[BEGIN]

REFERENCE HAIRPIN
***********************************************************************************************************************
ID                 : mmu-mir-297c
DESCRIPTION        : mmu-mir-297c MI0005492 Mus musculus miR-297c stem-loop
CHROMOSOME         : 2
SPAN               : 10430643 - 10430740
LENGTH             : 98
SEQUENCE           : CTGTGTGTATATGTATGTGTGCATGTACATGTGTGTATATGAATATACATATACATACACACATACCCATACAAACATGCATACAAACACACAAAAAT
OVERHANG THRESHOLD : 40%
***********************************************************************************************************************


TARGET
******************************
CATEGORY   : MATURE
ID         : mmu-miR-297c
ACCID      : MI0005492
PARENT     : mmu-mir-297c
CHROMOSOME : 2
START      : 10430643
STOP       : 10430740
OFFSET     : 11..32
SEQUENCE   : ATGTATGTGTGCATGTACATGT
STRAND     : +
******************************


TARGET
******************************
CATEGORY   : MATURESTAR
ID         : mmu-miR-297c*
ACCID      : MI0005492
PARENT     : mmu-mir-297c
CHROMOSOME : 2
START      : 10430643
STOP       : 10430740
OFFSET     : 50..71
SEQUENCE   : TATACATACACACATACCCATA
STRAND     : +
******************************



*** MATURE ***
__________________________________________________________________________________________________
CTGTGTGTATATGTATGTGTGCATGTACATGTGTGTATATGAATATACATATACATACACACATACCCATACAAACATGCATACAAACACACAAAAAT REF                  2                    10430643 - 10430740  
          ATGTATGTGTGCATGTACATGT                                                                   MATURE               2                    10430654 - 10430772  mmu-miR-297c         +                    
                                                 TATACATACACACATACCCATA                            MATURESTAR           2                    10430693 - 10430811  mmu-miR-297c*        +                    
__________________________________________________________________________________________________

                                                                                              -SEQ-              -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
..........ATGTATGTGTGCATGTACATGTGT.................................................................   43082_1_0_0_0_0_0       MATURE            1       100.00            1       100.00            0            0                        24   
                                                                                                                                       ----------                ----------                ----------   
                                                                                                                                                1                         1                         0                                          
                                                                                                                                                                   (100.00)                    (0.00)                                       




*** MATURESTAR ***
__________________________________________________________________________________________________
CTGTGTGTATATGTATGTGTGCATGTACATGTGTGTATATGAATATACATATACATACACACATACCCATACAAACATGCATACAAACACACAAAAAT REF                  2                    10430643 - 10430740  
          ATGTATGTGTGCATGTACATGT                                                                   MATURE               2                    10430654 - 10430772  mmu-miR-297c         +                    
                                                 TATACATACACACATACCCATA                            MATURESTAR           2                    10430693 - 10430811  mmu-miR-297c*        +                    
__________________________________________________________________________________________________

                                                                                              -SEQ-              -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
.................................................TATACATACACACATACCCAT.............................   22831_2_0_0_0_0_0   MATURESTAR            2        25.00            2        50.00            0         0.00                        21   
.............................................TACATATACATACACACATACCCAT.............................   26503_0_0_0_0_0_1   MATURESTAR            1        12.50            0         0.00            1        25.00                        25   
................................................ATATACATACACACATACCCATt............................   23302_0_0_0_0_0_1   MATURESTAR            1        12.50            0         0.00            1        25.00                        22   
.............................................TACATATACATACACACATtCCCAT.............................   32412_0_0_0_0_0_1   MATURESTAR            1        12.50            0         0.00            1        25.00                      19T5   
................................................ATtTACATACACACATACCCAT.............................   17994_1_0_0_0_0_0   MATURESTAR            1        12.50            1        25.00            0         0.00                      2T19   
................................................ATATACATACACACATACCCATAt...........................   22135_1_0_0_0_0_0   MATURESTAR            1        12.50            1        25.00            0         0.00                        23   
.................................................TATACATACACACATACCC...............................   12352_0_0_0_0_0_1   MATURESTAR            1        12.50            0         0.00            1        25.00                        19   
                                                                                                                                       ----------                ----------                ----------   
                                                                                                                                                8                         4                         4                                          
                                                                                                                                                                    (50.00)                   (50.00)                                       




((( SUMMARY )))

          -CAT-          -REST-           -ACT-         -TOTAL-        -TOTAL%-
     ----------      ----------      ----------      ----------      ----------
         MATURE               1               0               1          11.11%
     MATURESTAR               4               4               8          88.89%
                     ----------      ----------      ----------                
                              5               4               9                



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