[BEGIN]

REFERENCE HAIRPIN
*******************************************************************************************************************************
ID                 : mmu-mir-31
DESCRIPTION        : mmu-mir-31 MI0000579 Mus musculus miR-31 stem-loop
CHROMOSOME         : 4
SPAN               : 88556461 - 88556566
LENGTH             : 106
SEQUENCE           : TGCTCCTGTAACTCGGAACTGGAGAGGAGGCAAGATGCTGGCATAGCTGTTGAACTGAGAACCTGCTATGCCAACATATTGCCATCTTTCCTGTCTGACAGCAGCT
OVERHANG THRESHOLD : 40%
*******************************************************************************************************************************


TARGET
******************************
CATEGORY   : MATURE
ID         : mmu-miR-31
ACCID      : MI0000579
PARENT     : mmu-mir-31
CHROMOSOME : 4
START      : 88556461
STOP       : 88556566
OFFSET     : 28..49
SEQUENCE   : AGGCAAGATGCTGGCATAGCTG
STRAND     : -
******************************


TARGET
******************************
CATEGORY   : MATURESTAR
ID         : mmu-miR-31*
ACCID      : MI0000579
PARENT     : mmu-mir-31
CHROMOSOME : 4
START      : 88556461
STOP       : 88556566
OFFSET     : 64..86
SEQUENCE   : TGCTATGCCAACATATTGCCATC
STRAND     : -
******************************



*** MATURE ***
__________________________________________________________________________________________________________
TGCTCCTGTAACTCGGAACTGGAGAGGAGGCAAGATGCTGGCATAGCTGTTGAACTGAGAACCTGCTATGCCAACATATTGCCATCTTTCCTGTCTGACAGCAGCT REF                  4                    88556461 - 88556566  
                           AGGCAAGATGCTGGCATAGCTG                                                          MATURE               4                    88556489 - 88556615  mmu-miR-31           -                    
                                                               TGCTATGCCAACATATTGCCATC                     MATURESTAR           4                    88556525 - 88556652  mmu-miR-31*          -                    
__________________________________________________________________________________________________________

                                                                                                      -SEQ-              -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
..........................GAGGCAAGATGCTGGCATAGCTG..........................................................   43990_1_0_0_0_0_0       MATURE            1        12.50            1        25.00            0         0.00                        23   
.........................GGAGGCAAGATGCTGGCATAGCTGT.........................................................   24938_0_0_0_0_0_1       MATURE            1        12.50            0         0.00            1        25.00                        25   
..........................GAGGCAAGATGCTGGCATAGCTGT.........................................................   18825_0_0_0_0_0_1       MATURE            1        12.50            0         0.00            1        25.00                        24   
.........................GGAGGCAAGATGCTGGCATAaCTGa.........................................................   16623_1_0_0_0_0_0       MATURE            1        12.50            1        25.00            0         0.00                      20A3   
..........................GAGGCAAGATGCTGGCATAGCgGT.........................................................   42902_1_0_0_0_0_0       MATURE            1        12.50            1        25.00            0         0.00                      21G2   
..........................GAGGCAAGATGCTGGCATAGCT...........................................................    1514_0_0_0_0_0_1       MATURE            1        12.50            0         0.00            1        25.00                        22   
..........................GAGGCAAGATGCTGGCATtGCTG..........................................................    1500_0_0_0_0_0_1       MATURE            1        12.50            0         0.00            1        25.00                      18T4   
..........................GAGGCAAGATGCTGGCATAGaTGTa........................................................   36220_1_0_0_0_0_0       MATURE            1        12.50            1        25.00            0         0.00                      20A3   
                                                                                                                                               ----------                ----------                ----------   
                                                                                                                                                        8                         4                         4                                          
                                                                                                                                                                            (50.00)                   (50.00)                                       




*** MATURESTAR ***
__________________________________________________________________________________________________________
TGCTCCTGTAACTCGGAACTGGAGAGGAGGCAAGATGCTGGCATAGCTGTTGAACTGAGAACCTGCTATGCCAACATATTGCCATCTTTCCTGTCTGACAGCAGCT REF                  4                    88556461 - 88556566  
                           AGGCAAGATGCTGGCATAGCTG                                                          MATURE               4                    88556489 - 88556615  mmu-miR-31           -                    
                                                               TGCTATGCCAACATATTGCCATC                     MATURESTAR           4                    88556525 - 88556652  mmu-miR-31*          -                    
__________________________________________________________________________________________________________

                                                                                                      -SEQ-              -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
...............................................................TGCTATGCCAACATATgGCCAc......................   32819_1_0_0_0_0_0   MATURESTAR            1       100.00            1       100.00            0            0                      16G4   
                                                                                                                                               ----------                ----------                ----------   
                                                                                                                                                        1                         1                         0                                          
                                                                                                                                                                           (100.00)                    (0.00)                                       




((( SUMMARY )))

          -CAT-          -REST-           -ACT-         -TOTAL-        -TOTAL%-
     ----------      ----------      ----------      ----------      ----------
         MATURE               4               4               8          88.89%
     MATURESTAR               1               0               1          11.11%
                     ----------      ----------      ----------                
                              5               4               9                



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