[BEGIN]
REFERENCE HAIRPIN
***********************************************************************************************************
ID : mmu-mir-28
DESCRIPTION : mmu-mir-28 MI0000690 Mus musculus miR-28 stem-loop
CHROMOSOME : 16
SPAN : 24827941 - 24828026
LENGTH : 86
SEQUENCE : GGTCCCTACCTTCAAGGAGCTCACAGTCTATTGAGTTGCCTTTCTGATTCTCCCACTAGATTGTGAGCTGCTGGAGGGCAGGCACT
OVERHANG THRESHOLD : 40%
***********************************************************************************************************
TARGET
******************************
CATEGORY : MATURE
ID : mmu-miR-28
ACCID : MI0000690
PARENT : mmu-mir-28
CHROMOSOME : 16
START : 24827941
STOP : 24828026
OFFSET : 14..35
SEQUENCE : AAGGAGCTCACAGTCTATTGAG
STRAND : +
******************************
TARGET
******************************
CATEGORY : MATURESTAR
ID : mmu-miR-28*
ACCID : MI0000690
PARENT : mmu-mir-28
CHROMOSOME : 16
START : 24827941
STOP : 24828026
OFFSET : 54..75
SEQUENCE : CACTAGATTGTGAGCTGCTGGA
STRAND : +
******************************
*** MATURE ***
______________________________________________________________________________________
GGTCCCTACCTTCAAGGAGCTCACAGTCTATTGAGTTGCCTTTCTGATTCTCCCACTAGATTGTGAGCTGCTGGAGGGCAGGCACT REF 16 24827941 - 24828026
AAGGAGCTCACAGTCTATTGAG MATURE 16 24827955 - 24828061 mmu-miR-28 +
CACTAGATTGTGAGCTGCTGGA MATURESTAR 16 24827995 - 24828101 mmu-miR-28* +
______________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
.............AAGGAGCTCACAGTCTATTGA..................................................... 36927_26_0_0_0_0_73 MATURE 99 25.92 26 16.67 73 32.30 21
.............AAGGAGCTCACAGTCTATTG...................................................... 30562_40_0_0_0_0_33 MATURE 73 19.11 40 25.64 33 14.60 20
.............AAGGAGCTCACAGTCaATTGA..................................................... 32092_14_0_0_0_0_17 MATURE 31 8.12 14 8.97 17 7.52 15A5
.............AAGGAGCTCACAGTCcATTGA..................................................... 43039_10_0_0_0_0_14 MATURE 24 6.28 10 6.41 14 6.19 15C5
.............AAGGAGCTCACAGTCTATTa...................................................... 37842_14_0_0_0_0_9 MATURE 23 6.02 14 8.97 9 3.98 19
.............AAGGAGCTCACAGTCTATTGAa.................................................... 43976_5_0_0_0_0_15 MATURE 20 5.24 5 3.21 15 6.64 21
.............AAGGAGCTCACAGTCgATTGA..................................................... 40788_7_0_0_0_0_13 MATURE 20 5.24 7 4.49 13 5.75 15G5
.............AAGGAGCTCACAGTCTATTGAG.................................................... 32658_6_0_0_0_0_9 MATURE 15 3.93 6 3.85 9 3.98 22
.............AAGGAGCTCACAGTCTATT....................................................... 24448_5_0_0_0_0_7 MATURE 12 3.14 5 3.21 7 3.10 19
.............AAGGAGCTCACAGTCTAcTGA..................................................... 43425_2_0_0_0_0_7 MATURE 9 2.36 2 1.28 7 3.10 17C3
.............AAGGAGCTCACAGTCTATTGAGT................................................... 29692_4_0_0_0_0_4 MATURE 8 2.09 4 2.56 4 1.77 23
.............AAGGAGCTCACAGTCTcTTGAa.................................................... 41446_3_0_0_0_0_2 MATURE 5 1.31 3 1.92 2 0.88 16C4
.............AAGGAGCTCACAGTCTATTGAGa................................................... 43423_0_0_0_0_0_4 MATURE 4 1.05 0 0.00 4 1.77 22
.............AAGGAGCTCACAGTCTtTTGA..................................................... 20923_1_0_0_0_0_2 MATURE 3 0.79 1 0.64 2 0.88 16T4
.............AAGGAGCTCACAGTCTATaGA..................................................... 40881_1_0_0_0_0_2 MATURE 3 0.79 1 0.64 2 0.88 18A2
.............AAGGAGCTCACAGTCTATTaAG.................................................... 33218_1_0_0_0_0_2 MATURE 3 0.79 1 0.64 2 0.88 19A2
.............AAGGAGCTCACAGTCTATTGAc.................................................... 41833_2_0_0_0_0_1 MATURE 3 0.79 2 1.28 1 0.44 21
.............AAGGAGCTCACAGTCTATTGt..................................................... 22244_2_0_0_0_0_1 MATURE 3 0.79 2 1.28 1 0.44 20
.............AAGGAGCTCACAGTCTcTTGA..................................................... 7087_1_0_0_0_0_2 MATURE 3 0.79 1 0.64 2 0.88 16C4
.............AAGGAGCTCACAGTCTATTt...................................................... 14426_2_0_0_0_0_0 MATURE 2 0.52 2 1.28 0 0.00 19
.............AAGGAGCTCACAGTCTATaGAGa................................................... 8101_1_0_0_0_0_1 MATURE 2 0.52 1 0.64 1 0.44 18A3
.............AAGGAGCTCACAGTCTATTGAaTT.................................................. 1786_2_0_0_0_0_0 MATURE 2 0.52 2 1.28 0 0.00 21A2
.............AAGGAGCTCACAGTCTATTGtGT................................................... 29187_0_0_0_0_0_2 MATURE 2 0.52 0 0.00 2 0.88 20T2
.............AAGGAGCTCACAGTCTATTaAGa................................................... 19303_0_0_0_0_0_1 MATURE 1 0.26 0 0.00 1 0.44 19A2
.............AAGGAGCTCACAGTCTAcTGAG.................................................... 22791_0_0_0_0_0_1 MATURE 1 0.26 0 0.00 1 0.44 17C4
.............AAGGAGCTCACAGTCTATgGAGa................................................... 3462_0_0_0_0_0_1 MATURE 1 0.26 0 0.00 1 0.44 18G3
.............AAGGAGCTCACAGTCTATcGAa.................................................... 41411_0_0_0_0_0_1 MATURE 1 0.26 0 0.00 1 0.44 18C2
.............AAGGAGCTCACAGTCTATTcAG.................................................... 523_1_0_0_0_0_0 MATURE 1 0.26 1 0.64 0 0.00 19C2
.............AAGGAGCTCACAGTCTATaGAG.................................................... 32955_0_0_0_0_0_1 MATURE 1 0.26 0 0.00 1 0.44 18A3
.............AAGGAGCTCACAGTCTATcGAt.................................................... 6406_1_0_0_0_0_0 MATURE 1 0.26 1 0.64 0 0.00 18C2
............CAAGGAGCTCACAGTCTATTt...................................................... 5723_0_0_0_0_0_1 MATURE 1 0.26 0 0.00 1 0.44 20
.............AAGGAGCTCACAGTCTATTGg..................................................... 13725_1_0_0_0_0_0 MATURE 1 0.26 1 0.64 0 0.00 20
.............AAGGAGCTCACAGTCTATTc...................................................... 25406_1_0_0_0_0_0 MATURE 1 0.26 1 0.64 0 0.00 19
..............AGGAGCTCACAGTCTATTG...................................................... 15636_1_0_0_0_0_0 MATURE 1 0.26 1 0.64 0 0.00 19
.............AAGGAGCTCACAGTCTATaGAGTT.................................................. 4178_1_0_0_0_0_0 MATURE 1 0.26 1 0.64 0 0.00 18A5
.............AAGGAGCTCACAGTCTATTGAGTa.................................................. 27416_1_0_0_0_0_0 MATURE 1 0.26 1 0.64 0 0.00 23
---------- ---------- ----------
382 156 226
(40.84) (59.16)
*** MATURESTAR ***
______________________________________________________________________________________
GGTCCCTACCTTCAAGGAGCTCACAGTCTATTGAGTTGCCTTTCTGATTCTCCCACTAGATTGTGAGCTGCTGGAGGGCAGGCACT REF 16 24827941 - 24828026
AAGGAGCTCACAGTCTATTGAG MATURE 16 24827955 - 24828061 mmu-miR-28 +
CACTAGATTGTGAGCTGCTGGA MATURESTAR 16 24827995 - 24828101 mmu-miR-28* +
______________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
.....................................................CACTAGATTGTGAGCTGCTGGAt........... 20466_4_0_0_0_0_3 MATURESTAR 7 18.42 4 21.05 3 15.79 22
.....................................................CACTAGATTGTGAGCTaCTGGA............ 39894_0_0_0_0_0_3 MATURESTAR 3 7.89 0 0.00 3 15.79 16A5
.....................................................CACTAGATTGTGAGCTGCTGGAa........... 41290_0_0_0_0_0_3 MATURESTAR 3 7.89 0 0.00 3 15.79 22
.....................................................CACTAGATTGTGAGCTGCTaGAa........... 37692_2_0_0_0_0_1 MATURESTAR 3 7.89 2 10.53 1 5.26 19A2
..................................................TCgCACTAGATTGTGAGCTGCTGGA............ 7134_1_0_0_0_0_1 MATURESTAR 2 5.26 1 5.26 1 5.26 2G22
......................................................ACTAGATTGTGAGCTGCTGGAa........... 41688_2_0_0_0_0_0 MATURESTAR 2 5.26 2 10.53 0 0.00 21
.....................................................CACTAGATTGTGAGCTGCaGGAa........... 4661_1_0_0_0_0_1 MATURESTAR 2 5.26 1 5.26 1 5.26 18A3
......................................................ACTAGATTGTGAGCTGCaGGAt........... 43690_2_0_0_0_0_0 MATURESTAR 2 5.26 2 10.53 0 0.00 17A3
.....................................................CACTAGATTGTGAGCTGCcGGA............ 7654_0_0_0_0_0_1 MATURESTAR 1 2.63 0 0.00 1 5.26 18C3
.......................................................CTAGATTGTGAGCTGCcGGAGt.......... 21596_1_0_0_0_0_0 MATURESTAR 1 2.63 1 5.26 0 0.00 16C4
.....................................................CACTAGATTGTGAGCTGaTGGAa........... 2726_0_0_0_0_0_1 MATURESTAR 1 2.63 0 0.00 1 5.26 17A4
......................................................ACTAGATTGTGAGCTGCTaGAt........... 30394_0_0_0_0_0_1 MATURESTAR 1 2.63 0 0.00 1 5.26 18A2
......................................................ACTAGATTGTGAGCTGCTaGAa........... 14051_1_0_0_0_0_0 MATURESTAR 1 2.63 1 5.26 0 0.00 18A2
......................................................ACTAGATTGTGAGCTGCaGGAa........... 33341_1_0_0_0_0_0 MATURESTAR 1 2.63 1 5.26 0 0.00 17A3
......................................................ACTAGATTGTGAGCTGCTGGAGt.......... 10543_0_0_0_0_0_1 MATURESTAR 1 2.63 0 0.00 1 5.26 22
.....................................................CACTAGATTGTGAGCTGCTaGA............ 29249_1_0_0_0_0_0 MATURESTAR 1 2.63 1 5.26 0 0.00 19A2
.....................................................CACTAGATTGTGAGCTGCTGGA............ 39320_0_0_0_0_0_1 MATURESTAR 1 2.63 0 0.00 1 5.26 22
.....................................................CACTAGATTGTGAGCTcCTGGA............ 44113_0_0_0_0_0_1 MATURESTAR 1 2.63 0 0.00 1 5.26 16C5
......................................................ACTAGATTGTGAGCTGCcGGAa........... 10224_1_0_0_0_0_0 MATURESTAR 1 2.63 1 5.26 0 0.00 17C3
.....................................................CACTAGATTGTGAGCTGCTG.............. 25527_1_0_0_0_0_0 MATURESTAR 1 2.63 1 5.26 0 0.00 20
.......................................................CTAGATTGTGAGCTGCTGGAGt.......... 30570_0_0_0_0_0_1 MATURESTAR 1 2.63 0 0.00 1 5.26 21
.......................................................CTAGATTGTGAGCTGCTGGAGa.......... 15230_1_0_0_0_0_0 MATURESTAR 1 2.63 1 5.26 0 0.00 21
---------- ---------- ----------
38 19 19
(50.00) (50.00)
((( SUMMARY )))
-CAT- -REST- -ACT- -TOTAL- -TOTAL%-
---------- ---------- ---------- ---------- ----------
MATURE 156 226 382 90.95%
MATURESTAR 19 19 38 9.05%
---------- ---------- ----------
175 245 420
[END]