[BEGIN]
REFERENCE HAIRPIN
********************************************************************************************
ID : mmu-mir-30a
DESCRIPTION : mmu-mir-30a MI0000144 Mus musculus miR-30a stem-loop
CHROMOSOME : 1
SPAN : 23279108 - 23279178
LENGTH : 71
SEQUENCE : GCGACTGTAAACATCCTCGACTGGAAGCTGTGAAGCCACAAATGGGCTTTCAGTCGGATGTTTGCAGCTGC
OVERHANG THRESHOLD : 40%
********************************************************************************************
TARGET
******************************
CATEGORY : MATURE
ID : mmu-miR-30a
ACCID : MI0000144
PARENT : mmu-mir-30a
CHROMOSOME : 1
START : 23279108
STOP : 23279178
OFFSET : 6..27
SEQUENCE : TGTAAACATCCTCGACTGGAAG
STRAND : +
******************************
TARGET
******************************
CATEGORY : MATURESTAR
ID : mmu-miR-30a*
ACCID : MI0000144
PARENT : mmu-mir-30a
CHROMOSOME : 1
START : 23279108
STOP : 23279178
OFFSET : 47..68
SEQUENCE : CTTTCAGTCGGATGTTTGCAGC
STRAND : +
******************************
*** MATURE ***
_______________________________________________________________________
GCGACTGTAAACATCCTCGACTGGAAGCTGTGAAGCCACAAATGGGCTTTCAGTCGGATGTTTGCAGCTGC REF 1 23279108 - 23279178
TGTAAACATCCTCGACTGGAAG MATURE 1 23279114 - 23279205 mmu-miR-30a +
CTTTCAGTCGGATGTTTGCAGC MATURESTAR 1 23279155 - 23279246 mmu-miR-30a* +
_______________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
.....TGTAAACATCCTCGACTGGAAG............................................. 41306_36_0_0_0_0_53 MATURE 89 9.57 36 9.35 53 9.72 22
.....TGTAAACATCCTCGACTGGAAGCT........................................... 15317_14_0_0_0_0_71 MATURE 85 9.14 14 3.64 71 13.03 24
......GTAAACATCCTCGACTGGAAGCT........................................... 22805_45_0_0_0_0_31 MATURE 76 8.17 45 11.69 31 5.69 23
.....TGTAAACATCCTCGACTGGAAaCT........................................... 25381_32_0_0_0_0_40 MATURE 72 7.74 32 8.31 40 7.34 21A2
.....TGTAAACATCCTCGACTGGAAGC............................................ 33317_11_0_0_0_0_29 MATURE 40 4.30 11 2.86 29 5.32 23
.....TGTAAACATCCTCGACTGaAAGC............................................ 34437_9_0_0_0_0_27 MATURE 36 3.87 9 2.34 27 4.95 18A4
.....TGTAAACATCCTCGACTGaAAGCT........................................... 42616_15_0_0_0_0_14 MATURE 29 3.12 15 3.90 14 2.57 18A5
.....TGTAAACATCCTCGACTGGAAa............................................. 42653_8_0_0_0_0_20 MATURE 28 3.01 8 2.08 20 3.67 21
.....TGTAAACATCCTCGACTGGAA.............................................. 38368_10_0_0_0_0_14 MATURE 24 2.58 10 2.60 14 2.57 21
.....TGTAAACATCCTCGACTaGAAGC............................................ 29302_5_0_0_0_0_18 MATURE 23 2.47 5 1.30 18 3.30 17A5
......GTAAACATCCTCGACTGGAAGC............................................ 41375_15_0_0_0_0_8 MATURE 23 2.47 15 3.90 8 1.47 22
.....TGTAAACATCCTCGACTcGAAGC............................................ 31070_7_0_0_0_0_14 MATURE 21 2.26 7 1.82 14 2.57 17C5
.....TGTAAACATCCTCGACaGGAAG............................................. 30869_11_0_0_0_0_8 MATURE 19 2.04 11 2.86 8 1.47 16A5
.....TGTAAACATCCTCGACTGGAAGCTt.......................................... 496_9_0_0_0_0_9 MATURE 18 1.94 9 2.34 9 1.65 24
......GTAAACATCCTCGACTGGAAaCT........................................... 32477_12_0_0_0_0_5 MATURE 17 1.83 12 3.12 5 0.92 20A2
.....TGTAAACATCCTCGACTaGAAG............................................. 30054_5_0_0_0_0_11 MATURE 16 1.72 5 1.30 11 2.02 17A4
.....TGTAAACATCCTCGACTGGAAGCa........................................... 39375_2_0_0_0_0_13 MATURE 15 1.61 2 0.52 13 2.39 23
.....TGTAAACATCCTCGACTGaAAG............................................. 27321_2_0_0_0_0_13 MATURE 15 1.61 2 0.52 13 2.39 18A3
......GTAAACATCCTCGACTGGAAGCa........................................... 34457_8_0_0_0_0_6 MATURE 14 1.51 8 2.08 6 1.10 22
......GTAAACATCCTCGACTGaAAGCT........................................... 42493_8_0_0_0_0_5 MATURE 13 1.40 8 2.08 5 0.92 17A5
......GTAAACATCCTCGACTGaAAGC............................................ 35570_11_0_0_0_0_2 MATURE 13 1.40 11 2.86 2 0.37 17A4
.....TGTAAACATCCTCGACTGaAA.............................................. 41966_2_0_0_0_0_10 MATURE 12 1.29 2 0.52 10 1.83 18A2
.....TGTAAACATCCTCGACgGGAAG............................................. 40257_4_0_0_0_0_6 MATURE 10 1.08 4 1.04 6 1.10 16G5
.....TGTAAACATCCTCGACTGaAAa............................................. 32272_3_0_0_0_0_5 MATURE 8 0.86 3 0.78 5 0.92 18A2
.....TGTAAACATCCTCGACTGcAAGCT........................................... 21845_1_0_0_0_0_7 MATURE 8 0.86 1 0.26 7 1.28 18C5
.....TGTAAACATCCTCGACTGGAAcCT........................................... 43605_3_0_0_0_0_4 MATURE 7 0.75 3 0.78 4 0.73 21C2
.....TGTAAACATCCTCGACTGGAAt............................................. 38645_2_0_0_0_0_5 MATURE 7 0.75 2 0.52 5 0.92 21
......GTAAACATCCTCGACTGGAAGa............................................ 33884_4_0_0_0_0_3 MATURE 7 0.75 4 1.04 3 0.55 21
......GTAAACATCCTCGACTGGAAGCc........................................... 30661_6_0_0_0_0_0 MATURE 6 0.65 6 1.56 0 0.00 22
.....TGTAAACATCCTCGACTGtAAGCT........................................... 66_1_0_0_0_0_5 MATURE 6 0.65 1 0.26 5 0.92 18T5
.....TGTAAACATCCTCGACaGGAAa............................................. 43179_1_0_0_0_0_4 MATURE 5 0.54 1 0.26 4 0.73 16A4
.....TGTAAACATCCTCGACTGGAAGCc........................................... 15166_2_0_0_0_0_3 MATURE 5 0.54 2 0.52 3 0.55 23
.....TGTAAACATCCTCGACTGGAAGCg........................................... 36953_1_0_0_0_0_4 MATURE 5 0.54 1 0.26 4 0.73 23
.....TGTAAACATCCTCGACTaGAAGt............................................ 6252_2_0_0_0_0_2 MATURE 4 0.43 2 0.52 2 0.37 17A4
...ACaGTAAACATCCTCGACTGGAAGC............................................ 874_4_0_0_0_0_0 MATURE 4 0.43 4 1.04 0 0.00 2A22
.....TGTAAACATCCTCGACTGGAAGt............................................ 23073_2_0_0_0_0_2 MATURE 4 0.43 2 0.52 2 0.37 22
.....TGTAAACATCCTCGACTcGAAGt............................................ 18750_4_0_0_0_0_0 MATURE 4 0.43 4 1.04 0 0.00 17C4
.....TGTAAACATCCTCGACTGGAAGa............................................ 38987_1_0_0_0_0_3 MATURE 4 0.43 1 0.26 3 0.55 22
......GTAAACATCCTCGACTGtAAGCT........................................... 14407_3_0_0_0_0_1 MATURE 4 0.43 3 0.78 1 0.18 17T5
.....TGTAAACATCCTCGACTcGAA.............................................. 43211_3_0_0_0_0_1 MATURE 4 0.43 3 0.78 1 0.18 17C3
....CTGTAAACATCCTCGACTaGAAG............................................. 15414_3_0_0_0_0_1 MATURE 4 0.43 3 0.78 1 0.18 18A4
.....TGTAAACATCCTCGACaGGAA.............................................. 31074_3_0_0_0_0_1 MATURE 4 0.43 3 0.78 1 0.18 16A4
.....TGTAAACATCCTCGACTGaAAGt............................................ 24474_1_0_0_0_0_3 MATURE 4 0.43 1 0.26 3 0.55 18A3
.....TGTAAACATCCTCGACTGGAt.............................................. 27423_1_0_0_0_0_2 MATURE 3 0.32 1 0.26 2 0.37 20
......GTAAACATCCTCGACTGcAAGCT........................................... 31285_2_0_0_0_0_1 MATURE 3 0.32 2 0.52 1 0.18 17C5
.....TGTAAACATCCTCGACTtGAAG............................................. 28332_2_0_0_0_0_1 MATURE 3 0.32 2 0.52 1 0.18 17T4
......GTAAACATCCTCGACTGGtAGCT........................................... 17412_2_0_0_0_0_1 MATURE 3 0.32 2 0.52 1 0.18 18T4
.....TGTAAACATCCTCGACTaGAAa............................................. 33313_2_0_0_0_0_1 MATURE 3 0.32 2 0.52 1 0.18 17A3
.....TGTAAACATCCTCGAaTGGAA.............................................. 1192_1_0_0_0_0_2 MATURE 3 0.32 1 0.26 2 0.37 15A5
.....TGTAAACATCCTCGACTGaAAGCa........................................... 31524_1_0_0_0_0_2 MATURE 3 0.32 1 0.26 2 0.37 18A4
......GTAAACATCCTCGACTGaAAGCa........................................... 36481_3_0_0_0_0_0 MATURE 3 0.32 3 0.78 0 0.00 17A4
.....TGTAAACATCCTCGACTtGAA.............................................. 41941_1_0_0_0_0_2 MATURE 3 0.32 1 0.26 2 0.37 17T3
.....TGTAAACATCCTCGACTGaAAGCg........................................... 43384_0_0_0_0_0_3 MATURE 3 0.32 0 0.00 3 0.55 18A4
....CTGTAAACATCCTCGACTGGgAG............................................. 40144_1_0_0_0_0_2 MATURE 3 0.32 1 0.26 2 0.37 20G2
.....TGTAAACATCCTCGACTGGAAGCTa.......................................... 27878_0_0_0_0_0_3 MATURE 3 0.32 0 0.00 3 0.55 24
....CTGTAAACATCCTCGACTGGAAG............................................. 36469_2_0_0_0_0_1 MATURE 3 0.32 2 0.52 1 0.18 23
.....TGTAAACATCCTCGACTaGAA.............................................. 2449_0_0_0_0_0_2 MATURE 2 0.22 0 0.00 2 0.37 17A3
.....TGTAAACATCCTCGACTGtAAG............................................. 7771_0_0_0_0_0_2 MATURE 2 0.22 0 0.00 2 0.37 18T3
.....TGTAAACATCCTCGACTGtAAGa............................................ 31573_0_0_0_0_0_2 MATURE 2 0.22 0 0.00 2 0.37 18T3
.....TGTAAACATCCTCGACTGcAAG............................................. 42034_1_0_0_0_0_1 MATURE 2 0.22 1 0.26 1 0.18 18C3
......GTAAACATCCTCGACTGGAAGg............................................ 30971_1_0_0_0_0_1 MATURE 2 0.22 1 0.26 1 0.18 21
.....TGTAAACATCCTCGACTGGAAtCT........................................... 40758_1_0_0_0_0_1 MATURE 2 0.22 1 0.26 1 0.18 21T2
......GTAAACATCCTCGACTGGAA.............................................. 42698_0_0_0_0_0_2 MATURE 2 0.22 0 0.00 2 0.37 20
.....TGTAAACATCCTCGACTGtAAGC............................................ 42809_1_0_0_0_0_1 MATURE 2 0.22 1 0.26 1 0.18 18T4
.....TGTAAACATCCTCGAtTGGAA.............................................. 32549_1_0_0_0_0_1 MATURE 2 0.22 1 0.26 1 0.18 15T5
.....TGTAAACATCCTCGACTGGAgGCTt.......................................... 3639_0_0_0_0_0_2 MATURE 2 0.22 0 0.00 2 0.37 20G3
.....TGTAAACATCCTCGACTGGAAGCTG.......................................... 40727_0_0_0_0_0_2 MATURE 2 0.22 0 0.00 2 0.37 25
......GTAAACATCCTCGACTGGAAGCTt.......................................... 40917_2_0_0_0_0_0 MATURE 2 0.22 2 0.52 0 0.00 23
......GTAAACATCCTCGACTGGAAGCg........................................... 4478_0_0_0_0_0_2 MATURE 2 0.22 0 0.00 2 0.37 22
......GTAAACATCCTCGACTaGAAGC............................................ 15461_2_0_0_0_0_0 MATURE 2 0.22 2 0.52 0 0.00 16A5
.....TGTAAACATCCTCGACTGGAtGC............................................ 9772_2_0_0_0_0_0 MATURE 2 0.22 2 0.52 0 0.00 20T2
......GTAAACATCCTCGACTGaAAGa............................................ 2276_2_0_0_0_0_0 MATURE 2 0.22 2 0.52 0 0.00 17A3
.....TGTAAACATCCTCGACTtGAAa............................................. 22341_0_0_0_0_0_1 MATURE 1 0.11 0 0.00 1 0.18 17T3
....CTGTAAACATCCTCGACTGtAAGCT........................................... 20077_1_0_0_0_0_0 MATURE 1 0.11 1 0.26 0 0.00 19T5
.....TGTAAACATCCTCGACgGGAA.............................................. 38482_1_0_0_0_0_0 MATURE 1 0.11 1 0.26 0 0.00 16G4
.....TGTAAACATCCTCGACTGaAAt............................................. 44121_1_0_0_0_0_0 MATURE 1 0.11 1 0.26 0 0.00 18A2
......GTAAACATCCTCGACTaGAAG............................................. 44138_0_0_0_0_0_1 MATURE 1 0.11 0 0.00 1 0.18 16A4
......GTAAACATCCTCGACTGGAAGCTGT......................................... 31528_0_0_0_0_0_1 MATURE 1 0.11 0 0.00 1 0.18 25
......GTAAACATCCTCGACTGGAAGCTa.......................................... 36985_1_0_0_0_0_0 MATURE 1 0.11 1 0.26 0 0.00 23
.....TGTAAACATCCTCGACTGG................................................ 24022_1_0_0_0_0_0 MATURE 1 0.11 1 0.26 0 0.00 19
......GTAcACATCCTCGACTGGAAGCT........................................... 31662_1_0_0_0_0_0 MATURE 1 0.11 1 0.26 0 0.00 3C19
....CTGTAAACATCCTCGACTtGAAG............................................. 25702_1_0_0_0_0_0 MATURE 1 0.11 1 0.26 0 0.00 18T4
.....TGTAAACATCCTCGACTGGAAGg............................................ 34618_0_0_0_0_0_1 MATURE 1 0.11 0 0.00 1 0.18 22
....CTGTAAACATCCTCGACTaGAAGC............................................ 20364_0_0_0_0_0_1 MATURE 1 0.11 0 0.00 1 0.18 18A5
......GTAAACATCCTCGACTGGAc.............................................. 43662_1_0_0_0_0_0 MATURE 1 0.11 1 0.26 0 0.00 19
....CTGTAAACATCCTCGACTGaAAGC............................................ 24390_0_0_0_0_0_1 MATURE 1 0.11 0 0.00 1 0.18 19A4
......GTAAACATCCTCGACTGGAAa............................................. 4228_0_0_0_0_0_1 MATURE 1 0.11 0 0.00 1 0.18 20
.....TGTAAACATCCTCGACTGcAAa............................................. 23836_0_0_0_0_0_1 MATURE 1 0.11 0 0.00 1 0.18 18C2
.....TGTAAACATCCTCGACTaGAAGa............................................ 4875_0_0_0_0_0_1 MATURE 1 0.11 0 0.00 1 0.18 17A4
......GTAAACATCCTCGACTGGgAGCg........................................... 33533_0_0_0_0_0_1 MATURE 1 0.11 0 0.00 1 0.18 18G3
.....TGTAAACATCCTCGACTGcAAGCa........................................... 28688_0_0_0_0_0_1 MATURE 1 0.11 0 0.00 1 0.18 18C4
.....TGTAAACATCCTCGACTGtAA.............................................. 43540_1_0_0_0_0_0 MATURE 1 0.11 1 0.26 0 0.00 18T2
.....TGTAAACATCCTCGACTcGAAa............................................. 43827_0_0_0_0_0_1 MATURE 1 0.11 0 0.00 1 0.18 17C3
.....TGTAAACATCCTCGACaGGAAt............................................. 32977_1_0_0_0_0_0 MATURE 1 0.11 1 0.26 0 0.00 16A4
.........AACATCCTCGACTGGAAGCc........................................... 18035_0_0_0_0_0_1 MATURE 1 0.11 0 0.00 1 0.18 19
......GTAAACATCCTCGACTGtAAGa............................................ 31025_1_0_0_0_0_0 MATURE 1 0.11 1 0.26 0 0.00 17T3
....CTGTAAACATCCTCGACTGtAAG............................................. 27025_0_0_0_0_0_1 MATURE 1 0.11 0 0.00 1 0.18 19T3
....CTGTAAACATCCTCGACTGaAAG............................................. 28247_1_0_0_0_0_0 MATURE 1 0.11 1 0.26 0 0.00 19A3
......GTAAACATCCTCGACTcGAAGg............................................ 21161_0_0_0_0_0_1 MATURE 1 0.11 0 0.00 1 0.18 16C4
.....TGTAcACATCCTCGACTGGAAGCa........................................... 10361_1_0_0_0_0_0 MATURE 1 0.11 1 0.26 0 0.00 4C18
.....TGTAAACATCCTCGACTGcAAGt............................................ 40753_1_0_0_0_0_0 MATURE 1 0.11 1 0.26 0 0.00 18C3
......GTAAACATCCTCGACTGGAAaCTt.......................................... 11932_1_0_0_0_0_0 MATURE 1 0.11 1 0.26 0 0.00 20A2
......GTAAACATCCTCGACTGGtAGCTt.......................................... 20761_0_0_0_0_0_1 MATURE 1 0.11 0 0.00 1 0.18 18T4
.....TGTAAACATCCTCGACTGcAAGC............................................ 33608_0_0_0_0_0_1 MATURE 1 0.11 0 0.00 1 0.18 18C4
......GTAAACATCCTCGACTGaAAGCc........................................... 34449_1_0_0_0_0_0 MATURE 1 0.11 1 0.26 0 0.00 17A4
.....TGTAAACATCCTCGACTcGAAt............................................. 20989_1_0_0_0_0_0 MATURE 1 0.11 1 0.26 0 0.00 17C3
.....TGTAAACATCCTCGACTGGAtGCTt.......................................... 17378_1_0_0_0_0_0 MATURE 1 0.11 1 0.26 0 0.00 20T3
....CTGTAAACATCCTCGACaGGAAG............................................. 19497_1_0_0_0_0_0 MATURE 1 0.11 1 0.26 0 0.00 17A5
....CTGTAAACATCCTCGACTGGAgGC............................................ 33516_0_0_0_0_0_1 MATURE 1 0.11 0 0.00 1 0.18 21G2
......GTAAACATCCTCGACTGGAAGCTc.......................................... 961_1_0_0_0_0_0 MATURE 1 0.11 1 0.26 0 0.00 23
.....TGTAAACATCCTCGACTaGAAt............................................. 33478_1_0_0_0_0_0 MATURE 1 0.11 1 0.26 0 0.00 17A3
.....TGTAAACATCCTCGACTGcAA.............................................. 41198_0_0_0_0_0_1 MATURE 1 0.11 0 0.00 1 0.18 18C2
......GTAAACATCCTCGACTGGgAGCT........................................... 41675_1_0_0_0_0_0 MATURE 1 0.11 1 0.26 0 0.00 18G4
.....TGTAAACATCCTCGACTGGtAGCT........................................... 19069_0_0_0_0_0_1 MATURE 1 0.11 0 0.00 1 0.18 19T4
......GTAAACATCCTCGACTGGAgGCT........................................... 16225_0_0_0_0_0_1 MATURE 1 0.11 0 0.00 1 0.18 19G3
.....TGTAAACATCCTCGACTGGA............................................... 37700_0_0_0_0_0_1 MATURE 1 0.11 0 0.00 1 0.18 20
.....TGTAAACATCCTCGACTGcAAGCg........................................... 37292_0_0_0_0_0_1 MATURE 1 0.11 0 0.00 1 0.18 18C4
.....TGTAAACATCCTCGAgTGGAA.............................................. 26322_0_0_0_0_0_1 MATURE 1 0.11 0 0.00 1 0.18 15G5
.....TGTAAACATCCTCGACTGaAAGCc........................................... 9123_1_0_0_0_0_0 MATURE 1 0.11 1 0.26 0 0.00 18A4
---------- ---------- ----------
930 385 545
(41.40) (58.60)
*** MATURESTAR ***
_______________________________________________________________________
GCGACTGTAAACATCCTCGACTGGAAGCTGTGAAGCCACAAATGGGCTTTCAGTCGGATGTTTGCAGCTGC REF 1 23279108 - 23279178
TGTAAACATCCTCGACTGGAAG MATURE 1 23279114 - 23279205 mmu-miR-30a +
CTTTCAGTCGGATGTTTGCAGC MATURESTAR 1 23279155 - 23279246 mmu-miR-30a* +
_______________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
.............................................GCTTTCgGTCGGATGTTTGCAG..... 26758_1_0_0_0_0_0 MATURESTAR 1 14.29 1 20.00 0 0.00 6G15
.............................................GCTTTCAGTCGGATGTTTGCAG..... 33553_1_0_0_0_0_0 MATURESTAR 1 14.29 1 20.00 0 0.00 22
.............................................GCTTTCAGTCGGATGcTTGCA...... 553_1_0_0_0_0_0 MATURESTAR 1 14.29 1 20.00 0 0.00 15C5
.............................................GCTTTCAGTCGGATGTcTGCAG..... 36842_1_0_0_0_0_0 MATURESTAR 1 14.29 1 20.00 0 0.00 16C5
..............................................CTTTCAGTCGGATGTTTGCAaCT... 13052_0_0_0_0_0_1 MATURESTAR 1 14.29 0 0.00 1 50.00 20A2
..............................................CTTTCAGTCGGATGTTTGCAG..... 38252_0_0_0_0_0_1 MATURESTAR 1 14.29 0 0.00 1 50.00 21
..............................................CTTTCAGTCGGATGTTTGgAGC.... 36115_1_0_0_0_0_0 MATURESTAR 1 14.29 1 20.00 0 0.00 18G3
---------- ---------- ----------
7 5 2
(71.43) (28.57)
((( SUMMARY )))
-CAT- -REST- -ACT- -TOTAL- -TOTAL%-
---------- ---------- ---------- ---------- ----------
MATURE 385 545 930 99.25%
MATURESTAR 5 2 7 0.75%
---------- ---------- ----------
390 547 937
[END]