[BEGIN]

REFERENCE HAIRPIN
**********************************************************************************************
ID                 : mmu-mir-27b
DESCRIPTION        : mmu-mir-27b MI0000142 Mus musculus miR-27b stem-loop
CHROMOSOME         : 13
SPAN               : 63402020 - 63402092
LENGTH             : 73
SEQUENCE           : AGGTGCAGAGCTTAGCTGATTGGTGAACAGTGATTGGTTTCCGCTTTGTTCACAGTGGCTAAGTTCTGCACCT
OVERHANG THRESHOLD : 40%
**********************************************************************************************


TARGET
******************************
CATEGORY   : MATURE
ID         : mmu-miR-27b
ACCID      : MI0000142
PARENT     : mmu-mir-27b
CHROMOSOME : 13
START      : 63402020
STOP       : 63402092
OFFSET     : 49..69
SEQUENCE   : TTCACAGTGGCTAAGTTCTGC
STRAND     : +
******************************


TARGET
******************************
CATEGORY   : MATURESTAR
ID         : mmu-miR-27b*
ACCID      : MI0000142
PARENT     : mmu-mir-27b
CHROMOSOME : 13
START      : 63402020
STOP       : 63402092
OFFSET     : 7..28
SEQUENCE   : AGAGCTTAGCTGATTGGTGAAC
STRAND     : +
******************************



*** MATURE ***
_________________________________________________________________________
AGGTGCAGAGCTTAGCTGATTGGTGAACAGTGATTGGTTTCCGCTTTGTTCACAGTGGCTAAGTTCTGCACCT REF                  13                   63402020 - 63402092  
                                                TTCACAGTGGCTAAGTTCTGC     MATURE               13                   63402069 - 63402161  mmu-miR-27b          +                    
      AGAGCTTAGCTGATTGGTGAAC                                              MATURESTAR           13                   63402027 - 63402120  mmu-miR-27b*         +                    
_________________________________________________________________________

                                                                     -SEQ-                -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
...............................................GTTCACAGTGGCTAAGTTCTGCAt...   41666_29_0_0_0_0_39       MATURE           68        15.74           29        15.59           39        15.85                        23   
...............................................GTTCACAGTGGCTAAGTTCTGCAa...   28682_21_0_0_0_0_35       MATURE           56        12.96           21        11.29           35        14.23                        23   
...............................................GTTCACAGTGGCTAAGTTCTaCAt...   25986_25_0_0_0_0_20       MATURE           45        10.42           25        13.44           20         8.13                      20A2   
..............................................TGTTCACAGTGGCTAAGTTCTGCAt...   29441_11_0_0_0_0_22       MATURE           33         7.64           11         5.91           22         8.94                        24   
...............................................GTTCACAGTGGCTAAGTTCTGCA....   39358_11_0_0_0_0_14       MATURE           25         5.79           11         5.91           14         5.69                        23   
............................................TTaGTTCACAGTGGCTAAGTTCTGt.....     11946_9_0_0_0_0_9       MATURE           18         4.17            9         4.84            9         3.66                      2A21   
...............................................GTTCACAGTGGCTAAGTTCTaCAa...     23386_5_0_0_0_0_7       MATURE           12         2.78            5         2.69            7         2.85                      20A2   
...........................................CTTaGTTCACAGTGGCTAAGTTCT.......     20360_4_0_0_0_0_6       MATURE           10         2.31            4         2.15            6         2.44                      3A20   
..............................................TGTTCACAGTGGCTAAGTTCTaCAt...     39407_3_0_0_0_0_5       MATURE            8         1.85            3         1.61            5         2.03                      21A2   
...............................................GTTCACAGTGGCTAAGTTCTaCA....     39702_4_0_0_0_0_4       MATURE            8         1.85            4         2.15            4         1.63                      20A2   
...........................................CTTaGTTCACAGTGGCTAAGTTCTG......     12255_2_0_0_0_0_5       MATURE            7         1.62            2         1.08            5         2.03                      3A21   
............................................TTaGTTCACAGTGGCTAAGTTCTGa.....     38875_5_0_0_0_0_2       MATURE            7         1.62            5         2.69            2         0.81                      2A21   
............................................TTaGTTCACAGTGGCTAAGTTCTGC.....     26794_4_0_0_0_0_3       MATURE            7         1.62            4         2.15            3         1.22                      2A22   
..............................................TGTTCACAGTGGCTAAGTTCTGCA....     23433_1_0_0_0_0_5       MATURE            6         1.39            1         0.54            5         2.03                        24   
..............................................TGTTCACAGTGGCTAAGTTCTGCAa...     17337_1_0_0_0_0_5       MATURE            6         1.39            1         0.54            5         2.03                        24   
...............................................GTTCACAGTGGCTAAGTTaTGCA....     11035_3_0_0_0_0_2       MATURE            5         1.16            3         1.61            2         0.81                      18A4   
...............................................GTTCACAGTGGCTAAGTTCTGCACt..     40613_4_0_0_0_0_1       MATURE            5         1.16            4         2.15            1         0.41                        24   
................................................TTCACAGTGGCTAAGTTCTGCAa...     15319_4_0_0_0_0_1       MATURE            5         1.16            4         2.15            1         0.41                        22   
..............................................TGTTCACAGTGGCTAAGTaCTGCA....     30831_1_0_0_0_0_3       MATURE            4         0.93            1         0.54            3         1.22                      18A5   
..............................................TGTTCACAGTGGCTAAGTTCTGCt....     16272_1_0_0_0_0_3       MATURE            4         0.93            1         0.54            3         1.22                        23   
...............................................GTTCACAGTGGCTAAGTTCTGCt....     43515_1_0_0_0_0_3       MATURE            4         0.93            1         0.54            3         1.22                        22   
..............................................TGTTCACAGTGGCTAAGTTCTGCAg...     24253_0_0_0_0_0_4       MATURE            4         0.93            0         0.00            4         1.63                        24   
...............................................GTTCACAGTGGCTAAGTTCTcCA....      4869_2_0_0_0_0_1       MATURE            3         0.69            2         1.08            1         0.41                      20C2   
...............................................GTTCACAGTGGCTAAGTTCTGt.....     22909_1_0_0_0_0_2       MATURE            3         0.69            1         0.54            2         0.81                        21   
...............................................GTTCACAGTGGCTAAGTaCTGCA....     25097_1_0_0_0_0_2       MATURE            3         0.69            1         0.54            2         0.81                      17A5   
..............................................TGTTCACAGTGGCTAAGTTCTGCg....     12869_1_0_0_0_0_2       MATURE            3         0.69            1         0.54            2         0.81                        23   
...............................................GTTCACAGTGGCTAAGTTCTtCAt...     38270_2_0_0_0_0_1       MATURE            3         0.69            2         1.08            1         0.41                      20T2   
................................................TTCACAGTGGCTAAGTTCTaCAa...     41023_2_0_0_0_0_1       MATURE            3         0.69            2         1.08            1         0.41                      19A2   
...............................................GTTCACAGTGGCTAAGTTCTaCACt..     28943_2_0_0_0_0_0       MATURE            2         0.46            2         1.08            0         0.00                      20A3   
...............................................GTTCACAGTGGCTAAGTTCTGCg....     19797_1_0_0_0_0_1       MATURE            2         0.46            1         0.54            1         0.41                        22   
...........................................CTTaGTTCACAGTGGCTAAGTTCTa......      3094_1_0_0_0_0_1       MATURE            2         0.46            1         0.54            1         0.41                      3A20   
...............................................GTTCACAGTGGCTAAGTTCTa......     17689_2_0_0_0_0_0       MATURE            2         0.46            2         1.08            0         0.00                        20   
...............................................GTTCACAGTGGCTAAGTTCTGCc....      5892_1_0_0_0_0_1       MATURE            2         0.46            1         0.54            1         0.41                        22   
...............................................GTTCACAGTGGCTAAGTTCTGCAg...     15839_0_0_0_0_0_2       MATURE            2         0.46            0         0.00            2         0.81                        23   
...............................................GTTCACAGTGGCTAAGTTCTtCACt..      1691_0_0_0_0_0_2       MATURE            2         0.46            0         0.00            2         0.81                      20T3   
..............................................TGTTCACAGTGGCTAAGTTCTGaAC...     25909_0_0_0_0_0_2       MATURE            2         0.46            0         0.00            2         0.81                      22A2   
...............................................GTTtACAGTGGCTAAGTTCTGCAt...      1257_2_0_0_0_0_0       MATURE            2         0.46            2         1.08            0         0.00                      3T19   
..............................................TGTTCcCAGTGGCTAAGTTCTGCAa...     19788_0_0_0_0_0_2       MATURE            2         0.46            0         0.00            2         0.81                      5C18   
..............................................TGTTCACAGTGGCTAAGTTCTaCAa...     33590_0_0_0_0_0_2       MATURE            2         0.46            0         0.00            2         0.81                      21A2   
...............................................GTTCACAGTGGCTAAGTcCTGCA....     16763_2_0_0_0_0_0       MATURE            2         0.46            2         1.08            0         0.00                      17C5   
.................................................TCACAGTGGCTAAGTTCTGt.....     37703_0_0_0_0_0_2       MATURE            2         0.46            0         0.00            2         0.81                        19   
...............................................GTTCACAGTGGCTAAGTTCTcCAt...      8481_2_0_0_0_0_0       MATURE            2         0.46            2         1.08            0         0.00                      20C2   
..............................................TGTTCACAGTGGCTAAGTTCTGt.....      2558_1_0_0_0_0_1       MATURE            2         0.46            1         0.54            1         0.41                        22   
...............................................GTTCACAGTGGCTAAGTTCTtCA....     39967_0_0_0_0_0_1       MATURE            1         0.23            0         0.00            1         0.41                      20T2   
................................................TTaACAGTGGCTAAGTTCTGCAa...     20196_1_0_0_0_0_0       MATURE            1         0.23            1         0.54            0         0.00                      2A19   
...............................................GTTCACAGTGGCTAAGTTCTGa.....     17628_1_0_0_0_0_0       MATURE            1         0.23            1         0.54            0         0.00                        21   
...............................................GTTCACAGTGGCTAAGTTCTcCAa...     37767_0_0_0_0_0_1       MATURE            1         0.23            0         0.00            1         0.41                      20C2   
...............................................GTTCACAGTGGCTAAGTTCTGCAC...     32961_1_0_0_0_0_0       MATURE            1         0.23            1         0.54            0         0.00                        24   
...............................................GTTCcCAGTGGCTAAGTTCTGCAa...      9345_0_0_0_0_0_1       MATURE            1         0.23            0         0.00            1         0.41                      4C18   
................................................TTCACAGTGGCTAAGTTCTGCAgCT.     15473_1_0_0_0_0_0       MATURE            1         0.23            1         0.54            0         0.00                      22G2   
...............................................GTTCACAGTGGCTAAaTTCTG......     34026_0_0_0_0_0_1       MATURE            1         0.23            0         0.00            1         0.41                      15A5   
...............................................GTTCACAGTGGCTAAGTTCTaCAC...     41569_0_0_0_0_0_1       MATURE            1         0.23            0         0.00            1         0.41                      20A3   
...............................................GTTCACAGTGGCTAAGTgCTGCA....      7988_0_0_0_0_0_1       MATURE            1         0.23            0         0.00            1         0.41                      17G5   
...........................................CTTaGTTCACAGTGGCTAAGTTCTt......     27194_1_0_0_0_0_0       MATURE            1         0.23            1         0.54            0         0.00                      3A20   
...............................................GTTCACAGTGGCTAAGTTCTGCACC..     25066_1_0_0_0_0_0       MATURE            1         0.23            1         0.54            0         0.00                        25   
.................................................TCACAGTGGCTAAGTTCTGCAt...     23312_0_0_0_0_0_1       MATURE            1         0.23            0         0.00            1         0.41                        21   
..................................................CACAGTGGCTAAGTTCTGCAt...     38011_1_0_0_0_0_0       MATURE            1         0.23            1         0.54            0         0.00                        20   
..............................................TGTTCACAGTGGCTAAGTTaTGCA....     34651_1_0_0_0_0_0       MATURE            1         0.23            1         0.54            0         0.00                      19A4   
...........................................CTTTGTTCACAGTGGCTAAGTTCTG......       212_0_0_0_0_0_1       MATURE            1         0.23            0         0.00            1         0.41                        25   
...........................................CTgTGTTCACAGTGGCTAAGTTCTG......     27954_0_0_0_0_0_1       MATURE            1         0.23            0         0.00            1         0.41                      2G22   
...............................................GTTCACAGTGGCTAAGTTCaGCACC..     10411_0_0_0_0_0_1       MATURE            1         0.23            0         0.00            1         0.41                      19A5   
...............................................GTTCACAGTGGCTAAGTTtTGCA....     18995_1_0_0_0_0_0       MATURE            1         0.23            1         0.54            0         0.00                      18T4   
...........................................CTaTGTTCACAGTGGCTAAGTTCTG......      7823_0_0_0_0_0_1       MATURE            1         0.23            0         0.00            1         0.41                      2A22   
..............................................TGTTCACAGTGGCTAAGTgCTGCA....      3046_1_0_0_0_0_0       MATURE            1         0.23            1         0.54            0         0.00                      18G5   
..............................................TGTTCACAGTGGCTAAGTTCTGtAC...      9539_0_0_0_0_0_1       MATURE            1         0.23            0         0.00            1         0.41                      22T2   
................................................TTCACAGTGGCTAAGTTCTaCAt...     23429_0_0_0_0_0_1       MATURE            1         0.23            0         0.00            1         0.41                      19A2   
...............................................GTTCACAGTGGCTAAGTTCTcCAg...     29415_1_0_0_0_0_0       MATURE            1         0.23            1         0.54            0         0.00                      20C2   
..............................................TGTTCACAGTGGCTAAGTTCTaCAg...     26889_1_0_0_0_0_0       MATURE            1         0.23            1         0.54            0         0.00                      21A2   
..............................................TGTTCACAGTGGCTAAGTTCTaCA....     31251_0_0_0_0_0_1       MATURE            1         0.23            0         0.00            1         0.41                      21A2   
............................................TTTGTTCACAGTGGCTAAGTTtTGt.....     15327_1_0_0_0_0_0       MATURE            1         0.23            1         0.54            0         0.00                      21T2   
...............................................GTTCACAGTGGCTAAGTTCTcCACa..     43227_0_0_0_0_0_1       MATURE            1         0.23            0         0.00            1         0.41                      20C3   
...............................................GTTCACAGTGGCTAAGcTCTGC.....      9001_0_0_0_0_0_1       MATURE            1         0.23            0         0.00            1         0.41                      16C5   
................................................TTCACAGTGGCTAAGTTCTGCAt...      1474_0_0_0_0_0_1       MATURE            1         0.23            0         0.00            1         0.41                        22   
..................................................CACAGTGGCTAAGTTCTGCAa...     22416_0_0_0_0_0_1       MATURE            1         0.23            0         0.00            1         0.41                        20   
...............................................GTTCACAGTGGCTAAGTTCTGaAC...       970_0_0_0_0_0_1       MATURE            1         0.23            0         0.00            1         0.41                      21A2   
..............................................TGTTCACAGTGGCTAAGTTCTGC.....     42222_0_0_0_0_0_1       MATURE            1         0.23            0         0.00            1         0.41                        23   
...............................................GTTCACAGTGGCTAAGTTCTaCACa..     23498_0_0_0_0_0_1       MATURE            1         0.23            0         0.00            1         0.41                      20A3   
................................................TTCACAGTGGCTAAGTTCTGCAg...     34576_1_0_0_0_0_0       MATURE            1         0.23            1         0.54            0         0.00                        22   
...........................................CTTTGTTCACAGTGGCTAAGT..........     10477_0_0_0_0_0_1       MATURE            1         0.23            0         0.00            1         0.41                        21   
...............................................GTTCACAGTGGCTAAGTTCaGCAC...     27677_0_0_0_0_0_1       MATURE            1         0.23            0         0.00            1         0.41                      19A4   
                                                                                                                ----------                ----------                ----------   
                                                                                                                       432                       186                       246                                          
                                                                                                                                             (43.06)                   (56.94)                                       




*** MATURESTAR ***
_________________________________________________________________________
AGGTGCAGAGCTTAGCTGATTGGTGAACAGTGATTGGTTTCCGCTTTGTTCACAGTGGCTAAGTTCTGCACCT REF                  13                   63402020 - 63402092  
                                                TTCACAGTGGCTAAGTTCTGC     MATURE               13                   63402069 - 63402161  mmu-miR-27b          +                    
      AGAGCTTAGCTGATTGGTGAAC                                              MATURESTAR           13                   63402027 - 63402120  mmu-miR-27b*         +                    
_________________________________________________________________________

                                                                     -SEQ-              -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
....GCAGAGCTTAGCTGATTGGTGAACA.............................................   44297_0_0_0_0_0_1   MATURESTAR            1        14.29            0         0.00            1        20.00                        25   
......AGAGCTTAGCTGATTGGTGAAa..............................................    9789_1_0_0_0_0_0   MATURESTAR            1        14.29            1        50.00            0         0.00                        21   
......AGAGCTTAGCTGATTGGTGAtCAGT...........................................   35302_0_0_0_0_0_1   MATURESTAR            1        14.29            0         0.00            1        20.00                      20T4   
......AGAGCTTAGCTGATTGGTGAtCA.............................................   44212_1_0_0_0_0_0   MATURESTAR            1        14.29            1        50.00            0         0.00                      20T2   
......AGAGCTTAGCTGATTGGTGgACA.............................................   33090_0_0_0_0_0_1   MATURESTAR            1        14.29            0         0.00            1        20.00                      19G3   
......AGAGCTTAGCTGATTGGTGAAt..............................................   33915_0_0_0_0_0_1   MATURESTAR            1        14.29            0         0.00            1        20.00                        21   
......AGAGCTTAGCTGATTGGTGAgCAGT...........................................   22323_0_0_0_0_0_1   MATURESTAR            1        14.29            0         0.00            1        20.00                      20G4   
                                                                                                              ----------                ----------                ----------   
                                                                                                                       7                         2                         5                                          
                                                                                                                                           (28.57)                   (71.43)                                       




((( SUMMARY )))

          -CAT-          -REST-           -ACT-         -TOTAL-        -TOTAL%-
     ----------      ----------      ----------      ----------      ----------
         MATURE             186             246             432          98.41%
     MATURESTAR               2               5               7           1.59%
                     ----------      ----------      ----------                
                            188             251             439                



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