[BEGIN]

REFERENCE HAIRPIN
**********************************************************************************************************************
ID                 : mmu-mir-301b
DESCRIPTION        : mmu-mir-301b MI0004122 Mus musculus mir-301b stem-loop
CHROMOSOME         : 16
SPAN               : 17124493 - 17124589
LENGTH             : 97
SEQUENCE           : TTTCCTGCTGGCTGCGGGTGCTCTGACTAGGTTGCACTACTGTGCTGTGAGAAGCAGTGCAATGGTATTGTCAAAGCATCTGGGACCAGCCTCGAAG
OVERHANG THRESHOLD : 40%
**********************************************************************************************************************


TARGET
******************************
CATEGORY   : MATURE
ID         : mmu-miR-301b
ACCID      : MI0004122
PARENT     : mmu-mir-301b
CHROMOSOME : 16
START      : 17124493
STOP       : 17124589
OFFSET     : 55..77
SEQUENCE   : CAGTGCAATGGTATTGTCAAAGC
STRAND     : -
******************************



*** MATURE ***
_________________________________________________________________________________________________
TTTCCTGCTGGCTGCGGGTGCTCTGACTAGGTTGCACTACTGTGCTGTGAGAAGCAGTGCAATGGTATTGTCAAAGCATCTGGGACCAGCCTCGAAG REF                  16                   17124493 - 17124589  
                                                      CAGTGCAATGGTATTGTCAAAGC                     MATURE               16                   17124548 - 17124666  mmu-miR-301b         -                    
_________________________________________________________________________________________________

                                                                                             -SEQ-              -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
.....................................................GCAGTGCAATGGTATTGTCAAAG......................   36011_2_0_0_0_0_8       MATURE           10        12.99            2         6.90            8        16.67                        23   
......................................................CAGTGCAATGGTATTGTCAAAGCAT...................    5256_1_0_0_0_0_9       MATURE           10        12.99            1         3.45            9        18.75                        25   
.....................................................GCAGTGCAATGGTATTGTCAAAGC.....................   39020_4_0_0_0_0_2       MATURE            6         7.79            4        13.79            2         4.17                        24   
.....................................................GCAGTGCAATGGTATTGTCAAAGt.....................   36266_1_0_0_0_0_4       MATURE            5         6.49            1         3.45            4         8.33                        23   
......................................................CAGTGCAATGGTATTGTCAAAaCAT...................   33148_1_0_0_0_0_3       MATURE            4         5.19            1         3.45            3         6.25                      21A3   
.....................................................GCAGTGCAATGGTATTGTCAAA.......................   14909_3_0_0_0_0_0       MATURE            3         3.90            3        10.34            0         0.00                        22   
......................................................CAGTGCAATGGTATTGTCAgAGCAT...................   41589_1_0_0_0_0_2       MATURE            3         3.90            1         3.45            2         4.17                      19G5   
.....................................................GCAGTGCAATGGTATTaTCAAA.......................   41878_2_0_0_0_0_1       MATURE            3         3.90            2         6.90            1         2.08                      16A5   
......................................................CAGTGCAATGGTATTGTCAtAGCAT...................   14748_1_0_0_0_0_2       MATURE            3         3.90            1         3.45            2         4.17                      19T5   
.....................................................GCAGTGCAATGGTATTGaCAAA.......................   38722_1_0_0_0_0_1       MATURE            2         2.60            1         3.45            1         2.08                      17A4   
.....................................................GCAGTGCAATGGTATTGTCAAAGa.....................   43698_1_0_0_0_0_1       MATURE            2         2.60            1         3.45            1         2.08                        23   
.......................................................AGTGCAATGGTATTGTCAAAGCATt..................    1293_1_0_0_0_0_1       MATURE            2         2.60            1         3.45            1         2.08                        24   
......................................................CAGTGCAATGGTATTGTCAAA.......................   37602_1_0_0_0_0_0       MATURE            1         1.30            1         3.45            0         0.00                        21   
.....................................................GCAGTGCAATGGTATTGTtAAAGC.....................   36280_0_0_0_0_0_1       MATURE            1         1.30            0         0.00            1         2.08                      18T5   
.....................................................GCAGTGCAATGGTATTGTtAAAGt.....................   32268_0_0_0_0_0_1       MATURE            1         1.30            0         0.00            1         2.08                      18T4   
.....................................................GCAGTGCAATGGTATTGTCA.........................   40070_0_0_0_0_0_1       MATURE            1         1.30            0         0.00            1         2.08                        20   
......................................................CAGTGCAATGGTATTGTCAAcGCAT...................    4398_1_0_0_0_0_0       MATURE            1         1.30            1         3.45            0         0.00                      20C4   
.......................................................AGTGCAATGGTATTGTCAAAGCAT...................   16914_1_0_0_0_0_0       MATURE            1         1.30            1         3.45            0         0.00                        24   
.....................................................GCAGTGCAATGGTATTGTCAAtGC.....................   30765_1_0_0_0_0_0       MATURE            1         1.30            1         3.45            0         0.00                      21T2   
....................................................AGCAGTGCAATGGTATTGTCAgAG......................    2177_0_0_0_0_0_1       MATURE            1         1.30            0         0.00            1         2.08                      21G2   
.....................................................GCAGTGCAATGGTATTGaCAAAG......................   18466_0_0_0_0_0_1       MATURE            1         1.30            0         0.00            1         2.08                      17A5   
.........................................................TGCAATGGTATTGTCAAAcCAT...................   13357_1_0_0_0_0_0       MATURE            1         1.30            1         3.45            0         0.00                      18C3   
.....................................................GCAGTGCAATGGTATTGTCAAg.......................    6370_1_0_0_0_0_0       MATURE            1         1.30            1         3.45            0         0.00                        21   
......................................................CAGTGCAATGGTATTGTCAAAGC.....................   25536_1_0_0_0_0_0       MATURE            1         1.30            1         3.45            0         0.00                        23   
.....................................................GCAGTGCAATGGTATTGTCAAt.......................   22271_0_0_0_0_0_1       MATURE            1         1.30            0         0.00            1         2.08                        21   
.....................................................GCAGTGCAATGGTATTGTCAcAGt.....................   38607_0_0_0_0_0_1       MATURE            1         1.30            0         0.00            1         2.08                      20C2   
.......................................................AGTGCAATGGTATTGTCAAAGCATa..................   34767_0_0_0_0_0_1       MATURE            1         1.30            0         0.00            1         2.08                        24   
......................................................CAGTGCAATGGTATTGTCtAAGC.....................    9035_0_0_0_0_0_1       MATURE            1         1.30            0         0.00            1         2.08                      18T4   
.....................................................GCAGTGCAATGGTATTGTCAtAGC.....................    1174_1_0_0_0_0_0       MATURE            1         1.30            1         3.45            0         0.00                      20T3   
.......................................................AGTGCAATGGTATTGTCAAAaCATt..................   17614_0_0_0_0_0_1       MATURE            1         1.30            0         0.00            1         2.08                      20A3   
.....................................................GCAGTGCAATGGTATTGTCAA........................   28561_1_0_0_0_0_0       MATURE            1         1.30            1         3.45            0         0.00                        21   
......................................................CAGTGCAATGGTATTGTCAAAGt.....................     457_0_0_0_0_0_1       MATURE            1         1.30            0         0.00            1         2.08                        22   
.......................................................AGTGCAATGGTATTGTCAAtGCAT...................    5565_1_0_0_0_0_0       MATURE            1         1.30            1         3.45            0         0.00                      19T4   
.....................................................GCAGTGCAATGGTATTGTCAAAGCA....................   18097_0_0_0_0_0_1       MATURE            1         1.30            0         0.00            1         2.08                        25   
.....................................................GCAGTGCAATGGTATTGTaAAAG......................   28783_0_0_0_0_0_1       MATURE            1         1.30            0         0.00            1         2.08                      18A4   
.......................................................AGTGCAATGGTATTGTCAAAGCA....................   28100_0_0_0_0_0_1       MATURE            1         1.30            0         0.00            1         2.08                        23   
                                                                                                                                      ----------                ----------                ----------   
                                                                                                                                              77                        29                        48                                          
                                                                                                                                                                   (37.66)                   (62.34)                                       




((( SUMMARY )))

          -CAT-          -REST-           -ACT-         -TOTAL-        -TOTAL%-
     ----------      ----------      ----------      ----------      ----------
         MATURE              29              48              77         100.00%
                     ----------      ----------      ----------                
                             29              48              77                



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