[BEGIN]
REFERENCE HAIRPIN
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ID : mmu-mir-31
DESCRIPTION : mmu-mir-31 MI0000579 Mus musculus miR-31 stem-loop
CHROMOSOME : 4
SPAN : 88556461 - 88556566
LENGTH : 106
SEQUENCE : TGCTCCTGTAACTCGGAACTGGAGAGGAGGCAAGATGCTGGCATAGCTGTTGAACTGAGAACCTGCTATGCCAACATATTGCCATCTTTCCTGTCTGACAGCAGCT
OVERHANG THRESHOLD : 40%
*******************************************************************************************************************************
TARGET
******************************
CATEGORY : MATURE
ID : mmu-miR-31
ACCID : MI0000579
PARENT : mmu-mir-31
CHROMOSOME : 4
START : 88556461
STOP : 88556566
OFFSET : 28..49
SEQUENCE : AGGCAAGATGCTGGCATAGCTG
STRAND : -
******************************
TARGET
******************************
CATEGORY : MATURESTAR
ID : mmu-miR-31*
ACCID : MI0000579
PARENT : mmu-mir-31
CHROMOSOME : 4
START : 88556461
STOP : 88556566
OFFSET : 64..86
SEQUENCE : TGCTATGCCAACATATTGCCATC
STRAND : -
******************************
*** MATURE ***
__________________________________________________________________________________________________________
TGCTCCTGTAACTCGGAACTGGAGAGGAGGCAAGATGCTGGCATAGCTGTTGAACTGAGAACCTGCTATGCCAACATATTGCCATCTTTCCTGTCTGACAGCAGCT REF 4 88556461 - 88556566
AGGCAAGATGCTGGCATAGCTG MATURE 4 88556489 - 88556615 mmu-miR-31 -
TGCTATGCCAACATATTGCCATC MATURESTAR 4 88556525 - 88556652 mmu-miR-31* -
__________________________________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
..........................GAGGCAAGATGCTGGCATAGCTG.......................................................... 43990_1_0_0_0_0_0 MATURE 1 12.50 1 25.00 0 0.00 23
.........................GGAGGCAAGATGCTGGCATAGCTGT......................................................... 24938_0_0_0_0_0_1 MATURE 1 12.50 0 0.00 1 25.00 25
..........................GAGGCAAGATGCTGGCATAGCTGT......................................................... 18825_0_0_0_0_0_1 MATURE 1 12.50 0 0.00 1 25.00 24
.........................GGAGGCAAGATGCTGGCATAaCTGa......................................................... 16623_1_0_0_0_0_0 MATURE 1 12.50 1 25.00 0 0.00 20A3
..........................GAGGCAAGATGCTGGCATAGCgGT......................................................... 42902_1_0_0_0_0_0 MATURE 1 12.50 1 25.00 0 0.00 21G2
..........................GAGGCAAGATGCTGGCATAGCT........................................................... 1514_0_0_0_0_0_1 MATURE 1 12.50 0 0.00 1 25.00 22
..........................GAGGCAAGATGCTGGCATtGCTG.......................................................... 1500_0_0_0_0_0_1 MATURE 1 12.50 0 0.00 1 25.00 18T4
..........................GAGGCAAGATGCTGGCATAGaTGTa........................................................ 36220_1_0_0_0_0_0 MATURE 1 12.50 1 25.00 0 0.00 20A3
---------- ---------- ----------
8 4 4
(50.00) (50.00)
*** MATURESTAR ***
__________________________________________________________________________________________________________
TGCTCCTGTAACTCGGAACTGGAGAGGAGGCAAGATGCTGGCATAGCTGTTGAACTGAGAACCTGCTATGCCAACATATTGCCATCTTTCCTGTCTGACAGCAGCT REF 4 88556461 - 88556566
AGGCAAGATGCTGGCATAGCTG MATURE 4 88556489 - 88556615 mmu-miR-31 -
TGCTATGCCAACATATTGCCATC MATURESTAR 4 88556525 - 88556652 mmu-miR-31* -
__________________________________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
...............................................................TGCTATGCCAACATATgGCCAc...................... 32819_1_0_0_0_0_0 MATURESTAR 1 100.00 1 100.00 0 0 16G4
---------- ---------- ----------
1 1 0
(100.00) (0.00)
((( SUMMARY )))
-CAT- -REST- -ACT- -TOTAL- -TOTAL%-
---------- ---------- ---------- ---------- ----------
MATURE 4 4 8 88.89%
MATURESTAR 1 0 1 11.11%
---------- ---------- ----------
5 4 9
[END]