[BEGIN]

REFERENCE HAIRPIN
************************************************************************************
ID                 : mmu-mir-299
DESCRIPTION        : mmu-mir-299 MI0000399 Mus musculus miR-299 stem-loop
CHROMOSOME         : 12
SPAN               : 110948848 - 110948910
LENGTH             : 63
SEQUENCE           : AAGAAATGGTTTACCGTCCCACATACATTTTGAGTATGTATGTGGGACGGTAAACCGCTTCTT
OVERHANG THRESHOLD : 40%
************************************************************************************


TARGET
******************************
CATEGORY   : MATURE
ID         : mmu-miR-299
ACCID      : MI0000399
PARENT     : mmu-mir-299
CHROMOSOME : 12
START      : 110948848
STOP       : 110948910
OFFSET     : 39..60
SEQUENCE   : TATGTGGGACGGTAAACCGCTT
STRAND     : +
******************************


TARGET
******************************
CATEGORY   : MATURESTAR
ID         : mmu-miR-299*
ACCID      : MI0000399
PARENT     : mmu-mir-299
CHROMOSOME : 12
START      : 110948848
STOP       : 110948910
OFFSET     : 7..28
SEQUENCE   : TGGTTTACCGTCCCACATACAT
STRAND     : +
******************************



*** MATURE ***
_______________________________________________________________
AAGAAATGGTTTACCGTCCCACATACATTTTGAGTATGTATGTGGGACGGTAAACCGCTTCTT REF                  12                   110948848 - 110948910 
                                      TATGTGGGACGGTAAACCGCTT    MATURE               12                   110948887 - 110948970 mmu-miR-299          +                    
      TGGTTTACCGTCCCACATACAT                                    MATURESTAR           12                   110948855 - 110948938 mmu-miR-299*         +                    
_______________________________________________________________

                                                           -SEQ-              -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
....................................TGTATGTGGGACGGTAAACCGCTTt...   33260_1_0_0_0_0_0       MATURE            1       100.00            1       100.00            0            0                        24   
                                                                                                    ----------                ----------                ----------   
                                                                                                             1                         1                         0                                          
                                                                                                                                (100.00)                    (0.00)                                       




*** MATURESTAR ***
_______________________________________________________________
AAGAAATGGTTTACCGTCCCACATACATTTTGAGTATGTATGTGGGACGGTAAACCGCTTCTT REF                  12                   110948848 - 110948910 
                                      TATGTGGGACGGTAAACCGCTT    MATURE               12                   110948887 - 110948970 mmu-miR-299          +                    
      TGGTTTACCGTCCCACATACAT                                    MATURESTAR           12                   110948855 - 110948938 mmu-miR-299*         +                    
_______________________________________________________________

                                                           -SEQ-              -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
......TGGTTTACCGTCCCACATACAT....................................   30494_1_0_0_0_0_0   MATURESTAR            1       100.00            1       100.00            0            0                        22   
                                                                                                    ----------                ----------                ----------   
                                                                                                             1                         1                         0                                          
                                                                                                                                (100.00)                    (0.00)                                       




((( SUMMARY )))

          -CAT-          -REST-           -ACT-         -TOTAL-        -TOTAL%-
     ----------      ----------      ----------      ----------      ----------
         MATURE               1               0               1          50.00%
     MATURESTAR               1               0               1          50.00%
                     ----------      ----------      ----------                
                              2               0               2                



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