[BEGIN]
REFERENCE HAIRPIN
***********************************************************************************************************************************
ID : mmu-mir-223
DESCRIPTION : mmu-mir-223 MI0000703 Mus musculus miR-223 stem-loop
CHROMOSOME : X
SPAN : 93438156 - 93438265
LENGTH : 110
SEQUENCE : TCTGGCCATCTGCAGTGTCACGCTCCGTGTATTTGACAAGCTGAGTTGGACACTCTGTGTGGTAGAGTGTCAGTTTGTCAAATACCCCAAGTGTGGCTCATGCCTATCAG
OVERHANG THRESHOLD : 40%
***********************************************************************************************************************************
TARGET
******************************
CATEGORY : MATURE
ID : mmu-miR-223
ACCID : MI0000703
PARENT : mmu-mir-223
CHROMOSOME : X
START : 93438156
STOP : 93438265
OFFSET : 68..89
SEQUENCE : TGTCAGTTTGTCAAATACCCCA
STRAND : +
******************************
*** MATURE ***
______________________________________________________________________________________________________________
TCTGGCCATCTGCAGTGTCACGCTCCGTGTATTTGACAAGCTGAGTTGGACACTCTGTGTGGTAGAGTGTCAGTTTGTCAAATACCCCAAGTGTGGCTCATGCCTATCAG REF X 93438156 - 93438265
TGTCAGTTTGTCAAATACCCCA MATURE X 93438224 - 93438354 mmu-miR-223 +
______________________________________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
..................................................................GTGTCAGTTTGTCAAATACCCCA...................... 34950_70_0_0_0_0_12 MATURE 82 15.41 70 15.38 12 15.58 23
..................................................................GTGTCAGTTTGTCAAATACCCCAt..................... 31096_61_0_0_0_0_8 MATURE 69 12.97 61 13.41 8 10.39 23
..................................................................GTGTCAGTTTGTCAAATACCCCAA..................... 28600_41_0_0_0_0_10 MATURE 51 9.59 41 9.01 10 12.99 24
..................................................................GTGTCAGTTTGTCAAATACCCC....................... 38739_38_0_0_0_0_1 MATURE 39 7.33 38 8.35 1 1.30 22
....................................................................GTCAGTTTGTCAAATACCCCAA..................... 35058_33_0_0_0_0_5 MATURE 38 7.14 33 7.25 5 6.49 22
..................................................................GTGTCAGTTTGTCAAATtCCCCA...................... 41456_17_0_0_0_0_5 MATURE 22 4.14 17 3.74 5 6.49 17T5
..................................................................GTGTCAGTTTGTCAAATACCC........................ 31383_10_0_0_0_0_5 MATURE 15 2.82 10 2.20 5 6.49 21
..................................................................GTGTCAGTTTGTCAAATACCCCAAt.................... 17323_11_0_0_0_0_1 MATURE 12 2.26 11 2.42 1 1.30 24
..................................................................GTGTCAGTTTGTCAAAaACCCC....................... 44296_10_0_0_0_0_1 MATURE 11 2.07 10 2.20 1 1.30 16A5
....................................................................GTCAGTTTGTCAAATACCCCAt..................... 22066_9_0_0_0_0_1 MATURE 10 1.88 9 1.98 1 1.30 21
..................................................................GTGTCAGTTTGTCAAATAtCCCAt..................... 43543_8_0_0_0_0_2 MATURE 10 1.88 8 1.76 2 2.60 18T4
..................................................................GTGTCAGTTTGTCAAATACCCCAAa.................... 12234_10_0_0_0_0_0 MATURE 10 1.88 10 2.20 0 0.00 24
..................................................................GTGTCAGTTTGTCAAATAaCCCAt..................... 35649_9_0_0_0_0_0 MATURE 9 1.69 9 1.98 0 0.00 18A4
..................................................................GTGTCAGTTTGTCAAATgCCCCA...................... 40647_9_0_0_0_0_0 MATURE 9 1.69 9 1.98 0 0.00 17G5
....................................................................GTCAGTTTGTCAAATACCCCAAt.................... 1241_7_0_0_0_0_1 MATURE 8 1.50 7 1.54 1 1.30 22
..................................................................GTGTCAGTTTGTCAAATACCCCt...................... 23122_6_0_0_0_0_1 MATURE 7 1.32 6 1.32 1 1.30 22
..................................................................GTGTCAGTTTGTCAAATACCCa....................... 42484_6_0_0_0_0_1 MATURE 7 1.32 6 1.32 1 1.30 21
..................................................................GTGTCAGTTTGTCAAATAaCCC....................... 39780_6_0_0_0_0_1 MATURE 7 1.32 6 1.32 1 1.30 18A3
..................................................................GTGTCAGTTTGTCAAATACCCCg...................... 37758_6_0_0_0_0_0 MATURE 6 1.13 6 1.32 0 0.00 22
..................................................................GTGTCAGTTTGTCAAAcACCCC....................... 32218_4_0_0_0_0_1 MATURE 5 0.94 4 0.88 1 1.30 16C5
....................................................................GTCAGTTTGTCAAATACCCCA...................... 17592_5_0_0_0_0_0 MATURE 5 0.94 5 1.10 0 0.00 21
..................................................................GTGTCAGTTTGTCAAATACCCt....................... 29446_3_0_0_0_0_1 MATURE 4 0.75 3 0.66 1 1.30 21
..................................................................GTGTCAGTTTGTCAAtTACCC........................ 24668_3_0_0_0_0_1 MATURE 4 0.75 3 0.66 1 1.30 15T5
..................................................................GTGTCAGTTTGTCAAATcCCCCA...................... 21780_3_0_0_0_0_1 MATURE 4 0.75 3 0.66 1 1.30 17C5
....................................................................GTCAGTTTGTCAAATACCCC....................... 24501_2_0_0_0_0_2 MATURE 4 0.75 2 0.44 2 2.60 20
..................................................................GTGTCAGTTTGTCAAATAaCCCA...................... 30756_4_0_0_0_0_0 MATURE 4 0.75 4 0.88 0 0.00 18A4
....................................................................GTCAGTTTGTCAAATACCCCAAa.................... 38928_3_0_0_0_0_0 MATURE 3 0.56 3 0.66 0 0.00 22
....................................................................GTCAGTTTGTCAAATtCCCCA...................... 8085_3_0_0_0_0_0 MATURE 3 0.56 3 0.66 0 0.00 15T5
..................................................................GTGTCAGTTTGTCAAATtCCCCt...................... 31470_2_0_0_0_0_1 MATURE 3 0.56 2 0.44 1 1.30 17T4
..................................................................GTGTCAGTTTGTCAAATACCCCAc..................... 38695_2_0_0_0_0_1 MATURE 3 0.56 2 0.44 1 1.30 23
....................................................................GTCAGTTTGTCAAATAaCCCAA..................... 19748_3_0_0_0_0_0 MATURE 3 0.56 3 0.66 0 0.00 16A5
..................................................................GTGTCAGTTTGTCAAATACtCCc...................... 23581_2_0_0_0_0_0 MATURE 2 0.38 2 0.44 0 0.00 19T2
.................................................................AGTGTCAGTTTGTCAAATACCCCAt..................... 42953_2_0_0_0_0_0 MATURE 2 0.38 2 0.44 0 0.00 24
.................................................................AGTGTCAGTTTGTCAAATtCCCCA...................... 28642_0_0_0_0_0_2 MATURE 2 0.38 0 0.00 2 2.60 18T5
...................................................................TGTCAGTTTGTCAAATACCCCA...................... 5270_2_0_0_0_0_0 MATURE 2 0.38 2 0.44 0 0.00 22
..................................................................GTGTCAGTTTGTCAAATACaCCg...................... 33774_2_0_0_0_0_0 MATURE 2 0.38 2 0.44 0 0.00 19A2
..................................................................GTtTCAGTTTGTCAAATACCCC....................... 31893_0_0_0_0_0_2 MATURE 2 0.38 0 0.00 2 2.60 2T19
..................................................................GTGTCAGTTTGTCAAATgCCCC....................... 32565_2_0_0_0_0_0 MATURE 2 0.38 2 0.44 0 0.00 17G4
..................................................................GTGTCAGTTTGTCAAATACCCCAAc.................... 4497_2_0_0_0_0_0 MATURE 2 0.38 2 0.44 0 0.00 24
..................................................................GTGTCAGTTTGTCAAATACCt........................ 24195_1_0_0_0_0_1 MATURE 2 0.38 1 0.22 1 1.30 20
..................................................................GTGTCAGTTTGTCAAATACCCCc...................... 31741_2_0_0_0_0_0 MATURE 2 0.38 2 0.44 0 0.00 22
..................................................................GTGTCAGTTTGTCAAATAtCCCAA..................... 36925_2_0_0_0_0_0 MATURE 2 0.38 2 0.44 0 0.00 18T5
..................................................................GTGTCAGTTTGTCAAATACtCCA...................... 29780_2_0_0_0_0_0 MATURE 2 0.38 2 0.44 0 0.00 19T3
....................................................................GTCAGTTTGTCAAATACCtCAA..................... 30952_1_0_0_0_0_0 MATURE 1 0.19 1 0.22 0 0.00 18T3
..................................................................GTGTCAGTTTGTCAAATACgCCAt..................... 11398_1_0_0_0_0_0 MATURE 1 0.19 1 0.22 0 0.00 19G3
..................................................................GTGTCAGTTTGTCAAAcACCC........................ 15078_1_0_0_0_0_0 MATURE 1 0.19 1 0.22 0 0.00 16C4
..................................................................GTGTCAGTTTGTCAAATtCCCCg...................... 28212_1_0_0_0_0_0 MATURE 1 0.19 1 0.22 0 0.00 17T4
..................................................................GTGTCAGcTTGTCAAATACCCt....................... 19867_1_0_0_0_0_0 MATURE 1 0.19 1 0.22 0 0.00 7C13
..................................................................GTGTCAGTTTGTCAAATAaCCCAA..................... 15026_0_0_0_0_0_1 MATURE 1 0.19 0 0.00 1 1.30 18A5
....................................................................GTCAGTTTGTCAAATACCCCAc..................... 24472_1_0_0_0_0_0 MATURE 1 0.19 1 0.22 0 0.00 21
..................................................................GTGTCAGTTTGTCAAATAC.......................... 35166_1_0_0_0_0_0 MATURE 1 0.19 1 0.22 0 0.00 19
.................................................................AGTGTCAGTTTGTCAAATAC.......................... 43579_1_0_0_0_0_0 MATURE 1 0.19 1 0.22 0 0.00 20
....................................................................GTCAGTTTGTCAAATACCaCAAt.................... 30639_1_0_0_0_0_0 MATURE 1 0.19 1 0.22 0 0.00 18A3
..................................................................GTGTCAGTTTGTCAAAcACCCt....................... 17206_0_0_0_0_0_1 MATURE 1 0.19 0 0.00 1 1.30 16C4
..................................................................GTGTCAGTTTGTCAAATACaCCAt..................... 343_1_0_0_0_0_0 MATURE 1 0.19 1 0.22 0 0.00 19A3
..................................................................GTGTCAGTTTGTCAAATACCaCA...................... 28570_1_0_0_0_0_0 MATURE 1 0.19 1 0.22 0 0.00 20A2
....................................................................GTCAGTTTGTCAAATAtCCCAA..................... 31842_1_0_0_0_0_0 MATURE 1 0.19 1 0.22 0 0.00 16T5
..................................................................GTGTCAGTTTGTCAAATACCaCAt..................... 36077_1_0_0_0_0_0 MATURE 1 0.19 1 0.22 0 0.00 20A2
..................................................................GTGTCAGTTTGTCAAATACCCCAAG.................... 10570_1_0_0_0_0_0 MATURE 1 0.19 1 0.22 0 0.00 25
...................................................................TGTCAGTTTGTCAAATACCCCAAt.................... 12628_0_0_0_0_0_1 MATURE 1 0.19 0 0.00 1 1.30 23
..................................................................GTGcCAGTTTGTCAAATACCC........................ 13957_0_0_0_0_0_1 MATURE 1 0.19 0 0.00 1 1.30 3C17
...................................................................TGTCAGTTTGTCAAATACCCCAAGT................... 24509_1_0_0_0_0_0 MATURE 1 0.19 1 0.22 0 0.00 25
..................................................................GTGcCAGTTTGTCAAATACCCCAt..................... 31656_1_0_0_0_0_0 MATURE 1 0.19 1 0.22 0 0.00 3C19
....................................................................GTCAGTTTGTCAAATACCCa....................... 12583_1_0_0_0_0_0 MATURE 1 0.19 1 0.22 0 0.00 19
....................................................................GTCAGTTTGTCAAATAgCCCAt..................... 30213_0_0_0_0_0_1 MATURE 1 0.19 0 0.00 1 1.30 16G4
..................................................................GTGTCAGTTTGTCAAATACCaCAAt.................... 39441_1_0_0_0_0_0 MATURE 1 0.19 1 0.22 0 0.00 20A3
..................................................................GTGTCAGTTTGTCAAATAgCCCAA..................... 1831_1_0_0_0_0_0 MATURE 1 0.19 1 0.22 0 0.00 18G5
....................................................................GTCAGTTTGTCAAATACCaCAA..................... 36063_1_0_0_0_0_0 MATURE 1 0.19 1 0.22 0 0.00 18A3
..................................................................GTGTCAGTTTGTCAAATACaCC....................... 27607_1_0_0_0_0_0 MATURE 1 0.19 1 0.22 0 0.00 19A2
..................................................................GTGTCAGTTTGTCAAgTACCC........................ 39666_1_0_0_0_0_0 MATURE 1 0.19 1 0.22 0 0.00 15G5
..................................................................GTGTCAGTTTGTCAAATACCCg....................... 9839_1_0_0_0_0_0 MATURE 1 0.19 1 0.22 0 0.00 21
..................................................................GTGTCAGTTTGTCAAATACCCCAg..................... 23470_0_0_0_0_0_1 MATURE 1 0.19 0 0.00 1 1.30 23
..............................................................TAGAGTGTCAGTTTGTCAAATACCC........................ 47_1_0_0_0_0_0 MATURE 1 0.19 1 0.22 0 0.00 25
....................................................................GTCAGTTTGTCAAATAaCCCAt..................... 14957_1_0_0_0_0_0 MATURE 1 0.19 1 0.22 0 0.00 16A4
..................................................................GTGTCAGTTTGTCAAATAtCCCA...................... 29921_1_0_0_0_0_0 MATURE 1 0.19 1 0.22 0 0.00 18T4
.................................................................AGTGTCAGTTTGTCAAATACCCC....................... 37900_0_0_0_0_0_1 MATURE 1 0.19 0 0.00 1 1.30 23
..................................................................GTGTCAGTTTGTCAAATACCtCA...................... 41129_1_0_0_0_0_0 MATURE 1 0.19 1 0.22 0 0.00 20T2
..................................................................GTGTCAGTTTGTCAAATACCCCgAG.................... 23555_1_0_0_0_0_0 MATURE 1 0.19 1 0.22 0 0.00 22G2
...................................................................TGTCAGTTTGTCAAATACCCCAA..................... 21404_0_0_0_0_0_1 MATURE 1 0.19 0 0.00 1 1.30 23
..................................................................GTGTCAGTTTGTCAAATAgCCCAt..................... 7877_0_0_0_0_0_1 MATURE 1 0.19 0 0.00 1 1.30 18G4
..................................................................GTGTCAGTTTGTCAAATcCCCa....................... 8410_1_0_0_0_0_0 MATURE 1 0.19 1 0.22 0 0.00 17C3
.................................................................AGTGTCAGTTTGTCAAATACCtCA...................... 17526_1_0_0_0_0_0 MATURE 1 0.19 1 0.22 0 0.00 21T2
..................................................................GTGTCAGTTTGTCAAAaACCCCA...................... 3081_1_0_0_0_0_0 MATURE 1 0.19 1 0.22 0 0.00 16A6
..................................................................GTGTCAGTTTGTCAAATtCCCC....................... 36486_1_0_0_0_0_0 MATURE 1 0.19 1 0.22 0 0.00 17T4
---------- ---------- ----------
532 455 77
(85.53) (14.47)
*** OTHER ***
______________________________________________________________________________________________________________
TCTGGCCATCTGCAGTGTCACGCTCCGTGTATTTGACAAGCTGAGTTGGACACTCTGTGTGGTAGAGTGTCAGTTTGTCAAATACCCCAAGTGTGGCTCATGCCTATCAG REF X 93438156 - 93438265
TGTCAGTTTGTCAAATACCCCA MATURE X 93438224 - 93438354 mmu-miR-223 +
______________________________________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
.........................CGTGTATTTGACAAGCcGAGTT................................................................ 1448_1_0_0_0_0_0 OTHER 1 100.00 1 100.00 0 0 16C5
---------- ---------- ----------
1 1 0
(100.00) (0.00)
((( SUMMARY )))
-CAT- -REST- -ACT- -TOTAL- -TOTAL%-
---------- ---------- ---------- ---------- ----------
MATURE 455 77 532 99.81%
OTHER 1 0 1 0.19%
---------- ---------- ----------
456 77 533
[END]