[BEGIN]

REFERENCE HAIRPIN
********************************************************************************************
ID                 : mmu-mir-29b-1
DESCRIPTION        : mmu-mir-29b-1 MI0000143 Mus musculus miR-29b-1 stem-loop
CHROMOSOME         : 6
SPAN               : 31013023 - 31013093
LENGTH             : 71
SEQUENCE           : AGGAAGCTGGTTTCATATGGTGGTTTAGATTTAAATAGTGATTGTCTAGCACCATTTGAAATCAGTGTTCT
OVERHANG THRESHOLD : 40%
********************************************************************************************


TARGET
******************************
CATEGORY   : MATURE
ID         : mmu-miR-29b
ACCID      : MI0000143
PARENT     : mmu-mir-29b-1
CHROMOSOME : 6
START      : 31013023
STOP       : 31013093
OFFSET     : 47..69
SEQUENCE   : TAGCACCATTTGAAATCAGTGTT
STRAND     : -
******************************


TARGET
******************************
CATEGORY   : MATURESTAR
ID         : mmu-miR-29b*
ACCID      : MI0000143
PARENT     : mmu-mir-29b-1
CHROMOSOME : 6
START      : 31013023
STOP       : 31013093
OFFSET     : 6..27
SEQUENCE   : GCTGGTTTCATATGGTGGTTTA
STRAND     : -
******************************



*** MATURE ***
_______________________________________________________________________
AGGAAGCTGGTTTCATATGGTGGTTTAGATTTAAATAGTGATTGTCTAGCACCATTTGAAATCAGTGTTCT REF                  6                    31013023 - 31013093  
                                              TAGCACCATTTGAAATCAGTGTT   MATURE               6                    31013070 - 31013162  mmu-miR-29b          -                    
     GCTGGTTTCATATGGTGGTTTA                                             MATURESTAR           6                    31013029 - 31013120  mmu-miR-29b*         -                    
_______________________________________________________________________

                                                                   -SEQ-              -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
...............................................AGCACCATTTGAAATCAGTGTTCT.   42449_6_0_0_0_0_2       MATURE            8        18.60            6        26.09            2        10.00                        24   
...............................................AGCACCATTTGAAATCAGTGTTC..   43761_4_0_0_0_0_4       MATURE            8        18.60            4        17.39            4        20.00                        23   
...............................................AGCACCATTTGAAATCAaTGTTC..   38044_4_0_0_0_0_2       MATURE            6        13.95            4        17.39            2        10.00                      17A5   
...............................................AGCACCATTTGAAATCAcTGTTC..   36746_1_0_0_0_0_2       MATURE            3         6.98            1         4.35            2        10.00                      17C5   
..............................................TAGCACCATTTGAAATCAGTGTTC..   28726_1_0_0_0_0_2       MATURE            3         6.98            1         4.35            2        10.00                        24   
...............................................AGCACCATTTGAAATCAGTGTTCa.   40099_1_0_0_0_0_2       MATURE            3         6.98            1         4.35            2        10.00                        23   
...............................................AGCACCATTTGAAATCAGTaTTCT.   44177_1_0_0_0_0_1       MATURE            2         4.65            1         4.35            1         5.00                      19A4   
..............................................TAGCACCATTTGAAATCAcTGTTC..   37304_2_0_0_0_0_0       MATURE            2         4.65            2         8.70            0         0.00                      18C5   
..............................................TAGCACCATTTGAAATCAaTGTTC..   12779_0_0_0_0_0_2       MATURE            2         4.65            0         0.00            2        10.00                      18A5   
................................................GCACCATTTGAAATCAGTGTTCa.    1181_1_0_0_0_0_0       MATURE            1         2.33            1         4.35            0         0.00                        22   
..............................................TAGCACCATTTGAAATCAGTGTTCc.    6372_0_0_0_0_0_1       MATURE            1         2.33            0         0.00            1         5.00                        24   
...............................................AGCACCATTTGAAATCAGTGTTCc.   41442_0_0_0_0_0_1       MATURE            1         2.33            0         0.00            1         5.00                        23   
..............................................TAGCACCATTTGAAATCAGTaTTCT.   16837_0_0_0_0_0_1       MATURE            1         2.33            0         0.00            1         5.00                      20A4   
..............................................TAGCACCATTTGAAATCAGTGTTCT.    1347_1_0_0_0_0_0       MATURE            1         2.33            1         4.35            0         0.00                        25   
................................................GCACCATTTGAAATCAaTGTTC..   11647_1_0_0_0_0_0       MATURE            1         2.33            1         4.35            0         0.00                      16A5   
                                                                                                            ----------                ----------                ----------   
                                                                                                                    43                        23                        20                                          
                                                                                                                                         (53.49)                   (46.51)                                       




*** MATURESTAR ***
_______________________________________________________________________
AGGAAGCTGGTTTCATATGGTGGTTTAGATTTAAATAGTGATTGTCTAGCACCATTTGAAATCAGTGTTCT REF                  6                    31013023 - 31013093  
                                              TAGCACCATTTGAAATCAGTGTT   MATURE               6                    31013070 - 31013162  mmu-miR-29b          -                    
     GCTGGTTTCATATGGTGGTTTA                                             MATURESTAR           6                    31013029 - 31013120  mmu-miR-29b*         -                    
_______________________________________________________________________

                                                                   -SEQ-              -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
.....GCTGGTTTCATATGGTGGTTTAGA...........................................   21545_1_0_0_0_0_9   MATURESTAR           10        43.48            1        25.00            9        47.37                        24   
.....GCTGGTTTCATATGGTGGTTTAGAa..........................................   15698_1_0_0_0_0_1   MATURESTAR            2         8.70            1        25.00            1         5.26                        24   
.....GCTGGTTTCATATGGTGGgTTAGt...........................................   11383_0_0_0_0_0_1   MATURESTAR            1         4.35            0         0.00            1         5.26                      18G4   
.....GCTGGTTTCATATGGTGGTTcAGt...........................................   28089_1_0_0_0_0_0   MATURESTAR            1         4.35            1        25.00            0         0.00                      20C2   
.......TGGTTTCATATGGTGGTTTcGA...........................................   15172_0_0_0_0_0_1   MATURESTAR            1         4.35            0         0.00            1         5.26                      19C2   
.....GCTGGTTTCATATGGTGaTTTAG............................................     565_0_0_0_0_0_1   MATURESTAR            1         4.35            0         0.00            1         5.26                      17A5   
.....GCTGGTTTCATATGGTGGTcTAGA...........................................   13557_0_0_0_0_0_1   MATURESTAR            1         4.35            0         0.00            1         5.26                      19C4   
.....GCTGGTTTCATATGGTGGTgTAGA...........................................   27623_0_0_0_0_0_1   MATURESTAR            1         4.35            0         0.00            1         5.26                      19G4   
.....GCTGGTTTCATATGGTGGTcTAG............................................   40585_0_0_0_0_0_1   MATURESTAR            1         4.35            0         0.00            1         5.26                      19C3   
.....GCTGGTTTCATATGGTGGTTTAG............................................   30599_0_0_0_0_0_1   MATURESTAR            1         4.35            0         0.00            1         5.26                        23   
.....GCTGGTTTCATATGGTGGTaTAG............................................   27100_0_0_0_0_0_1   MATURESTAR            1         4.35            0         0.00            1         5.26                      19A3   
.....GCTGGTTTCATATGGTGGaTTAGA...........................................    4054_0_0_0_0_0_1   MATURESTAR            1         4.35            0         0.00            1         5.26                      18A5   
.....GCTGGTTTCATATGGTGGTaTAGA...........................................   40915_1_0_0_0_0_0   MATURESTAR            1         4.35            1        25.00            0         0.00                      19A4   
                                                                                                            ----------                ----------                ----------   
                                                                                                                    23                         4                        19                                          
                                                                                                                                         (17.39)                   (82.61)                                       




((( SUMMARY )))

          -CAT-          -REST-           -ACT-         -TOTAL-        -TOTAL%-
     ----------      ----------      ----------      ----------      ----------
         MATURE              23              20              43          65.15%
     MATURESTAR               4              19              23          34.85%
                     ----------      ----------      ----------                
                             27              39              66                



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