[BEGIN]

REFERENCE HAIRPIN
****************************************************************************************************
ID                 : mmu-mir-222
DESCRIPTION        : mmu-mir-222 MI0000710 Mus musculus miR-222 stem-loop
CHROMOSOME         : X
SPAN               : 18724019 - 18724097
LENGTH             : 79
SEQUENCE           : CCCTCAGTGGCTCAGTAGCCAGTGTAGATCCTGTCTTTGGTAATCAGCAGCTACATCTGGCTACTGGGTCTCTGGTGGC
OVERHANG THRESHOLD : 40%
****************************************************************************************************


TARGET
******************************
CATEGORY   : MATURE
ID         : mmu-miR-222
ACCID      : MI0000710
PARENT     : mmu-mir-222
CHROMOSOME : X
START      : 18724019
STOP       : 18724097
OFFSET     : 49..69
SEQUENCE   : AGCTACATCTGGCTACTGGGT
STRAND     : -
******************************



*** MATURE ***
_______________________________________________________________________________
CCCTCAGTGGCTCAGTAGCCAGTGTAGATCCTGTCTTTGGTAATCAGCAGCTACATCTGGCTACTGGGTCTCTGGTGGC REF                  X                    18724019 - 18724097  
                                                AGCTACATCTGGCTACTGGGT           MATURE               X                    18724068 - 18724166  mmu-miR-222          -                    
_______________________________________________________________________________

                                                                           -SEQ-               -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
................................................AGCTACATCTGGCTACTGGGTCTC........   26022_4_0_0_0_0_17       MATURE           21         8.57            4         6.67           17         9.19                        24   
................................................AGCTACATCTGGCTACTGGGTCTCa.......    9524_4_0_0_0_0_14       MATURE           18         7.35            4         6.67           14         7.57                        24   
................................................AGCTACATCTGGCTACTGGaTCTC........   14863_2_0_0_0_0_15       MATURE           17         6.94            2         3.33           15         8.11                      19A4   
................................................AGCTACATCTGGCTACTGGGTCTCT.......   29276_4_0_0_0_0_10       MATURE           14         5.71            4         6.67           10         5.41                        25   
................................................AGCTACATCTGGCTACTGaGTCTC........   12766_1_0_0_0_0_11       MATURE           12         4.90            1         1.67           11         5.95                      18A5   
................................................AGCTACATCTGGCTACTGaGTCT.........    41550_3_0_0_0_0_6       MATURE            9         3.67            3         5.00            6         3.24                      18A4   
................................................AGCTACATCTGGCTACTGGaTCTCT.......    34282_4_0_0_0_0_3       MATURE            7         2.86            4         6.67            3         1.62                      19A5   
................................................AGCTACATCTGGCTACTGGaTCTCa.......     7591_0_0_0_0_0_7       MATURE            7         2.86            0         0.00            7         3.78                      19A4   
................................................AGCTACATCTGGCTACTGGaTCTt........    37999_2_0_0_0_0_4       MATURE            6         2.45            2         3.33            4         2.16                      19A3   
................................................AGCTACATCTGGCTACTGGGTCT.........    33292_3_0_0_0_0_2       MATURE            5         2.04            3         5.00            2         1.08                        23   
.................................................GCTACATCTGGCTACTGGGTCTCTt......      226_0_0_0_0_0_5       MATURE            5         2.04            0         0.00            5         2.70                        24   
................................................AGCTACATCTGGCTACTGGGTCTa........    10528_0_0_0_0_0_5       MATURE            5         2.04            0         0.00            5         2.70                        23   
................................................AGCTACATCTGGCTACTGGaTCTa........    13384_1_0_0_0_0_4       MATURE            5         2.04            1         1.67            4         2.16                      19A3   
................................................AGCTACATCTGGCTACTGGGTCTt........    18832_4_0_0_0_0_1       MATURE            5         2.04            4         6.67            1         0.54                        23   
................................................AGCTACATCTGGCTACTGGaTCT.........    30285_2_0_0_0_0_3       MATURE            5         2.04            2         3.33            3         1.62                      19A3   
..............................................GCAGCTACATCTGGCTACTaGGT...........    39916_3_0_0_0_0_1       MATURE            4         1.63            3         5.00            1         0.54                      19A3   
................................................AGCTACATCTGGCTACTGtGTCTC........     7535_1_0_0_0_0_3       MATURE            4         1.63            1         1.67            3         1.62                      18T5   
................................................AGCTACATCTGGCTACTGGGTCaCT.......    10100_2_0_0_0_0_1       MATURE            3         1.22            2         3.33            1         0.54                      22A2   
................................................AGCTACATCTGGCTACTGGcTCTCT.......    17673_0_0_0_0_0_3       MATURE            3         1.22            0         0.00            3         1.62                      19C5   
................................................AGCTACATCTGGCTACTaGGTCT.........    33883_0_0_0_0_0_3       MATURE            3         1.22            0         0.00            3         1.62                      17A5   
................................................AGCTACATCTGGCTACTGaGTCa.........    25960_0_0_0_0_0_3       MATURE            3         1.22            0         0.00            3         1.62                      18A3   
................................................AGCTACATCTGGCTACTGGGTCcCT.......    40579_1_0_0_0_0_2       MATURE            3         1.22            1         1.67            2         1.08                      22C2   
................................................AGCTACATCTGGCTACTGcGTCTa........    43471_1_0_0_0_0_1       MATURE            2         0.82            1         1.67            1         0.54                      18C4   
...............................................CAGCTACATCTGGCTACTGGGTCTt........    30868_0_0_0_0_0_2       MATURE            2         0.82            0         0.00            2         1.08                        24   
..............................................GCAGCTACATCTGGCTAaTGGGT...........      539_2_0_0_0_0_0       MATURE            2         0.82            2         3.33            0         0.00                      17A5   
................................................AGCTACATCTGGCTACTGGGTtTC........    34092_0_0_0_0_0_2       MATURE            2         0.82            0         0.00            2         1.08                      21T2   
................................................AGCTACATCTGGCTACTaGGTCa.........    21658_1_0_0_0_0_1       MATURE            2         0.82            1         1.67            1         0.54                      17A4   
.................................................GCTACATCTGGCTACTGGGTCTCTa......    26348_0_0_0_0_0_2       MATURE            2         0.82            0         0.00            2         1.08                        24   
................................................AGCTACATCTGGCTACTGGGT...........    28474_0_0_0_0_0_2       MATURE            2         0.82            0         0.00            2         1.08                        21   
................................................AGCTACATCTGGCTACTGGGTaTCT.......     7170_0_0_0_0_0_2       MATURE            2         0.82            0         0.00            2         1.08                      21A3   
..............................................GCAGCTACATCTGGCTACTGGa............    25787_0_0_0_0_0_2       MATURE            2         0.82            0         0.00            2         1.08                        21   
.............................................AGCAGCTACATCTGGCTACTGGGT...........     1430_2_0_0_0_0_0       MATURE            2         0.82            2         3.33            0         0.00                        24   
.................................................GCTACATCTGGCTACTGGGaCTCTt......     4147_0_0_0_0_0_2       MATURE            2         0.82            0         0.00            2         1.08                      19A4   
..............................................GCAGCTACATCTGGCTACTGGGTCT.........    39692_1_0_0_0_0_1       MATURE            2         0.82            1         1.67            1         0.54                        25   
................................................AGCTACATCTGGCTACTGGtTCTCT.......    22147_0_0_0_0_0_2       MATURE            2         0.82            0         0.00            2         1.08                      19T5   
................................................AGCTACATCTGGCTACTGGtTCT.........    18918_0_0_0_0_0_2       MATURE            2         0.82            0         0.00            2         1.08                      19T3   
................................................AGCTACATCTGGCTACTGGGcCT.........    12066_1_0_0_0_0_0       MATURE            1         0.41            1         1.67            0         0.00                      20C2   
.............................................AGCAGCTACATCTGGCTACgGGGT...........    27247_1_0_0_0_0_0       MATURE            1         0.41            1         1.67            0         0.00                      19G4   
.............................................AGCAGCTACATCTGGCTACcGGt............    32976_0_0_0_0_0_1       MATURE            1         0.41            0         0.00            1         0.54                      19C2   
...............................................CAGCTACATCTGGCTACTGaGTCTC........    14337_0_0_0_0_0_1       MATURE            1         0.41            0         0.00            1         0.54                      19A5   
................................................AGCTACATCTGGCTACTGcGTCTt........    13297_0_0_0_0_0_1       MATURE            1         0.41            0         0.00            1         0.54                      18C4   
................................................AGCTACATCTGGCTACTGaGTCTa........    36472_0_0_0_0_0_1       MATURE            1         0.41            0         0.00            1         0.54                      18A4   
................................................AGCTACATCTGGCTACTaGGTt..........     1407_1_0_0_0_0_0       MATURE            1         0.41            1         1.67            0         0.00                      17A3   
................................................AGCTACATCTGGCTACTGGGTCc.........    16333_0_0_0_0_0_1       MATURE            1         0.41            0         0.00            1         0.54                        22   
..............................................GCAGCTACATCTGGCTACcGGGTt..........    37201_1_0_0_0_0_0       MATURE            1         0.41            1         1.67            0         0.00                      18C4   
.............................................AGCAGCTACATCTGGCTACTGGG............    38593_0_0_0_0_0_1       MATURE            1         0.41            0         0.00            1         0.54                        23   
................................................AGCTACATCTGGCTACTGGGaCTt........    30944_0_0_0_0_0_1       MATURE            1         0.41            0         0.00            1         0.54                      20A2   
...............................................CAGCTACATCTGGCTACTGGGTCTa........    20386_0_0_0_0_0_1       MATURE            1         0.41            0         0.00            1         0.54                        24   
................................................AGCTACATCTGGCTACTGGG............    23872_0_0_0_0_0_1       MATURE            1         0.41            0         0.00            1         0.54                        20   
..............................................GCAGCTACATCTGGCTACcGG.............    27276_1_0_0_0_0_0       MATURE            1         0.41            1         1.67            0         0.00                      18C2   
................................................AGCTACATCTGGCTACTGGtTCTC........    35795_0_0_0_0_0_1       MATURE            1         0.41            0         0.00            1         0.54                      19T4   
................................................AGCTACATCTGGCTACTGGtTCTa........    13697_0_0_0_0_0_1       MATURE            1         0.41            0         0.00            1         0.54                      19T3   
................................................AGCTACATCTGGCTACTGGGcCTCc.......    41286_1_0_0_0_0_0       MATURE            1         0.41            1         1.67            0         0.00                      20C3   
................................................AGCTACATCTGGCTACTGGGTCTg........    29329_0_0_0_0_0_1       MATURE            1         0.41            0         0.00            1         0.54                        23   
................................................AGCTACATCTGGCTACTGaGTCTt........     3961_0_0_0_0_0_1       MATURE            1         0.41            0         0.00            1         0.54                      18A4   
................................................AGCTACATCTGGCTACTGcGTCTC........    19762_0_0_0_0_0_1       MATURE            1         0.41            0         0.00            1         0.54                      18C5   
................................................AGCTACATCTGGCTACTGGGaCTa........      224_0_0_0_0_0_1       MATURE            1         0.41            0         0.00            1         0.54                      20A2   
................................................AGCTACATCTGGCTACTaGGTCc.........    35297_0_0_0_0_0_1       MATURE            1         0.41            0         0.00            1         0.54                      17A4   
................................................AGCTACATCTGGCTACTGGGTCTCg.......    25484_0_0_0_0_0_1       MATURE            1         0.41            0         0.00            1         0.54                        24   
..............................................GCAGCTACATCTGGCTACTGtGTCg.........    12091_0_0_0_0_0_1       MATURE            1         0.41            0         0.00            1         0.54                      20T3   
..............................................GCAGCTACATCTGGCTAtTGGGT...........    34780_0_0_0_0_0_1       MATURE            1         0.41            0         0.00            1         0.54                      17T5   
..............................................GCAGCTACATCTGGCTACTGGG............     1787_0_0_0_0_0_1       MATURE            1         0.41            0         0.00            1         0.54                        22   
..............................................GCAGCTACATCTGGCTACgGGa............    42557_0_0_0_0_0_1       MATURE            1         0.41            0         0.00            1         0.54                      18G2   
..............................................GCAGCTACATCTGGCTACTGGGT...........    22345_0_0_0_0_0_1       MATURE            1         0.41            0         0.00            1         0.54                        23   
..................................................CTACATCTGGCTACTGGtTCTCa.......    26302_1_0_0_0_0_0       MATURE            1         0.41            1         1.67            0         0.00                      17T4   
................................................AGCTACATCTGGCTACTGGt............    24055_0_0_0_0_0_1       MATURE            1         0.41            0         0.00            1         0.54                        19   
.................................................GCTACATCTGGCTACTGGGTCT.........    18604_1_0_0_0_0_0       MATURE            1         0.41            1         1.67            0         0.00                        22   
................................................AGCTACATCTGGCTACTGGGTtTCT.......    41620_0_0_0_0_0_1       MATURE            1         0.41            0         0.00            1         0.54                      21T3   
................................................AGCTACATCTGGCTACTGGcTCTC........     8944_0_0_0_0_0_1       MATURE            1         0.41            0         0.00            1         0.54                      19C4   
.................................................GCTACATCTGGCTACTGGGTtTCTt......    31611_0_0_0_0_0_1       MATURE            1         0.41            0         0.00            1         0.54                      20T3   
................................................AGCTACATCTGGCTACTGGaTCTCc.......    43810_0_0_0_0_0_1       MATURE            1         0.41            0         0.00            1         0.54                      19A4   
................................................AGCTACATCTGGCTACTGGGaCTCa.......    39636_1_0_0_0_0_0       MATURE            1         0.41            1         1.67            0         0.00                      20A3   
................................................AGCTACATCTGGCTACTGGcTCTCa.......    13193_0_0_0_0_0_1       MATURE            1         0.41            0         0.00            1         0.54                      19C4   
..............................................GCAGCTACATCTGGCTACcGGGT...........    42043_0_0_0_0_0_1       MATURE            1         0.41            0         0.00            1         0.54                      18C4   
.................................................GCTACATCTGGCTACTGGGcCTC........    30437_0_0_0_0_0_1       MATURE            1         0.41            0         0.00            1         0.54                      19C3   
................................................AGCTACATCTGGCTACTGGtTCTCa.......    12944_0_0_0_0_0_1       MATURE            1         0.41            0         0.00            1         0.54                      19T4   
................................................AGCTACATCTGGCTACTGGGTC..........    22324_0_0_0_0_0_1       MATURE            1         0.41            0         0.00            1         0.54                        22   
................................................AGCTACATCTGGCTACTGGGgCTCc.......    23364_0_0_0_0_0_1       MATURE            1         0.41            0         0.00            1         0.54                      20G3   
................................................AGCTACATCTGGCTACTGGGTCTCc.......    41319_0_0_0_0_0_1       MATURE            1         0.41            0         0.00            1         0.54                        24   
.............................................AGCAGCTACATCTGGCTACaGGGT...........     3994_1_0_0_0_0_0       MATURE            1         0.41            1         1.67            0         0.00                      19A4   
.............................................AGCAGCTACATCTGGCTACTGGGa...........    23835_1_0_0_0_0_0       MATURE            1         0.41            1         1.67            0         0.00                        23   
..............................................GCAGCTACATCTGGCTACTGaGT...........    12566_0_0_0_0_0_1       MATURE            1         0.41            0         0.00            1         0.54                      20A2   
..............................................GCAGCTACATCTGGCTtCTGG.............    38686_0_0_0_0_0_1       MATURE            1         0.41            0         0.00            1         0.54                      16T4   
................................................AGCTACATCTGGCTACTGGGaCTC........     2861_0_0_0_0_0_1       MATURE            1         0.41            0         0.00            1         0.54                      20A3   
.............................................AGCAGCTACATCTGGCTACTGGGTt..........    19339_0_0_0_0_0_1       MATURE            1         0.41            0         0.00            1         0.54                        24   
..............................................GCAGCTACATCTGGCTACTGG.............     3899_1_0_0_0_0_0       MATURE            1         0.41            1         1.67            0         0.00                        21   
..............................................GCAGCTACATCTGGCTcCTGGG............     6460_0_0_0_0_0_1       MATURE            1         0.41            0         0.00            1         0.54                      16C5   
................................................AGCTACATCTGGCTACTGGGTgTC........    22822_0_0_0_0_0_1       MATURE            1         0.41            0         0.00            1         0.54                      21G2   
................................................AGCTACATCTGGCTACTGGGTCa.........    37430_0_0_0_0_0_1       MATURE            1         0.41            0         0.00            1         0.54                        22   
                                                                                                                     ----------                ----------                ----------   
                                                                                                                            245                        60                       185                                          
                                                                                                                                                  (24.49)                   (75.51)                                       




*** OTHER ***
_______________________________________________________________________________
CCCTCAGTGGCTCAGTAGCCAGTGTAGATCCTGTCTTTGGTAATCAGCAGCTACATCTGGCTACTGGGTCTCTGGTGGC REF                  X                    18724019 - 18724097  
                                                AGCTACATCTGGCTACTGGGT           MATURE               X                    18724068 - 18724166  mmu-miR-222          -                    
_______________________________________________________________________________

                                                                           -SEQ-              -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
........GGCTCAGTAGCCAGTGTAGATCC.................................................   41024_0_0_0_0_0_2        OTHER            2        16.67            0         0.00            2        20.00                        23   
........GGCTCAGTAGCCAGTGTAGAT...................................................    4711_1_0_0_0_0_0        OTHER            1         8.33            1        50.00            0         0.00                        21   
.........GCTCAGTAGCCAGTGTAGATCC.................................................   26323_0_0_0_0_0_1        OTHER            1         8.33            0         0.00            1        10.00                        22   
........GGCTCAGTAGCCAGTGTAGAaCC.................................................   40859_0_0_0_0_0_1        OTHER            1         8.33            0         0.00            1        10.00                      20A2   
...........TCAGTAGCCAGTGTAGAaCCTGT..............................................    8607_0_0_0_0_0_1        OTHER            1         8.33            0         0.00            1        10.00                      17A5   
........GGCTCAGTAGCCAGTGTAGATC..................................................   25872_0_0_0_0_0_1        OTHER            1         8.33            0         0.00            1        10.00                        22   
........GGCTCAGTAGCCAGTGTAGAgCC.................................................   29072_0_0_0_0_0_1        OTHER            1         8.33            0         0.00            1        10.00                      20G2   
...........TCAGTAGCCAGTGTAGATtCTGT..............................................   43192_0_0_0_0_0_1        OTHER            1         8.33            0         0.00            1        10.00                      18T4   
...........TCAGTAGCCAGTGTAGATCCTGTa.............................................   42425_1_0_0_0_0_0        OTHER            1         8.33            1        50.00            0         0.00                        23   
.........GCTCAGTAGCCAGTGTAGATCCTa...............................................   14452_0_0_0_0_0_1        OTHER            1         8.33            0         0.00            1        10.00                        23   
...........TCAGTAGCCAGTGTAGATaCTGT..............................................   18814_0_0_0_0_0_1        OTHER            1         8.33            0         0.00            1        10.00                      18A4   
                                                                                                                    ----------                ----------                ----------   
                                                                                                                            12                         2                        10                                          
                                                                                                                                                 (16.67)                   (83.33)                                       




((( SUMMARY )))

          -CAT-          -REST-           -ACT-         -TOTAL-        -TOTAL%-
     ----------      ----------      ----------      ----------      ----------
         MATURE              60             185             245          95.33%
          OTHER               2              10              12           4.67%
                     ----------      ----------      ----------                
                             62             195             257                



[END]
