[BEGIN]
REFERENCE HAIRPIN
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ID : mmu-mir-219-1
DESCRIPTION : mmu-mir-219-1 MI0000702 Mus musculus miR-219-1 stem-loop
CHROMOSOME : 17
SPAN : 34161928 - 34162037
LENGTH : 110
SEQUENCE : CCGTCCCGGGCCGCGGCTCCTGATTGTCCAAACGCAATTCTCGAGTCTCTGGCTCCGGCCGAGAGTTGCGTCTGGACGTCCCGAGCCGCCGCCCCCAAACCTCGAGGGGG
OVERHANG THRESHOLD : 40%
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TARGET
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CATEGORY : MATURE
ID : mmu-miR-219
ACCID : MI0000702
PARENT : mmu-mir-219-1
CHROMOSOME : 17
START : 34161928
STOP : 34162037
OFFSET : 21..41
SEQUENCE : TGATTGTCCAAACGCAATTCT
STRAND : -
******************************
*** MATURE ***
______________________________________________________________________________________________________________
CCGTCCCGGGCCGCGGCTCCTGATTGTCCAAACGCAATTCTCGAGTCTCTGGCTCCGGCCGAGAGTTGCGTCTGGACGTCCCGAGCCGCCGCCCCCAAACCTCGAGGGGG REF 17 34161928 - 34162037
TGATTGTCCAAACGCAATTCT MATURE 17 34161949 - 34162078 mmu-miR-219 -
______________________________________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
....................TGATTGTCCAAACGCAATTCTCG.................................................................... 31694_6_0_0_0_0_6 MATURE 12 31.58 6 31.58 6 31.58 23
....................TGATTGTCCAAACGCAATcCTCG.................................................................... 10078_2_0_0_0_0_2 MATURE 4 10.53 2 10.53 2 10.53 18C4
....................TGATTGTCCAAACGCAATaCTCG.................................................................... 33256_3_0_0_0_0_1 MATURE 4 10.53 3 15.79 1 5.26 18A4
....................TGATTGTCCAAACGCAAaTCTCG.................................................................... 42446_2_0_0_0_0_2 MATURE 4 10.53 2 10.53 2 10.53 17A5
....................TGtTTGTCCAAACGCAATTCTCG.................................................................... 15206_1_0_0_0_0_3 MATURE 4 10.53 1 5.26 3 15.79 2T20
....................TGATTGTCCAAACGCAAgTCTCG.................................................................... 42593_1_0_0_0_0_2 MATURE 3 7.89 1 5.26 2 10.53 17G5
....................TGATTGTCCAAACGCAATTCTCGt................................................................... 39149_2_0_0_0_0_0 MATURE 2 5.26 2 10.53 0 0.00 23
....................TGATTGTCCAAACGCAATcCTCGA................................................................... 30434_1_0_0_0_0_1 MATURE 2 5.26 1 5.26 1 5.26 18C5
....................TGATTGTCCAAACGCAATTCTCGA................................................................... 24134_0_0_0_0_0_1 MATURE 1 2.63 0 0.00 1 5.26 24
....................TGATTGTCCAAACGCAATgCTCG.................................................................... 12614_0_0_0_0_0_1 MATURE 1 2.63 0 0.00 1 5.26 18G4
....................TGATTGTCCAAACGCAAaTCTC..................................................................... 28172_1_0_0_0_0_0 MATURE 1 2.63 1 5.26 0 0.00 17A4
---------- ---------- ----------
38 19 19
(50.00) (50.00)
((( SUMMARY )))
-CAT- -REST- -ACT- -TOTAL- -TOTAL%-
---------- ---------- ---------- ---------- ----------
MATURE 19 19 38 100.00%
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19 19 38
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