[BEGIN]
REFERENCE HAIRPIN
****************************************************************************************************
ID : mmu-mir-222
DESCRIPTION : mmu-mir-222 MI0000710 Mus musculus miR-222 stem-loop
CHROMOSOME : X
SPAN : 18724019 - 18724097
LENGTH : 79
SEQUENCE : CCCTCAGTGGCTCAGTAGCCAGTGTAGATCCTGTCTTTGGTAATCAGCAGCTACATCTGGCTACTGGGTCTCTGGTGGC
OVERHANG THRESHOLD : 40%
****************************************************************************************************
TARGET
******************************
CATEGORY : MATURE
ID : mmu-miR-222
ACCID : MI0000710
PARENT : mmu-mir-222
CHROMOSOME : X
START : 18724019
STOP : 18724097
OFFSET : 49..69
SEQUENCE : AGCTACATCTGGCTACTGGGT
STRAND : -
******************************
*** MATURE ***
_______________________________________________________________________________
CCCTCAGTGGCTCAGTAGCCAGTGTAGATCCTGTCTTTGGTAATCAGCAGCTACATCTGGCTACTGGGTCTCTGGTGGC REF X 18724019 - 18724097
AGCTACATCTGGCTACTGGGT MATURE X 18724068 - 18724166 mmu-miR-222 -
_______________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
................................................AGCTACATCTGGCTACTGGGTCTC........ 26022_4_0_0_0_0_17 MATURE 21 8.57 4 6.67 17 9.19 24
................................................AGCTACATCTGGCTACTGGGTCTCa....... 9524_4_0_0_0_0_14 MATURE 18 7.35 4 6.67 14 7.57 24
................................................AGCTACATCTGGCTACTGGaTCTC........ 14863_2_0_0_0_0_15 MATURE 17 6.94 2 3.33 15 8.11 19A4
................................................AGCTACATCTGGCTACTGGGTCTCT....... 29276_4_0_0_0_0_10 MATURE 14 5.71 4 6.67 10 5.41 25
................................................AGCTACATCTGGCTACTGaGTCTC........ 12766_1_0_0_0_0_11 MATURE 12 4.90 1 1.67 11 5.95 18A5
................................................AGCTACATCTGGCTACTGaGTCT......... 41550_3_0_0_0_0_6 MATURE 9 3.67 3 5.00 6 3.24 18A4
................................................AGCTACATCTGGCTACTGGaTCTCT....... 34282_4_0_0_0_0_3 MATURE 7 2.86 4 6.67 3 1.62 19A5
................................................AGCTACATCTGGCTACTGGaTCTCa....... 7591_0_0_0_0_0_7 MATURE 7 2.86 0 0.00 7 3.78 19A4
................................................AGCTACATCTGGCTACTGGaTCTt........ 37999_2_0_0_0_0_4 MATURE 6 2.45 2 3.33 4 2.16 19A3
................................................AGCTACATCTGGCTACTGGGTCT......... 33292_3_0_0_0_0_2 MATURE 5 2.04 3 5.00 2 1.08 23
.................................................GCTACATCTGGCTACTGGGTCTCTt...... 226_0_0_0_0_0_5 MATURE 5 2.04 0 0.00 5 2.70 24
................................................AGCTACATCTGGCTACTGGGTCTa........ 10528_0_0_0_0_0_5 MATURE 5 2.04 0 0.00 5 2.70 23
................................................AGCTACATCTGGCTACTGGaTCTa........ 13384_1_0_0_0_0_4 MATURE 5 2.04 1 1.67 4 2.16 19A3
................................................AGCTACATCTGGCTACTGGGTCTt........ 18832_4_0_0_0_0_1 MATURE 5 2.04 4 6.67 1 0.54 23
................................................AGCTACATCTGGCTACTGGaTCT......... 30285_2_0_0_0_0_3 MATURE 5 2.04 2 3.33 3 1.62 19A3
..............................................GCAGCTACATCTGGCTACTaGGT........... 39916_3_0_0_0_0_1 MATURE 4 1.63 3 5.00 1 0.54 19A3
................................................AGCTACATCTGGCTACTGtGTCTC........ 7535_1_0_0_0_0_3 MATURE 4 1.63 1 1.67 3 1.62 18T5
................................................AGCTACATCTGGCTACTGGGTCaCT....... 10100_2_0_0_0_0_1 MATURE 3 1.22 2 3.33 1 0.54 22A2
................................................AGCTACATCTGGCTACTGGcTCTCT....... 17673_0_0_0_0_0_3 MATURE 3 1.22 0 0.00 3 1.62 19C5
................................................AGCTACATCTGGCTACTaGGTCT......... 33883_0_0_0_0_0_3 MATURE 3 1.22 0 0.00 3 1.62 17A5
................................................AGCTACATCTGGCTACTGaGTCa......... 25960_0_0_0_0_0_3 MATURE 3 1.22 0 0.00 3 1.62 18A3
................................................AGCTACATCTGGCTACTGGGTCcCT....... 40579_1_0_0_0_0_2 MATURE 3 1.22 1 1.67 2 1.08 22C2
................................................AGCTACATCTGGCTACTGcGTCTa........ 43471_1_0_0_0_0_1 MATURE 2 0.82 1 1.67 1 0.54 18C4
...............................................CAGCTACATCTGGCTACTGGGTCTt........ 30868_0_0_0_0_0_2 MATURE 2 0.82 0 0.00 2 1.08 24
..............................................GCAGCTACATCTGGCTAaTGGGT........... 539_2_0_0_0_0_0 MATURE 2 0.82 2 3.33 0 0.00 17A5
................................................AGCTACATCTGGCTACTGGGTtTC........ 34092_0_0_0_0_0_2 MATURE 2 0.82 0 0.00 2 1.08 21T2
................................................AGCTACATCTGGCTACTaGGTCa......... 21658_1_0_0_0_0_1 MATURE 2 0.82 1 1.67 1 0.54 17A4
.................................................GCTACATCTGGCTACTGGGTCTCTa...... 26348_0_0_0_0_0_2 MATURE 2 0.82 0 0.00 2 1.08 24
................................................AGCTACATCTGGCTACTGGGT........... 28474_0_0_0_0_0_2 MATURE 2 0.82 0 0.00 2 1.08 21
................................................AGCTACATCTGGCTACTGGGTaTCT....... 7170_0_0_0_0_0_2 MATURE 2 0.82 0 0.00 2 1.08 21A3
..............................................GCAGCTACATCTGGCTACTGGa............ 25787_0_0_0_0_0_2 MATURE 2 0.82 0 0.00 2 1.08 21
.............................................AGCAGCTACATCTGGCTACTGGGT........... 1430_2_0_0_0_0_0 MATURE 2 0.82 2 3.33 0 0.00 24
.................................................GCTACATCTGGCTACTGGGaCTCTt...... 4147_0_0_0_0_0_2 MATURE 2 0.82 0 0.00 2 1.08 19A4
..............................................GCAGCTACATCTGGCTACTGGGTCT......... 39692_1_0_0_0_0_1 MATURE 2 0.82 1 1.67 1 0.54 25
................................................AGCTACATCTGGCTACTGGtTCTCT....... 22147_0_0_0_0_0_2 MATURE 2 0.82 0 0.00 2 1.08 19T5
................................................AGCTACATCTGGCTACTGGtTCT......... 18918_0_0_0_0_0_2 MATURE 2 0.82 0 0.00 2 1.08 19T3
................................................AGCTACATCTGGCTACTGGGcCT......... 12066_1_0_0_0_0_0 MATURE 1 0.41 1 1.67 0 0.00 20C2
.............................................AGCAGCTACATCTGGCTACgGGGT........... 27247_1_0_0_0_0_0 MATURE 1 0.41 1 1.67 0 0.00 19G4
.............................................AGCAGCTACATCTGGCTACcGGt............ 32976_0_0_0_0_0_1 MATURE 1 0.41 0 0.00 1 0.54 19C2
...............................................CAGCTACATCTGGCTACTGaGTCTC........ 14337_0_0_0_0_0_1 MATURE 1 0.41 0 0.00 1 0.54 19A5
................................................AGCTACATCTGGCTACTGcGTCTt........ 13297_0_0_0_0_0_1 MATURE 1 0.41 0 0.00 1 0.54 18C4
................................................AGCTACATCTGGCTACTGaGTCTa........ 36472_0_0_0_0_0_1 MATURE 1 0.41 0 0.00 1 0.54 18A4
................................................AGCTACATCTGGCTACTaGGTt.......... 1407_1_0_0_0_0_0 MATURE 1 0.41 1 1.67 0 0.00 17A3
................................................AGCTACATCTGGCTACTGGGTCc......... 16333_0_0_0_0_0_1 MATURE 1 0.41 0 0.00 1 0.54 22
..............................................GCAGCTACATCTGGCTACcGGGTt.......... 37201_1_0_0_0_0_0 MATURE 1 0.41 1 1.67 0 0.00 18C4
.............................................AGCAGCTACATCTGGCTACTGGG............ 38593_0_0_0_0_0_1 MATURE 1 0.41 0 0.00 1 0.54 23
................................................AGCTACATCTGGCTACTGGGaCTt........ 30944_0_0_0_0_0_1 MATURE 1 0.41 0 0.00 1 0.54 20A2
...............................................CAGCTACATCTGGCTACTGGGTCTa........ 20386_0_0_0_0_0_1 MATURE 1 0.41 0 0.00 1 0.54 24
................................................AGCTACATCTGGCTACTGGG............ 23872_0_0_0_0_0_1 MATURE 1 0.41 0 0.00 1 0.54 20
..............................................GCAGCTACATCTGGCTACcGG............. 27276_1_0_0_0_0_0 MATURE 1 0.41 1 1.67 0 0.00 18C2
................................................AGCTACATCTGGCTACTGGtTCTC........ 35795_0_0_0_0_0_1 MATURE 1 0.41 0 0.00 1 0.54 19T4
................................................AGCTACATCTGGCTACTGGtTCTa........ 13697_0_0_0_0_0_1 MATURE 1 0.41 0 0.00 1 0.54 19T3
................................................AGCTACATCTGGCTACTGGGcCTCc....... 41286_1_0_0_0_0_0 MATURE 1 0.41 1 1.67 0 0.00 20C3
................................................AGCTACATCTGGCTACTGGGTCTg........ 29329_0_0_0_0_0_1 MATURE 1 0.41 0 0.00 1 0.54 23
................................................AGCTACATCTGGCTACTGaGTCTt........ 3961_0_0_0_0_0_1 MATURE 1 0.41 0 0.00 1 0.54 18A4
................................................AGCTACATCTGGCTACTGcGTCTC........ 19762_0_0_0_0_0_1 MATURE 1 0.41 0 0.00 1 0.54 18C5
................................................AGCTACATCTGGCTACTGGGaCTa........ 224_0_0_0_0_0_1 MATURE 1 0.41 0 0.00 1 0.54 20A2
................................................AGCTACATCTGGCTACTaGGTCc......... 35297_0_0_0_0_0_1 MATURE 1 0.41 0 0.00 1 0.54 17A4
................................................AGCTACATCTGGCTACTGGGTCTCg....... 25484_0_0_0_0_0_1 MATURE 1 0.41 0 0.00 1 0.54 24
..............................................GCAGCTACATCTGGCTACTGtGTCg......... 12091_0_0_0_0_0_1 MATURE 1 0.41 0 0.00 1 0.54 20T3
..............................................GCAGCTACATCTGGCTAtTGGGT........... 34780_0_0_0_0_0_1 MATURE 1 0.41 0 0.00 1 0.54 17T5
..............................................GCAGCTACATCTGGCTACTGGG............ 1787_0_0_0_0_0_1 MATURE 1 0.41 0 0.00 1 0.54 22
..............................................GCAGCTACATCTGGCTACgGGa............ 42557_0_0_0_0_0_1 MATURE 1 0.41 0 0.00 1 0.54 18G2
..............................................GCAGCTACATCTGGCTACTGGGT........... 22345_0_0_0_0_0_1 MATURE 1 0.41 0 0.00 1 0.54 23
..................................................CTACATCTGGCTACTGGtTCTCa....... 26302_1_0_0_0_0_0 MATURE 1 0.41 1 1.67 0 0.00 17T4
................................................AGCTACATCTGGCTACTGGt............ 24055_0_0_0_0_0_1 MATURE 1 0.41 0 0.00 1 0.54 19
.................................................GCTACATCTGGCTACTGGGTCT......... 18604_1_0_0_0_0_0 MATURE 1 0.41 1 1.67 0 0.00 22
................................................AGCTACATCTGGCTACTGGGTtTCT....... 41620_0_0_0_0_0_1 MATURE 1 0.41 0 0.00 1 0.54 21T3
................................................AGCTACATCTGGCTACTGGcTCTC........ 8944_0_0_0_0_0_1 MATURE 1 0.41 0 0.00 1 0.54 19C4
.................................................GCTACATCTGGCTACTGGGTtTCTt...... 31611_0_0_0_0_0_1 MATURE 1 0.41 0 0.00 1 0.54 20T3
................................................AGCTACATCTGGCTACTGGaTCTCc....... 43810_0_0_0_0_0_1 MATURE 1 0.41 0 0.00 1 0.54 19A4
................................................AGCTACATCTGGCTACTGGGaCTCa....... 39636_1_0_0_0_0_0 MATURE 1 0.41 1 1.67 0 0.00 20A3
................................................AGCTACATCTGGCTACTGGcTCTCa....... 13193_0_0_0_0_0_1 MATURE 1 0.41 0 0.00 1 0.54 19C4
..............................................GCAGCTACATCTGGCTACcGGGT........... 42043_0_0_0_0_0_1 MATURE 1 0.41 0 0.00 1 0.54 18C4
.................................................GCTACATCTGGCTACTGGGcCTC........ 30437_0_0_0_0_0_1 MATURE 1 0.41 0 0.00 1 0.54 19C3
................................................AGCTACATCTGGCTACTGGtTCTCa....... 12944_0_0_0_0_0_1 MATURE 1 0.41 0 0.00 1 0.54 19T4
................................................AGCTACATCTGGCTACTGGGTC.......... 22324_0_0_0_0_0_1 MATURE 1 0.41 0 0.00 1 0.54 22
................................................AGCTACATCTGGCTACTGGGgCTCc....... 23364_0_0_0_0_0_1 MATURE 1 0.41 0 0.00 1 0.54 20G3
................................................AGCTACATCTGGCTACTGGGTCTCc....... 41319_0_0_0_0_0_1 MATURE 1 0.41 0 0.00 1 0.54 24
.............................................AGCAGCTACATCTGGCTACaGGGT........... 3994_1_0_0_0_0_0 MATURE 1 0.41 1 1.67 0 0.00 19A4
.............................................AGCAGCTACATCTGGCTACTGGGa........... 23835_1_0_0_0_0_0 MATURE 1 0.41 1 1.67 0 0.00 23
..............................................GCAGCTACATCTGGCTACTGaGT........... 12566_0_0_0_0_0_1 MATURE 1 0.41 0 0.00 1 0.54 20A2
..............................................GCAGCTACATCTGGCTtCTGG............. 38686_0_0_0_0_0_1 MATURE 1 0.41 0 0.00 1 0.54 16T4
................................................AGCTACATCTGGCTACTGGGaCTC........ 2861_0_0_0_0_0_1 MATURE 1 0.41 0 0.00 1 0.54 20A3
.............................................AGCAGCTACATCTGGCTACTGGGTt.......... 19339_0_0_0_0_0_1 MATURE 1 0.41 0 0.00 1 0.54 24
..............................................GCAGCTACATCTGGCTACTGG............. 3899_1_0_0_0_0_0 MATURE 1 0.41 1 1.67 0 0.00 21
..............................................GCAGCTACATCTGGCTcCTGGG............ 6460_0_0_0_0_0_1 MATURE 1 0.41 0 0.00 1 0.54 16C5
................................................AGCTACATCTGGCTACTGGGTgTC........ 22822_0_0_0_0_0_1 MATURE 1 0.41 0 0.00 1 0.54 21G2
................................................AGCTACATCTGGCTACTGGGTCa......... 37430_0_0_0_0_0_1 MATURE 1 0.41 0 0.00 1 0.54 22
---------- ---------- ----------
245 60 185
(24.49) (75.51)
*** OTHER ***
_______________________________________________________________________________
CCCTCAGTGGCTCAGTAGCCAGTGTAGATCCTGTCTTTGGTAATCAGCAGCTACATCTGGCTACTGGGTCTCTGGTGGC REF X 18724019 - 18724097
AGCTACATCTGGCTACTGGGT MATURE X 18724068 - 18724166 mmu-miR-222 -
_______________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
........GGCTCAGTAGCCAGTGTAGATCC................................................. 41024_0_0_0_0_0_2 OTHER 2 16.67 0 0.00 2 20.00 23
........GGCTCAGTAGCCAGTGTAGAT................................................... 4711_1_0_0_0_0_0 OTHER 1 8.33 1 50.00 0 0.00 21
.........GCTCAGTAGCCAGTGTAGATCC................................................. 26323_0_0_0_0_0_1 OTHER 1 8.33 0 0.00 1 10.00 22
........GGCTCAGTAGCCAGTGTAGAaCC................................................. 40859_0_0_0_0_0_1 OTHER 1 8.33 0 0.00 1 10.00 20A2
...........TCAGTAGCCAGTGTAGAaCCTGT.............................................. 8607_0_0_0_0_0_1 OTHER 1 8.33 0 0.00 1 10.00 17A5
........GGCTCAGTAGCCAGTGTAGATC.................................................. 25872_0_0_0_0_0_1 OTHER 1 8.33 0 0.00 1 10.00 22
........GGCTCAGTAGCCAGTGTAGAgCC................................................. 29072_0_0_0_0_0_1 OTHER 1 8.33 0 0.00 1 10.00 20G2
...........TCAGTAGCCAGTGTAGATtCTGT.............................................. 43192_0_0_0_0_0_1 OTHER 1 8.33 0 0.00 1 10.00 18T4
...........TCAGTAGCCAGTGTAGATCCTGTa............................................. 42425_1_0_0_0_0_0 OTHER 1 8.33 1 50.00 0 0.00 23
.........GCTCAGTAGCCAGTGTAGATCCTa............................................... 14452_0_0_0_0_0_1 OTHER 1 8.33 0 0.00 1 10.00 23
...........TCAGTAGCCAGTGTAGATaCTGT.............................................. 18814_0_0_0_0_0_1 OTHER 1 8.33 0 0.00 1 10.00 18A4
---------- ---------- ----------
12 2 10
(16.67) (83.33)
((( SUMMARY )))
-CAT- -REST- -ACT- -TOTAL- -TOTAL%-
---------- ---------- ---------- ---------- ----------
MATURE 60 185 245 95.33%
OTHER 2 10 12 4.67%
---------- ---------- ----------
62 195 257
[END]