[BEGIN]
REFERENCE HAIRPIN
********************************************************************************************
ID : mmu-mir-29b-1
DESCRIPTION : mmu-mir-29b-1 MI0000143 Mus musculus miR-29b-1 stem-loop
CHROMOSOME : 6
SPAN : 31013023 - 31013093
LENGTH : 71
SEQUENCE : AGGAAGCTGGTTTCATATGGTGGTTTAGATTTAAATAGTGATTGTCTAGCACCATTTGAAATCAGTGTTCT
OVERHANG THRESHOLD : 40%
********************************************************************************************
TARGET
******************************
CATEGORY : MATURE
ID : mmu-miR-29b
ACCID : MI0000143
PARENT : mmu-mir-29b-1
CHROMOSOME : 6
START : 31013023
STOP : 31013093
OFFSET : 47..69
SEQUENCE : TAGCACCATTTGAAATCAGTGTT
STRAND : -
******************************
TARGET
******************************
CATEGORY : MATURESTAR
ID : mmu-miR-29b*
ACCID : MI0000143
PARENT : mmu-mir-29b-1
CHROMOSOME : 6
START : 31013023
STOP : 31013093
OFFSET : 6..27
SEQUENCE : GCTGGTTTCATATGGTGGTTTA
STRAND : -
******************************
*** MATURE ***
_______________________________________________________________________
AGGAAGCTGGTTTCATATGGTGGTTTAGATTTAAATAGTGATTGTCTAGCACCATTTGAAATCAGTGTTCT REF 6 31013023 - 31013093
TAGCACCATTTGAAATCAGTGTT MATURE 6 31013070 - 31013162 mmu-miR-29b -
GCTGGTTTCATATGGTGGTTTA MATURESTAR 6 31013029 - 31013120 mmu-miR-29b* -
_______________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
...............................................AGCACCATTTGAAATCAGTGTTCT. 42449_6_0_0_0_0_2 MATURE 8 18.60 6 26.09 2 10.00 24
...............................................AGCACCATTTGAAATCAGTGTTC.. 43761_4_0_0_0_0_4 MATURE 8 18.60 4 17.39 4 20.00 23
...............................................AGCACCATTTGAAATCAaTGTTC.. 38044_4_0_0_0_0_2 MATURE 6 13.95 4 17.39 2 10.00 17A5
...............................................AGCACCATTTGAAATCAcTGTTC.. 36746_1_0_0_0_0_2 MATURE 3 6.98 1 4.35 2 10.00 17C5
..............................................TAGCACCATTTGAAATCAGTGTTC.. 28726_1_0_0_0_0_2 MATURE 3 6.98 1 4.35 2 10.00 24
...............................................AGCACCATTTGAAATCAGTGTTCa. 40099_1_0_0_0_0_2 MATURE 3 6.98 1 4.35 2 10.00 23
...............................................AGCACCATTTGAAATCAGTaTTCT. 44177_1_0_0_0_0_1 MATURE 2 4.65 1 4.35 1 5.00 19A4
..............................................TAGCACCATTTGAAATCAcTGTTC.. 37304_2_0_0_0_0_0 MATURE 2 4.65 2 8.70 0 0.00 18C5
..............................................TAGCACCATTTGAAATCAaTGTTC.. 12779_0_0_0_0_0_2 MATURE 2 4.65 0 0.00 2 10.00 18A5
................................................GCACCATTTGAAATCAGTGTTCa. 1181_1_0_0_0_0_0 MATURE 1 2.33 1 4.35 0 0.00 22
..............................................TAGCACCATTTGAAATCAGTGTTCc. 6372_0_0_0_0_0_1 MATURE 1 2.33 0 0.00 1 5.00 24
...............................................AGCACCATTTGAAATCAGTGTTCc. 41442_0_0_0_0_0_1 MATURE 1 2.33 0 0.00 1 5.00 23
..............................................TAGCACCATTTGAAATCAGTaTTCT. 16837_0_0_0_0_0_1 MATURE 1 2.33 0 0.00 1 5.00 20A4
..............................................TAGCACCATTTGAAATCAGTGTTCT. 1347_1_0_0_0_0_0 MATURE 1 2.33 1 4.35 0 0.00 25
................................................GCACCATTTGAAATCAaTGTTC.. 11647_1_0_0_0_0_0 MATURE 1 2.33 1 4.35 0 0.00 16A5
---------- ---------- ----------
43 23 20
(53.49) (46.51)
*** MATURESTAR ***
_______________________________________________________________________
AGGAAGCTGGTTTCATATGGTGGTTTAGATTTAAATAGTGATTGTCTAGCACCATTTGAAATCAGTGTTCT REF 6 31013023 - 31013093
TAGCACCATTTGAAATCAGTGTT MATURE 6 31013070 - 31013162 mmu-miR-29b -
GCTGGTTTCATATGGTGGTTTA MATURESTAR 6 31013029 - 31013120 mmu-miR-29b* -
_______________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
.....GCTGGTTTCATATGGTGGTTTAGA........................................... 21545_1_0_0_0_0_9 MATURESTAR 10 43.48 1 25.00 9 47.37 24
.....GCTGGTTTCATATGGTGGTTTAGAa.......................................... 15698_1_0_0_0_0_1 MATURESTAR 2 8.70 1 25.00 1 5.26 24
.....GCTGGTTTCATATGGTGGgTTAGt........................................... 11383_0_0_0_0_0_1 MATURESTAR 1 4.35 0 0.00 1 5.26 18G4
.....GCTGGTTTCATATGGTGGTTcAGt........................................... 28089_1_0_0_0_0_0 MATURESTAR 1 4.35 1 25.00 0 0.00 20C2
.......TGGTTTCATATGGTGGTTTcGA........................................... 15172_0_0_0_0_0_1 MATURESTAR 1 4.35 0 0.00 1 5.26 19C2
.....GCTGGTTTCATATGGTGaTTTAG............................................ 565_0_0_0_0_0_1 MATURESTAR 1 4.35 0 0.00 1 5.26 17A5
.....GCTGGTTTCATATGGTGGTcTAGA........................................... 13557_0_0_0_0_0_1 MATURESTAR 1 4.35 0 0.00 1 5.26 19C4
.....GCTGGTTTCATATGGTGGTgTAGA........................................... 27623_0_0_0_0_0_1 MATURESTAR 1 4.35 0 0.00 1 5.26 19G4
.....GCTGGTTTCATATGGTGGTcTAG............................................ 40585_0_0_0_0_0_1 MATURESTAR 1 4.35 0 0.00 1 5.26 19C3
.....GCTGGTTTCATATGGTGGTTTAG............................................ 30599_0_0_0_0_0_1 MATURESTAR 1 4.35 0 0.00 1 5.26 23
.....GCTGGTTTCATATGGTGGTaTAG............................................ 27100_0_0_0_0_0_1 MATURESTAR 1 4.35 0 0.00 1 5.26 19A3
.....GCTGGTTTCATATGGTGGaTTAGA........................................... 4054_0_0_0_0_0_1 MATURESTAR 1 4.35 0 0.00 1 5.26 18A5
.....GCTGGTTTCATATGGTGGTaTAGA........................................... 40915_1_0_0_0_0_0 MATURESTAR 1 4.35 1 25.00 0 0.00 19A4
---------- ---------- ----------
23 4 19
(17.39) (82.61)
((( SUMMARY )))
-CAT- -REST- -ACT- -TOTAL- -TOTAL%-
---------- ---------- ---------- ---------- ----------
MATURE 23 20 43 65.15%
MATURESTAR 4 19 23 34.85%
---------- ---------- ----------
27 39 66
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