[BEGIN]

REFERENCE HAIRPIN
****************************************************************************************************
ID                 : mmu-mir-296
DESCRIPTION        : mmu-mir-296 MI0000394 Mus musculus miR-296 stem-loop
CHROMOSOME         : 2
SPAN               : 174092548 - 174092626
LENGTH             : 79
SEQUENCE           : GGGCCTTTCTGGAGGGCCCCCCCTCAATCCTGTTGTGCTCGCTTCAGAGGGTTGGGTGGAGGCTCTCCTGAAGGTGTCC
OVERHANG THRESHOLD : 40%
****************************************************************************************************


TARGET
******************************
CATEGORY   : MATURE-3P
ID         : mmu-miR-296-3p
ACCID      : MI0000394
PARENT     : mmu-mir-296
CHROMOSOME : 2
START      : 174092548
STOP       : 174092626
OFFSET     : 47..68
SEQUENCE   : GAGGGTTGGGTGGAGGCTCTCC
STRAND     : -
******************************


TARGET
******************************
CATEGORY   : MATURE-5P
ID         : mmu-miR-296-5p
ACCID      : MI0000394
PARENT     : mmu-mir-296
CHROMOSOME : 2
START      : 174092548
STOP       : 174092626
OFFSET     : 13..33
SEQUENCE   : AGGGCCCCCCCTCAATCCTGT
STRAND     : -
******************************



*** MATURE-3P ***
_______________________________________________________________________________
GGGCCTTTCTGGAGGGCCCCCCCTCAATCCTGTTGTGCTCGCTTCAGAGGGTTGGGTGGAGGCTCTCCTGAAGGTGTCC REF                  2                    174092548 - 174092626 
                                              GAGGGTTGGGTGGAGGCTCTCC            MATURE-3P            2                    174092595 - 174092694 mmu-miR-296-3p       -                    
            AGGGCCCCCCCTCAATCCTGT                                               MATURE-5P            2                    174092561 - 174092659 mmu-miR-296-5p       -                    
_______________________________________________________________________________

                                                                           -SEQ-                 -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
..............................................GAGGGTTGGGTGGAGGCTCTCC............       3355_2_0_0_0_0_3    MATURE-3P            5        29.41            2        40.00            3        25.00                        22   
..............................................GAGGGTTGGGTGGAGGCTCTCCa...........       5139_0_0_0_0_0_3    MATURE-3P            3        17.65            0         0.00            3        25.00                        22   
...............................................AGGGTTGGGTGGAGGCTCTC.............      26024_0_0_0_0_0_1    MATURE-3P            1         5.88            0         0.00            1         8.33                        20   
..............................................GAGGGTTGGGTGGAGGCTCcCCT...........       9788_0_0_0_0_0_1    MATURE-3P            1         5.88            0         0.00            1         8.33                      19C3   
..............................................GAGGGTTGGGTGGAGGCTCcCCTa..........      32948_1_0_0_0_0_0    MATURE-3P            1         5.88            1        20.00            0         0.00                      19C3   
..............................................GAGGGTTGGGTGGAGGCTCTCCTa..........       7481_1_0_0_0_0_0    MATURE-3P            1         5.88            1        20.00            0         0.00                        23   
..............................................GAGGGTTGGGTGGAGGCTCTCt............      12606_0_0_0_0_0_1    MATURE-3P            1         5.88            0         0.00            1         8.33                        21   
..............................................GAGGGTTGGGTGGAGGCaCTCt............      35245_0_0_0_0_0_1    MATURE-3P            1         5.88            0         0.00            1         8.33                      17A3   
..............................................GAGGGTTGGGTGGAGGCTaTCC............       2587_0_0_0_0_0_1    MATURE-3P            1         5.88            0         0.00            1         8.33                      18A3   
..............................................GAGGGTTGGGTGGAGGCaCTCC............      10076_0_0_0_0_0_1    MATURE-3P            1         5.88            0         0.00            1         8.33                      17A4   
..............................................GAGGGTTGGGTGGAGGCTC...............      29864_1_0_0_0_0_0    MATURE-3P            1         5.88            1        20.00            0         0.00                        19   
                                                                                                                       ----------                ----------                ----------   
                                                                                                                               17                         5                        12                                          
                                                                                                                                                    (29.41)                   (70.59)                                       




*** MATURE-5P ***
_______________________________________________________________________________
GGGCCTTTCTGGAGGGCCCCCCCTCAATCCTGTTGTGCTCGCTTCAGAGGGTTGGGTGGAGGCTCTCCTGAAGGTGTCC REF                  2                    174092548 - 174092626 
                                              GAGGGTTGGGTGGAGGCTCTCC            MATURE-3P            2                    174092595 - 174092694 mmu-miR-296-3p       -                    
            AGGGCCCCCCCTCAATCCTGT                                               MATURE-5P            2                    174092561 - 174092659 mmu-miR-296-5p       -                    
_______________________________________________________________________________

                                                                           -SEQ-              -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
...........GAGGGCtCCCCCTCAATCCTGT...............................................   26072_9_0_0_0_0_4    MATURE-5P           13        17.57            9        19.57            4        14.29                      6T15   
..........GGAGGGCCCCCCCTCAATCCTGT...............................................   33175_7_0_0_0_0_4    MATURE-5P           11        14.86            7        15.22            4        14.29                        23   
...........GAGGGCCCCCCCTCAATCCTGT...............................................   24814_1_0_0_0_0_5    MATURE-5P            6         8.11            1         2.17            5        17.86                        22   
...........GAGGGCCCCCCCTCAATCCaGT...............................................   43823_2_0_0_0_0_2    MATURE-5P            4         5.41            2         4.35            2         7.14                      19A2   
..........GGAGGGCCCCCCCTCAAaCCTGT...............................................   30017_3_0_0_0_0_1    MATURE-5P            4         5.41            3         6.52            1         3.57                      17A5   
...........GAGGGCCCCCCCTCAAaCCTGT...............................................   10228_4_0_0_0_0_0    MATURE-5P            4         5.41            4         8.70            0         0.00                      16A5   
...........GAGGGCCCCCCCTCAATCCTGTa..............................................   34615_2_0_0_0_0_2    MATURE-5P            4         5.41            2         4.35            2         7.14                        22   
...........GAGGGCCCCCCCTCAATCCcGT...............................................   39453_3_0_0_0_0_0    MATURE-5P            3         4.05            3         6.52            0         0.00                      19C2   
..........GGAGGGCtCCCCCTCAATCCTGT...............................................   42066_2_0_0_0_0_0    MATURE-5P            2         2.70            2         4.35            0         0.00                      7T15   
..........GGAGGGCCCCCCCTCAATCCTGTT..............................................   13982_2_0_0_0_0_0    MATURE-5P            2         2.70            2         4.35            0         0.00                        24   
..........GGAGGGCCCCCCCTCAAcCCTGT...............................................   26087_0_0_0_0_0_2    MATURE-5P            2         2.70            0         0.00            2         7.14                      17C5   
..........GGAGGGCCCCCCCTCAATCCTGTa..............................................    5328_2_0_0_0_0_0    MATURE-5P            2         2.70            2         4.35            0         0.00                        23   
..........GGAGGGgCCCCCCTCAATCCTGTTa.............................................   15435_0_0_0_0_0_1    MATURE-5P            1         1.35            0         0.00            1         3.57                      6G17   
..........GGAGGGCCCCCCCTCAATaCTGT...............................................   16075_1_0_0_0_0_0    MATURE-5P            1         1.35            1         2.17            0         0.00                      18A4   
............AGGGCCCCCCCTCAATaCTGT...............................................   42778_0_0_0_0_0_1    MATURE-5P            1         1.35            0         0.00            1         3.57                      16A4   
..........GGAGGGCCCCCCCTCAATCCaGT...............................................   12499_1_0_0_0_0_0    MATURE-5P            1         1.35            1         2.17            0         0.00                      20A2   
...........GAGGGCtCCCCCTCAATCCTGc...............................................   36793_0_0_0_0_0_1    MATURE-5P            1         1.35            0         0.00            1         3.57                      6T14   
..........GGAGGGCCCCCCCTCAATCCTGTTt.............................................   26499_1_0_0_0_0_0    MATURE-5P            1         1.35            1         2.17            0         0.00                        24   
...........GAGGGCCCCCCCTCAATCCTGc...............................................   11561_1_0_0_0_0_0    MATURE-5P            1         1.35            1         2.17            0         0.00                        21   
..........GGAGGGCCCCCCCTCAATCCTGc...............................................   26381_0_0_0_0_0_1    MATURE-5P            1         1.35            0         0.00            1         3.57                        22   
...........GAGGGCCCCCCCTCAATCCTGTTGT............................................   18758_1_0_0_0_0_0    MATURE-5P            1         1.35            1         2.17            0         0.00                        25   
..........GGAGGGCCCCCCCTCAATCCTGTc..............................................   39801_0_0_0_0_0_1    MATURE-5P            1         1.35            0         0.00            1         3.57                        23   
............AGGGCCCCCCCTCAATCCTGTT..............................................   10359_0_0_0_0_0_1    MATURE-5P            1         1.35            0         0.00            1         3.57                        22   
...........GAGGGCCCCCCCTCAAcCCTGT...............................................   15076_0_0_0_0_0_1    MATURE-5P            1         1.35            0         0.00            1         3.57                      16C5   
............AGGGgCCCCCCTCAATCCTGT...............................................   16385_0_0_0_0_0_1    MATURE-5P            1         1.35            0         0.00            1         3.57                      4G16   
............AGGGCCCCCCCTCAATCCcGTa..............................................   38102_1_0_0_0_0_0    MATURE-5P            1         1.35            1         2.17            0         0.00                      18C2   
..........GGAGGGCCCCCCCTCAATtCTGT...............................................   14260_1_0_0_0_0_0    MATURE-5P            1         1.35            1         2.17            0         0.00                      18T4   
..........GGAGGGCCCCCCCTCAAaCCTGc...............................................   28115_1_0_0_0_0_0    MATURE-5P            1         1.35            1         2.17            0         0.00                      17A4   
...........GAGGGCaCCCCCTCAATCCTGT...............................................   36014_1_0_0_0_0_0    MATURE-5P            1         1.35            1         2.17            0         0.00                      6A15   
                                                                                                                    ----------                ----------                ----------   
                                                                                                                            74                        46                        28                                          
                                                                                                                                                 (62.16)                   (37.84)                                       




((( SUMMARY )))

          -CAT-          -REST-           -ACT-         -TOTAL-        -TOTAL%-
     ----------      ----------      ----------      ----------      ----------
      MATURE-3P               5              12              17          18.68%
      MATURE-5P              46              28              74          81.32%
                     ----------      ----------      ----------                
                             51              40              91                



[END]
