1_0_0_0_0_0   MATURESTAR            1         1.47            1         2.94            0         0.00                        19   
............................................................AAACATGAAGCGCTGCAACAt...............   39450_0_0_0_0_0_1   MATURESTAR            1         1.47            0         0.00            1         2.94                        20   
...........................................................AAAACATGAAGCGCTGCAA..................   34926_1_0_0_0_0_0   MATURESTAR            1         1.47            1         2.94            0         0.00                        19   
..........................................................CAAAACATGAAGCGCTGCAACAC...............   42296_0_0_0_0_0_1   MATURESTAR            1         1.47            0         0.00            1         2.94                        23   
............................................................AAACATGAAGCGCTGCtACACt..............   34027_1_0_0_0_0_0   MATURESTAR            1         1.47            1         2.94            0         0.00                      16T4   
...........................................................AAAACATGAAGCGCTGaAACAC...............   41719_0_0_0_0_0_1   MATURESTAR            1         1.47            0         0.00            1         2.94                      16A5   
............................................................AAACATGAAGCGCTGCAcCACC..............   40864_1_0_0_0_0_0   MATURESTAR            1         1.47            1         2.94            0         0.00                      17C4   
                                                                                                                                    ----------                ----------                ----------   
                                                                                                                                            68                        34                        34                                          
                                                                                                                                                                 (50.00)                   (50.00)                                       




*** OTHER ***
_______________________________________________________________________________________________
CCTCGTTGACTCCGAAGGGCTGCAGCAGCAATTCATGTTTTGGAGTATTGCCAAGGTTCAAAACATGAAGCGCTGCAACACCCCTTCGTGGGGAA REF                  X                    50407432 - 50407526  
                      CAGCAGCAATTCATGTTTTGGA                                                    MATURE               X                    50407455 - 50407570  mmu-miR-322          -                    
                                                            AAACATGAAGCGCTGCAACAC               MATURESTAR           X                    50407493 - 50407607  mmu-miR-322*         -                    
_______________________________________________________________________________________________

                                                                                           -SEQ-             -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
...................................TGTTTTGGAGTATgGCCAAGGTg......................................   3839_0_0_0_0_0_1        OTHER            1       100.00            0            0            1       100.00                      13G8   
                                                                                                                                   ----------                ----------                ----------   
                                                                                                                                            1                         0                         1                                          
                                                                                                                                                                 (0.00)                  (100.00)                                       




((( SUMMARY )))

          -CAT-          -REST-           -ACT-         -TOTAL-        -TOTAL%-
     ----------      ----------      ----------      ----------      ----------
         MATURE              32              42              74          51.75%
     MATURESTAR              34              34              68          47.55%
          OTHER               0               1               1           0.70%
                     ----------      ----------      ----------                
                             66              77             143                



[END]
