[BEGIN]
REFERENCE HAIRPIN
****************************************************************************************************
ID : mmu-mir-296
DESCRIPTION : mmu-mir-296 MI0000394 Mus musculus miR-296 stem-loop
CHROMOSOME : 2
SPAN : 174092548 - 174092626
LENGTH : 79
SEQUENCE : GGGCCTTTCTGGAGGGCCCCCCCTCAATCCTGTTGTGCTCGCTTCAGAGGGTTGGGTGGAGGCTCTCCTGAAGGTGTCC
OVERHANG THRESHOLD : 40%
****************************************************************************************************
TARGET
******************************
CATEGORY : MATURE-3P
ID : mmu-miR-296-3p
ACCID : MI0000394
PARENT : mmu-mir-296
CHROMOSOME : 2
START : 174092548
STOP : 174092626
OFFSET : 47..68
SEQUENCE : GAGGGTTGGGTGGAGGCTCTCC
STRAND : -
******************************
TARGET
******************************
CATEGORY : MATURE-5P
ID : mmu-miR-296-5p
ACCID : MI0000394
PARENT : mmu-mir-296
CHROMOSOME : 2
START : 174092548
STOP : 174092626
OFFSET : 13..33
SEQUENCE : AGGGCCCCCCCTCAATCCTGT
STRAND : -
******************************
*** MATURE-3P ***
_______________________________________________________________________________
GGGCCTTTCTGGAGGGCCCCCCCTCAATCCTGTTGTGCTCGCTTCAGAGGGTTGGGTGGAGGCTCTCCTGAAGGTGTCC REF 2 174092548 - 174092626
GAGGGTTGGGTGGAGGCTCTCC MATURE-3P 2 174092595 - 174092694 mmu-miR-296-3p -
AGGGCCCCCCCTCAATCCTGT MATURE-5P 2 174092561 - 174092659 mmu-miR-296-5p -
_______________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
..............................................GAGGGTTGGGTGGAGGCTCTCC............ 3355_2_0_0_0_0_3 MATURE-3P 5 29.41 2 40.00 3 25.00 22
..............................................GAGGGTTGGGTGGAGGCTCTCCa........... 5139_0_0_0_0_0_3 MATURE-3P 3 17.65 0 0.00 3 25.00 22
...............................................AGGGTTGGGTGGAGGCTCTC............. 26024_0_0_0_0_0_1 MATURE-3P 1 5.88 0 0.00 1 8.33 20
..............................................GAGGGTTGGGTGGAGGCTCcCCT........... 9788_0_0_0_0_0_1 MATURE-3P 1 5.88 0 0.00 1 8.33 19C3
..............................................GAGGGTTGGGTGGAGGCTCcCCTa.......... 32948_1_0_0_0_0_0 MATURE-3P 1 5.88 1 20.00 0 0.00 19C3
..............................................GAGGGTTGGGTGGAGGCTCTCCTa.......... 7481_1_0_0_0_0_0 MATURE-3P 1 5.88 1 20.00 0 0.00 23
..............................................GAGGGTTGGGTGGAGGCTCTCt............ 12606_0_0_0_0_0_1 MATURE-3P 1 5.88 0 0.00 1 8.33 21
..............................................GAGGGTTGGGTGGAGGCaCTCt............ 35245_0_0_0_0_0_1 MATURE-3P 1 5.88 0 0.00 1 8.33 17A3
..............................................GAGGGTTGGGTGGAGGCTaTCC............ 2587_0_0_0_0_0_1 MATURE-3P 1 5.88 0 0.00 1 8.33 18A3
..............................................GAGGGTTGGGTGGAGGCaCTCC............ 10076_0_0_0_0_0_1 MATURE-3P 1 5.88 0 0.00 1 8.33 17A4
..............................................GAGGGTTGGGTGGAGGCTC............... 29864_1_0_0_0_0_0 MATURE-3P 1 5.88 1 20.00 0 0.00 19
---------- ---------- ----------
17 5 12
(29.41) (70.59)
*** MATURE-5P ***
_______________________________________________________________________________
GGGCCTTTCTGGAGGGCCCCCCCTCAATCCTGTTGTGCTCGCTTCAGAGGGTTGGGTGGAGGCTCTCCTGAAGGTGTCC REF 2 174092548 - 174092626
GAGGGTTGGGTGGAGGCTCTCC MATURE-3P 2 174092595 - 174092694 mmu-miR-296-3p -
AGGGCCCCCCCTCAATCCTGT MATURE-5P 2 174092561 - 174092659 mmu-miR-296-5p -
_______________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
...........GAGGGCtCCCCCTCAATCCTGT............................................... 26072_9_0_0_0_0_4 MATURE-5P 13 17.57 9 19.57 4 14.29 6T15
..........GGAGGGCCCCCCCTCAATCCTGT............................................... 33175_7_0_0_0_0_4 MATURE-5P 11 14.86 7 15.22 4 14.29 23
...........GAGGGCCCCCCCTCAATCCTGT............................................... 24814_1_0_0_0_0_5 MATURE-5P 6 8.11 1 2.17 5 17.86 22
...........GAGGGCCCCCCCTCAATCCaGT............................................... 43823_2_0_0_0_0_2 MATURE-5P 4 5.41 2 4.35 2 7.14 19A2
..........GGAGGGCCCCCCCTCAAaCCTGT............................................... 30017_3_0_0_0_0_1 MATURE-5P 4 5.41 3 6.52 1 3.57 17A5
...........GAGGGCCCCCCCTCAAaCCTGT............................................... 10228_4_0_0_0_0_0 MATURE-5P 4 5.41 4 8.70 0 0.00 16A5
...........GAGGGCCCCCCCTCAATCCTGTa.............................................. 34615_2_0_0_0_0_2 MATURE-5P 4 5.41 2 4.35 2 7.14 22
...........GAGGGCCCCCCCTCAATCCcGT............................................... 39453_3_0_0_0_0_0 MATURE-5P 3 4.05 3 6.52 0 0.00 19C2
..........GGAGGGCtCCCCCTCAATCCTGT............................................... 42066_2_0_0_0_0_0 MATURE-5P 2 2.70 2 4.35 0 0.00 7T15
..........GGAGGGCCCCCCCTCAATCCTGTT.............................................. 13982_2_0_0_0_0_0 MATURE-5P 2 2.70 2 4.35 0 0.00 24
..........GGAGGGCCCCCCCTCAAcCCTGT............................................... 26087_0_0_0_0_0_2 MATURE-5P 2 2.70 0 0.00 2 7.14 17C5
..........GGAGGGCCCCCCCTCAATCCTGTa.............................................. 5328_2_0_0_0_0_0 MATURE-5P 2 2.70 2 4.35 0 0.00 23
..........GGAGGGgCCCCCCTCAATCCTGTTa............................................. 15435_0_0_0_0_0_1 MATURE-5P 1 1.35 0 0.00 1 3.57 6G17
..........GGAGGGCCCCCCCTCAATaCTGT............................................... 16075_1_0_0_0_0_0 MATURE-5P 1 1.35 1 2.17 0 0.00 18A4
............AGGGCCCCCCCTCAATaCTGT............................................... 42778_0_0_0_0_0_1 MATURE-5P 1 1.35 0 0.00 1 3.57 16A4
..........GGAGGGCCCCCCCTCAATCCaGT............................................... 12499_1_0_0_0_0_0 MATURE-5P 1 1.35 1 2.17 0 0.00 20A2
...........GAGGGCtCCCCCTCAATCCTGc............................................... 36793_0_0_0_0_0_1 MATURE-5P 1 1.35 0 0.00 1 3.57 6T14
..........GGAGGGCCCCCCCTCAATCCTGTTt............................................. 26499_1_0_0_0_0_0 MATURE-5P 1 1.35 1 2.17 0 0.00 24
...........GAGGGCCCCCCCTCAATCCTGc............................................... 11561_1_0_0_0_0_0 MATURE-5P 1 1.35 1 2.17 0 0.00 21
..........GGAGGGCCCCCCCTCAATCCTGc............................................... 26381_0_0_0_0_0_1 MATURE-5P 1 1.35 0 0.00 1 3.57 22
...........GAGGGCCCCCCCTCAATCCTGTTGT............................................ 18758_1_0_0_0_0_0 MATURE-5P 1 1.35 1 2.17 0 0.00 25
..........GGAGGGCCCCCCCTCAATCCTGTc.............................................. 39801_0_0_0_0_0_1 MATURE-5P 1 1.35 0 0.00 1 3.57 23
............AGGGCCCCCCCTCAATCCTGTT.............................................. 10359_0_0_0_0_0_1 MATURE-5P 1 1.35 0 0.00 1 3.57 22
...........GAGGGCCCCCCCTCAAcCCTGT............................................... 15076_0_0_0_0_0_1 MATURE-5P 1 1.35 0 0.00 1 3.57 16C5
............AGGGgCCCCCCTCAATCCTGT............................................... 16385_0_0_0_0_0_1 MATURE-5P 1 1.35 0 0.00 1 3.57 4G16
............AGGGCCCCCCCTCAATCCcGTa.............................................. 38102_1_0_0_0_0_0 MATURE-5P 1 1.35 1 2.17 0 0.00 18C2
..........GGAGGGCCCCCCCTCAATtCTGT............................................... 14260_1_0_0_0_0_0 MATURE-5P 1 1.35 1 2.17 0 0.00 18T4
..........GGAGGGCCCCCCCTCAAaCCTGc............................................... 28115_1_0_0_0_0_0 MATURE-5P 1 1.35 1 2.17 0 0.00 17A4
...........GAGGGCaCCCCCTCAATCCTGT............................................... 36014_1_0_0_0_0_0 MATURE-5P 1 1.35 1 2.17 0 0.00 6A15
---------- ---------- ----------
74 46 28
(62.16) (37.84)
((( SUMMARY )))
-CAT- -REST- -ACT- -TOTAL- -TOTAL%-
---------- ---------- ---------- ---------- ----------
MATURE-3P 5 12 17 18.68%
MATURE-5P 46 28 74 81.32%
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51 40 91
[END]