[BEGIN]
REFERENCE HAIRPIN
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ID : mmu-mir-297c
DESCRIPTION : mmu-mir-297c MI0005492 Mus musculus miR-297c stem-loop
CHROMOSOME : 2
SPAN : 10430643 - 10430740
LENGTH : 98
SEQUENCE : CTGTGTGTATATGTATGTGTGCATGTACATGTGTGTATATGAATATACATATACATACACACATACCCATACAAACATGCATACAAACACACAAAAAT
OVERHANG THRESHOLD : 40%
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TARGET
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CATEGORY : MATURE
ID : mmu-miR-297c
ACCID : MI0005492
PARENT : mmu-mir-297c
CHROMOSOME : 2
START : 10430643
STOP : 10430740
OFFSET : 11..32
SEQUENCE : ATGTATGTGTGCATGTACATGT
STRAND : +
******************************
TARGET
******************************
CATEGORY : MATURESTAR
ID : mmu-miR-297c*
ACCID : MI0005492
PARENT : mmu-mir-297c
CHROMOSOME : 2
START : 10430643
STOP : 10430740
OFFSET : 50..71
SEQUENCE : TATACATACACACATACCCATA
STRAND : +
******************************
*** MATURE ***
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CTGTGTGTATATGTATGTGTGCATGTACATGTGTGTATATGAATATACATATACATACACACATACCCATACAAACATGCATACAAACACACAAAAAT REF 2 10430643 - 10430740
ATGTATGTGTGCATGTACATGT MATURE 2 10430654 - 10430772 mmu-miR-297c +
TATACATACACACATACCCATA MATURESTAR 2 10430693 - 10430811 mmu-miR-297c* +
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-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
..........ATGTATGTGTGCATGTACATGTGT................................................................. 43082_1_0_0_0_0_0 MATURE 1 100.00 1 100.00 0 0 24
---------- ---------- ----------
1 1 0
(100.00) (0.00)
*** MATURESTAR ***
__________________________________________________________________________________________________
CTGTGTGTATATGTATGTGTGCATGTACATGTGTGTATATGAATATACATATACATACACACATACCCATACAAACATGCATACAAACACACAAAAAT REF 2 10430643 - 10430740
ATGTATGTGTGCATGTACATGT MATURE 2 10430654 - 10430772 mmu-miR-297c +
TATACATACACACATACCCATA MATURESTAR 2 10430693 - 10430811 mmu-miR-297c* +
__________________________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
.................................................TATACATACACACATACCCAT............................. 22831_2_0_0_0_0_0 MATURESTAR 2 25.00 2 50.00 0 0.00 21
.............................................TACATATACATACACACATACCCAT............................. 26503_0_0_0_0_0_1 MATURESTAR 1 12.50 0 0.00 1 25.00 25
................................................ATATACATACACACATACCCATt............................ 23302_0_0_0_0_0_1 MATURESTAR 1 12.50 0 0.00 1 25.00 22
.............................................TACATATACATACACACATtCCCAT............................. 32412_0_0_0_0_0_1 MATURESTAR 1 12.50 0 0.00 1 25.00 19T5
................................................ATtTACATACACACATACCCAT............................. 17994_1_0_0_0_0_0 MATURESTAR 1 12.50 1 25.00 0 0.00 2T19
................................................ATATACATACACACATACCCATAt........................... 22135_1_0_0_0_0_0 MATURESTAR 1 12.50 1 25.00 0 0.00 23
.................................................TATACATACACACATACCC............................... 12352_0_0_0_0_0_1 MATURESTAR 1 12.50 0 0.00 1 25.00 19
---------- ---------- ----------
8 4 4
(50.00) (50.00)
((( SUMMARY )))
-CAT- -REST- -ACT- -TOTAL- -TOTAL%-
---------- ---------- ---------- ---------- ----------
MATURE 1 0 1 11.11%
MATURESTAR 4 4 8 88.89%
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5 4 9
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