[BEGIN]
REFERENCE HAIRPIN
*********************************************************************************************************
ID : mmu-mir-25
DESCRIPTION : mmu-mir-25 MI0000689 Mus musculus miR-25 stem-loop
CHROMOSOME : 5
SPAN : 138606549 - 138606632
LENGTH : 84
SEQUENCE : GGCCAGTGTTGAGAGGCGGAGACTTGGGCAATTGCTGGACGCTGCCCTGGGCATTGCACTTGTCTCGGTCTGACAGTGCCGGCC
OVERHANG THRESHOLD : 40%
*********************************************************************************************************
TARGET
******************************
CATEGORY : MATURE
ID : mmu-miR-25
ACCID : MI0000689
PARENT : mmu-mir-25
CHROMOSOME : 5
START : 138606549
STOP : 138606632
OFFSET : 52..73
SEQUENCE : CATTGCACTTGTCTCGGTCTGA
STRAND : -
******************************
*** MATURE ***
____________________________________________________________________________________
GGCCAGTGTTGAGAGGCGGAGACTTGGGCAATTGCTGGACGCTGCCCTGGGCATTGCACTTGTCTCGGTCTGACAGTGCCGGCC REF 5 138606549 - 138606632
CATTGCACTTGTCTCGGTCTGA MATURE 5 138606601 - 138606705 mmu-miR-25 -
____________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
..................................................GCATTGCACTTGTCTCaGTCTG............. 20914_27_0_0_0_0_38 MATURE 65 12.45 27 11.79 38 12.97 16A5
..................................................GCATTGCACTTGTCTCGaTCTGt............ 38693_33_0_0_0_0_27 MATURE 60 11.49 33 14.41 27 9.22 17A4
..................................................GCATTGCACTTGTCTCGaTCTG............. 36977_27_0_0_0_0_30 MATURE 57 10.92 27 11.79 30 10.24 17A4
..................................................GCATTGCACTTGTCTCGGTCTGt............ 27145_19_0_0_0_0_30 MATURE 49 9.39 19 8.30 30 10.24 22
..................................................GCATTGCACTTGTCTCGGTCTGAt........... 43383_11_0_0_0_0_15 MATURE 26 4.98 11 4.80 15 5.12 23
..................................................GCATTGCACTTGTCTCGaTCTa............. 27748_15_0_0_0_0_8 MATURE 23 4.41 15 6.55 8 2.73 17A3
...................................................CATTGCACTTGTCcCGGTCTGAt........... 19982_2_0_0_0_0_16 MATURE 18 3.45 2 0.87 16 5.46 13C8
..................................................GCATTGCACTTGTCTCGcTCTGt............ 44309_12_0_0_0_0_5 MATURE 17 3.26 12 5.24 5 1.71 17C4
..................................................GCATTGCACTTGTCTCGGTCTa............. 40162_3_0_0_0_0_12 MATURE 15 2.87 3 1.31 12 4.10 21
...................................................CATTGCACTTGTCTCGaTCTG............. 39798_2_0_0_0_0_11 MATURE 13 2.49 2 0.87 11 3.75 16A4
..................................................GCATTGCACTTGTCTCGtTCTGt............ 22272_7_0_0_0_0_6 MATURE 13 2.49 7 3.06 6 2.05 17T4
..................................................GCATTGCACTTGTCTCaGTCTa............. 35703_7_0_0_0_0_5 MATURE 12 2.30 7 3.06 5 1.71 16A4
..................................................GCATTGCACTTGTCTCGaTCTGA............ 21747_5_0_0_0_0_5 MATURE 10 1.92 5 2.18 5 1.71 17A5
..................................................GCATTGCACTTGTCTCGGTCTGA............ 10981_2_0_0_0_0_6 MATURE 8 1.53 2 0.87 6 2.05 23
..................................................GCATTGCACTTGTCTCGGaCTGt............ 41752_4_0_0_0_0_4 MATURE 8 1.53 4 1.75 4 1.37 18A3
..................................................GCATTGCACTTGTCTCGaTCT.............. 7100_1_0_0_0_0_7 MATURE 8 1.53 1 0.44 7 2.39 17A3
...................................................CATTGCACTTGTCTCGGTCTGAt........... 38778_4_0_0_0_0_3 MATURE 7 1.34 4 1.75 3 1.02 22
...................................................CATTGCACTTGTCcCGGTCTGA............ 35996_1_0_0_0_0_5 MATURE 6 1.15 1 0.44 5 1.71 13C8
...................................................CATTGCACTTGTCTCGGTCTG............. 15207_2_0_0_0_0_4 MATURE 6 1.15 2 0.87 4 1.37 21
...................................................CATTGCACTTGTCTCGGaCTG............. 5289_1_0_0_0_0_3 MATURE 4 0.77 1 0.44 3 1.02 17A3
..................................................GCATTGCACTTGTCTCtGTCTG............. 40413_3_0_0_0_0_1 MATURE 4 0.77 3 1.31 1 0.34 16T5
..................................................GCATTGCACTTGTCTCGtTCTG............. 1408_3_0_0_0_0_1 MATURE 4 0.77 3 1.31 1 0.34 17T4
..................................................GCATTGCACTTGTCTCGGTCTG............. 14272_2_0_0_0_0_2 MATURE 4 0.77 2 0.87 2 0.68 22
..................................................GCATTGCACTTGTCTCaGTCTt............. 40725_2_0_0_0_0_2 MATURE 4 0.77 2 0.87 2 0.68 16A4
..............................................CTGcGCATTGCACTTGTCTCGGTCT.............. 26448_1_0_0_0_0_3 MATURE 4 0.77 1 0.44 3 1.02 3C21
..................................................GCATTGCACTTGTCTCGGaCTGA............ 17799_2_0_0_0_0_1 MATURE 3 0.57 2 0.87 1 0.34 18A4
...................................................CATTGCACTTGTCTCaGTCTG............. 36117_0_0_0_0_0_3 MATURE 3 0.57 0 0.00 3 1.02 15A5
..................................................GCATTGCACTTGTCTCGaTCTGc............ 12921_1_0_0_0_0_2 MATURE 3 0.57 1 0.44 2 0.68 17A4
...................................................CATTGCACTTGTCTCGGTCT.............. 31724_1_0_0_0_0_2 MATURE 3 0.57 1 0.44 2 0.68 20
...................................................CATTGCACTTGTCTCGGaCTGAt........... 40005_3_0_0_0_0_0 MATURE 3 0.57 3 1.31 0 0.00 17A4
..................................................GCATTGCACTTGTCTCGcTCTGA............ 7671_0_0_0_0_0_3 MATURE 3 0.57 0 0.00 3 1.02 17C5
..................................................GCATTGCACTTGTCTtGGTCT.............. 31984_1_0_0_0_0_2 MATURE 3 0.57 1 0.44 2 0.68 15T5
..................................................GCATTGCACTTGTCTCGGTtTG............. 40679_0_0_0_0_0_3 MATURE 3 0.57 0 0.00 3 1.02 19T2
...................................................CATTGCACTTGTCTCGGTCTGt............ 34081_1_0_0_0_0_2 MATURE 3 0.57 1 0.44 2 0.68 21
...................................................CATTGCACTTGTCTCGGTCTa............. 5085_0_0_0_0_0_3 MATURE 3 0.57 0 0.00 3 1.02 20
...................................................CATTGCACTTGTCTCGtTCTG............. 22765_0_0_0_0_0_2 MATURE 2 0.38 0 0.00 2 0.68 16T4
...................................................CATTGCACTTGTCTCGGTtTG............. 11278_0_0_0_0_0_2 MATURE 2 0.38 0 0.00 2 0.68 18T2
..................................................GCATTGCACTTGTCTCGGTCcGAt........... 28409_1_0_0_0_0_1 MATURE 2 0.38 1 0.44 1 0.34 20C2
..................................................GCATTGCACTTGTCTCGGcCTGt............ 44317_1_0_0_0_0_1 MATURE 2 0.38 1 0.44 1 0.34 18C3
..................................................GCATTGCACTTGTCTCcGTCTG............. 35093_1_0_0_0_0_1 MATURE 2 0.38 1 0.44 1 0.34 16C5
...................................................CATTGCACTTGTCcCGGTCTGAa........... 42439_0_0_0_0_0_2 MATURE 2 0.38 0 0.00 2 0.68 13C8
..................................................GCATTGCACTTGTCTCGGTCTt............. 37397_1_0_0_0_0_1 MATURE 2 0.38 1 0.44 1 0.34 21
..................................................GCATTGCACTTGTCTCGtTCTGA............ 9397_2_0_0_0_0_0 MATURE 2 0.38 2 0.87 0 0.00 17T5
...............................................TGcGCATTGCACTTGTCTCGGTCTG............. 41083_0_0_0_0_0_2 MATURE 2 0.38 0 0.00 2 0.68 2C22
..................................................GCATTGCACTTGTCTCGaTCTc............. 22309_0_0_0_0_0_1 MATURE 1 0.19 0 0.00 1 0.34 17A3
..................................................GCATTGCACTTGTCTCaGTCTc............. 17052_1_0_0_0_0_0 MATURE 1 0.19 1 0.44 0 0.00 16A4
..................................................GCATTGCACTTGTCTCGGaCTGAt........... 41167_1_0_0_0_0_0 MATURE 1 0.19 1 0.44 0 0.00 18A4
..................................................GCATTGCACTTGTCTCGGTtTGt............ 36231_1_0_0_0_0_0 MATURE 1 0.19 1 0.44 0 0.00 19T2
..................................................GCATTGCACTTGTCTCtGTCTa............. 4445_1_0_0_0_0_0 MATURE 1 0.19 1 0.44 0 0.00 16T4
....................................................ATTGCACTTGTCTCGGTCTa............. 40765_0_0_0_0_0_1 MATURE 1 0.19 0 0.00 1 0.34 19
...................................................CATTGCACTTGTCTCGGcCTG............. 13618_1_0_0_0_0_0 MATURE 1 0.19 1 0.44 0 0.00 17C3
..................................................GCATTGCACTTGTCTCGGTCTaACt.......... 5247_0_0_0_0_0_1 MATURE 1 0.19 0 0.00 1 0.34 21A2
.................................................GGCATTGCACTTGTCTCGGaCT.............. 2292_1_0_0_0_0_0 MATURE 1 0.19 1 0.44 0 0.00 19A2
...................................................CATTGCACTTGTCTCGGTCaGAt........... 33709_1_0_0_0_0_0 MATURE 1 0.19 1 0.44 0 0.00 19A2
...................................................CATTGCACTTGTCTCGGTtTGAa........... 7854_0_0_0_0_0_1 MATURE 1 0.19 0 0.00 1 0.34 18T3
...................................................CATTGCACTTGTCTCGGTCTt............. 20782_0_0_0_0_0_1 MATURE 1 0.19 0 0.00 1 0.34 20
..................................................GCATTGCACTTGTCTCGGTCaGA............ 36836_0_0_0_0_0_1 MATURE 1 0.19 0 0.00 1 0.34 20A2
..................................................GCATTGCACTTGTCTCGGcCTGAC........... 14846_1_0_0_0_0_0 MATURE 1 0.19 1 0.44 0 0.00 18C5
..................................................GCATTGCACTTGTCTCGGTgTGt............ 34080_1_0_0_0_0_0 MATURE 1 0.19 1 0.44 0 0.00 19G2
..................................................GCATTGCACTTGTCTCGGTaTGAt........... 12328_1_0_0_0_0_0 MATURE 1 0.19 1 0.44 0 0.00 19A3
...................................................CATTGCACTTGTCTCGGaCTGt............ 22851_1_0_0_0_0_0 MATURE 1 0.19 1 0.44 0 0.00 17A3
..................................................GCATTGCACTTGTCTCGGcCTGAa........... 20982_0_0_0_0_0_1 MATURE 1 0.19 0 0.00 1 0.34 18C4
..................................................GCATTGCACTTGTCTCGGTtTGAt........... 33660_1_0_0_0_0_0 MATURE 1 0.19 1 0.44 0 0.00 19T3
..................................................GCATTGCACTTGTCTCGGcCTGAt........... 34997_1_0_0_0_0_0 MATURE 1 0.19 1 0.44 0 0.00 18C4
..................................................GCATTGCACTTGTCTCGGTCTGc............ 44286_0_0_0_0_0_1 MATURE 1 0.19 0 0.00 1 0.34 22
...................................................CATTGCACTTGTCcCGGTCTGAC........... 21733_0_0_0_0_0_1 MATURE 1 0.19 0 0.00 1 0.34 13C9
...................................................CATTGCACTTGTCTCGaTCTGt............ 36654_1_0_0_0_0_0 MATURE 1 0.19 1 0.44 0 0.00 16A4
..................................................GCATTGCACTTGTCTCGGaCTt............. 37636_0_0_0_0_0_1 MATURE 1 0.19 0 0.00 1 0.34 18A2
..................................................GCATTGCACTTGTCTCcGTCTa............. 7711_1_0_0_0_0_0 MATURE 1 0.19 1 0.44 0 0.00 16C4
.................................................GGCATTGCACTTGTCTtGGTCT.............. 5046_1_0_0_0_0_0 MATURE 1 0.19 1 0.44 0 0.00 16T5
...................................................CATTGCACTTGTCTCGGgCTGAt........... 24902_1_0_0_0_0_0 MATURE 1 0.19 1 0.44 0 0.00 17G4
....................................................ATTGCACTTGTCTCGGTCTG............. 8624_1_0_0_0_0_0 MATURE 1 0.19 1 0.44 0 0.00 20
...................................................CATTGCACTTGTCTCGcTCTGt............ 14136_0_0_0_0_0_1 MATURE 1 0.19 0 0.00 1 0.34 16C4
---------- ---------- ----------
522 229 293
(43.87) (56.13)
*** OTHER ***
____________________________________________________________________________________
GGCCAGTGTTGAGAGGCGGAGACTTGGGCAATTGCTGGACGCTGCCCTGGGCATTGCACTTGTCTCGGTCTGACAGTGCCGGCC REF 5 138606549 - 138606632
CATTGCACTTGTCTCGGTCTGA MATURE 5 138606601 - 138606705 mmu-miR-25 -
____________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
...........AGAGGCGGAGACTTGGGCAATTGCT................................................. 40618_1_0_0_0_0_0 OTHER 1 50.00 1 50.00 0 0 25
...........AGAGGCGGAGACTTGGGCAcTTGCT................................................. 18005_1_0_0_0_0_0 OTHER 1 50.00 1 50.00 0 0 19C5
---------- ---------- ----------
2 2 0
(100.00) (0.00)
((( SUMMARY )))
-CAT- -REST- -ACT- -TOTAL- -TOTAL%-
---------- ---------- ---------- ---------- ----------
MATURE 229 293 522 99.62%
OTHER 2 0 2 0.38%
---------- ---------- ----------
231 293 524
[END]