[BEGIN]
REFERENCE HAIRPIN
*****************************************************************************************************
ID : mmu-mir-20b
DESCRIPTION : mmu-mir-20b MI0003536 Mus musculus miR-20b stem-loop
CHROMOSOME : X
SPAN : 50095290 - 50095369
LENGTH : 80
SEQUENCE : CCTAGTAGTGCCAAAGTGCTCATAGTGCAGGTAGTTTTTATACCACTCTACTGCAGTGTGAGCACTTCTAGTACTCCTGG
OVERHANG THRESHOLD : 40%
*****************************************************************************************************
TARGET
******************************
CATEGORY : MATURE
ID : mmu-miR-20b
ACCID : MI0003536
PARENT : mmu-mir-20b
CHROMOSOME : X
START : 50095290
STOP : 50095369
OFFSET : 12..34
SEQUENCE : CAAAGTGCTCATAGTGCAGGTAG
STRAND : -
******************************
TARGET
******************************
CATEGORY : MATURESTAR
ID : mmu-miR-20b*
ACCID : MI0003536
PARENT : mmu-mir-20b
CHROMOSOME : X
START : 50095290
STOP : 50095369
OFFSET : 50..71
SEQUENCE : ACTGCAGTGTGAGCACTTCTAG
STRAND : -
******************************
*** MATURE ***
________________________________________________________________________________
CCTAGTAGTGCCAAAGTGCTCATAGTGCAGGTAGTTTTTATACCACTCTACTGCAGTGTGAGCACTTCTAGTACTCCTGG REF X 50095290 - 50095369
CAAAGTGCTCATAGTGCAGGTAG MATURE X 50095302 - 50095403 mmu-miR-20b -
ACTGCAGTGTGAGCACTTCTAG MATURESTAR X 50095340 - 50095440 mmu-miR-20b* -
________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
...........CAAAGTGCTCATAGTGCAaGTAG............................................... 43958_9_0_0_0_0_24 MATURE 33 12.45 9 8.33 24 15.29 18A4
...........CAAAGTGCTCATAGTGCAGaTAt............................................... 40849_12_0_0_0_0_12 MATURE 24 9.06 12 11.11 12 7.64 19A2
...........CAAAGTGCTCATAGTGCAGaTAG............................................... 39947_6_0_0_0_0_17 MATURE 23 8.68 6 5.56 17 10.83 19A3
...........CAAAGTGCTCATAGTGCAGGTAt............................................... 33075_12_0_0_0_0_10 MATURE 22 8.30 12 11.11 10 6.37 22
...........CAAAGTGCTCATAGTGCAaGTAt............................................... 39108_6_0_0_0_0_9 MATURE 15 5.66 6 5.56 9 5.73 18A3
...........CAAAGTGCTCATAGTGCAaGT................................................. 39036_10_0_0_0_0_4 MATURE 14 5.28 10 9.26 4 2.55 18A2
...........CAAAGTGCTCATAGTGCAtGTAG............................................... 28637_1_0_0_0_0_7 MATURE 8 3.02 1 0.93 7 4.46 18T4
...........CAAAGTGCTCATAGTGCAGaTAGT.............................................. 38042_3_0_0_0_0_4 MATURE 7 2.64 3 2.78 4 2.55 19A4
...........CAAAGTGCTCATAGTGCAaGTA................................................ 41998_3_0_0_0_0_4 MATURE 7 2.64 3 2.78 4 2.55 18A3
...........CAAAGTGCTCATAGTGCAGGT................................................. 29411_3_0_0_0_0_4 MATURE 7 2.64 3 2.78 4 2.55 21
...........CAAAGTGCTCATAGTGCAGtTAG............................................... 37930_3_0_0_0_0_3 MATURE 6 2.26 3 2.78 3 1.91 19T3
...........CAAAGTGCTCATAGTGCAtGTAt............................................... 43166_3_0_0_0_0_2 MATURE 5 1.89 3 2.78 2 1.27 18T3
...........CAAAGTGCTCATAGTGCAGGTAG............................................... 44174_1_0_0_0_0_4 MATURE 5 1.89 1 0.93 4 2.55 23
...........CAAAGTGCTCATAGTGCAcGTAGT.............................................. 38546_2_0_0_0_0_3 MATURE 5 1.89 2 1.85 3 1.91 18C5
...........CAAAGTGCTCATAGTGCAGaTA................................................ 35080_1_0_0_0_0_3 MATURE 4 1.51 1 0.93 3 1.91 19A2
...........CAAAGTGCTCATAGTGCAGtTAt............................................... 24770_1_0_0_0_0_3 MATURE 4 1.51 1 0.93 3 1.91 19T2
...........CAAAGTGCTCATAGTGCtGGTAG............................................... 44071_0_0_0_0_0_4 MATURE 4 1.51 0 0.00 4 2.55 17T5
...........CAAAGTGCTCATAGTGCAGaTAGa.............................................. 20930_1_0_0_0_0_3 MATURE 4 1.51 1 0.93 3 1.91 19A3
...........CAAAGTGCTCATAGTGCAGGTA................................................ 39715_2_0_0_0_0_2 MATURE 4 1.51 2 1.85 2 1.27 22
............AAAGTGCTCATAGTGCAGaTAt............................................... 32276_3_0_0_0_0_0 MATURE 3 1.13 3 2.78 0 0.00 18A2
...........CAAAGTGCTCATAGTGCAG................................................... 41718_2_0_0_0_0_1 MATURE 3 1.13 2 1.85 1 0.64 19
...........CAAAGTGCTCATAGTGCAaGTAGT.............................................. 21354_1_0_0_0_0_2 MATURE 3 1.13 1 0.93 2 1.27 18A5
...........CAAAGTGCTCATAGTGCAaGTAGa.............................................. 34310_1_0_0_0_0_2 MATURE 3 1.13 1 0.93 2 1.27 18A4
...........CAAAGTGCTCATAGTGCAGtTA................................................ 31253_1_0_0_0_0_2 MATURE 3 1.13 1 0.93 2 1.27 19T2
...........CAAAGTGCTCATAGTGCAcGTAt............................................... 40008_1_0_0_0_0_2 MATURE 3 1.13 1 0.93 2 1.27 18C3
............AAAGTGCTCATAGTGCAaGTAt............................................... 25465_2_0_0_0_0_0 MATURE 2 0.75 2 1.85 0 0.00 17A3
...........CAAAGTGCTCATAGTGCAGaTAa............................................... 44270_1_0_0_0_0_1 MATURE 2 0.75 1 0.93 1 0.64 19A2
...........CAAAGTGCTCATAGTGCAcGTAG............................................... 18186_1_0_0_0_0_1 MATURE 2 0.75 1 0.93 1 0.64 18C4
..........CCAAAGTGCTCATAGTGCAGGTAa............................................... 37951_1_0_0_0_0_1 MATURE 2 0.75 1 0.93 1 0.64 23
............AAAGTGCTCATAGTGCAGaTAG............................................... 33715_0_0_0_0_0_2 MATURE 2 0.75 0 0.00 2 1.27 18A3
...........CAAAGTGCTCATAGTGCAGt.................................................. 37205_1_0_0_0_0_1 MATURE 2 0.75 1 0.93 1 0.64 19
..........CCAAAGTGCTCATAGTGCAGGTAt............................................... 13750_1_0_0_0_0_1 MATURE 2 0.75 1 0.93 1 0.64 23
...........CAAAGTGCTCATAGTGCAaGTt................................................ 24677_1_0_0_0_0_1 MATURE 2 0.75 1 0.93 1 0.64 18A2
...........CAAAGTGCTCATAGTGCAGtTAGT.............................................. 32081_0_0_0_0_0_1 MATURE 1 0.38 0 0.00 1 0.64 19T4
...........CAAAGTGCTCATAGTGCcGGTAt............................................... 36902_0_0_0_0_0_1 MATURE 1 0.38 0 0.00 1 0.64 17C4
............AAAGTGCTCATAGTGCAaGTAa............................................... 394_1_0_0_0_0_0 MATURE 1 0.38 1 0.93 0 0.00 17A3
..........CCAAAGTGCTCATAGTGtAGGTA................................................ 15732_1_0_0_0_0_0 MATURE 1 0.38 1 0.93 0 0.00 17T5
...........CAAAGTGCTCATAGTGtAGGT................................................. 42256_1_0_0_0_0_0 MATURE 1 0.38 1 0.93 0 0.00 16T4
...........CAAAGTGCTCATAGTaCAGGT................................................. 2334_0_0_0_0_0_1 MATURE 1 0.38 0 0.00 1 0.64 15A5
............AAAGTGCTCATAGTGCAGaTAa............................................... 16464_1_0_0_0_0_0 MATURE 1 0.38 1 0.93 0 0.00 18A2
...........CAAAGTGCTCATAGTGtAGGTA................................................ 13369_1_0_0_0_0_0 MATURE 1 0.38 1 0.93 0 0.00 16T5
.............AAGTGCTCATAGTGCAGGTAa............................................... 1920_0_0_0_0_0_1 MATURE 1 0.38 0 0.00 1 0.64 20
.........GCCAAAGTGCTCATAGTGaAGGT................................................. 28406_0_0_0_0_0_1 MATURE 1 0.38 0 0.00 1 0.64 18A4
...........CAAAGTGCTCATAGTGCAGtTAGTg............................................. 33691_1_0_0_0_0_0 MATURE 1 0.38 1 0.93 0 0.00 19T4
...........CAAAGTGCTCATAGTGCAaGTg................................................ 11187_1_0_0_0_0_0 MATURE 1 0.38 1 0.93 0 0.00 18A2
...........CAAAGTGCTCATAGTGCAGGTAGa.............................................. 41387_0_0_0_0_0_1 MATURE 1 0.38 0 0.00 1 0.64 23
..........CCAAAGTGCTCATAGTGCcGGTAt............................................... 7505_0_0_0_0_0_1 MATURE 1 0.38 0 0.00 1 0.64 18C4
.............AAGTGCTCATAGTGCAaGTAG............................................... 29213_0_0_0_0_0_1 MATURE 1 0.38 0 0.00 1 0.64 16A4
...........CAAAtTGCTCATAGTGCAGGTAt............................................... 11086_0_0_0_0_0_1 MATURE 1 0.38 0 0.00 1 0.64 4T17
...........CAAAGTGCTCATAGTGCAGGTt................................................ 9210_1_0_0_0_0_0 MATURE 1 0.38 1 0.93 0 0.00 21
..........CCAAAGTGCTCATAGTaCAGGa................................................. 9166_0_0_0_0_0_1 MATURE 1 0.38 0 0.00 1 0.64 16A4
..........CCAAAGTGCTCATAGTGCAGaTAt............................................... 20403_0_0_0_0_0_1 MATURE 1 0.38 0 0.00 1 0.64 20A2
...........CAAAGTGCTCATAGTGCAGa.................................................. 32696_1_0_0_0_0_0 MATURE 1 0.38 1 0.93 0 0.00 19
............AAAGTGCTCATAGTGCAtGTAG............................................... 28840_1_0_0_0_0_0 MATURE 1 0.38 1 0.93 0 0.00 17T4
...........CAAAGTGCTCATAGTGaAGGTA................................................ 6476_0_0_0_0_0_1 MATURE 1 0.38 0 0.00 1 0.64 16A5
............AAAGTGCTCATAGTGCAGGTAa............................................... 21310_0_0_0_0_0_1 MATURE 1 0.38 0 0.00 1 0.64 21
...........CAAAGTGCTCATAGTGCtGGTAt............................................... 35001_0_0_0_0_0_1 MATURE 1 0.38 0 0.00 1 0.64 17T4
.............AAGTGCTCATAGTGCAGaTAGa.............................................. 8506_1_0_0_0_0_0 MATURE 1 0.38 1 0.93 0 0.00 17A3
...........CAAAGTGCTCATAGTGCAGaTAGTT............................................. 23138_0_0_0_0_0_1 MATURE 1 0.38 0 0.00 1 0.64 19A5
...........CAAAGTGCTCATAGTGCAGcTAGTa............................................. 29160_0_0_0_0_0_1 MATURE 1 0.38 0 0.00 1 0.64 19C4
...........CAAAGTGCTCATAGTGCAaGTAGg.............................................. 1039_0_0_0_0_0_1 MATURE 1 0.38 0 0.00 1 0.64 18A4
...........CAAAGTGCTCATAGTGCAGcTAt............................................... 25106_0_0_0_0_0_1 MATURE 1 0.38 0 0.00 1 0.64 19C2
...........CAAAGTGCTCATAGTGCAGGa................................................. 24694_1_0_0_0_0_0 MATURE 1 0.38 1 0.93 0 0.00 20
---------- ---------- ----------
265 108 157
(40.75) (59.25)
*** MATURESTAR ***
________________________________________________________________________________
CCTAGTAGTGCCAAAGTGCTCATAGTGCAGGTAGTTTTTATACCACTCTACTGCAGTGTGAGCACTTCTAGTACTCCTGG REF X 50095290 - 50095369
CAAAGTGCTCATAGTGCAGGTAG MATURE X 50095302 - 50095403 mmu-miR-20b -
ACTGCAGTGTGAGCACTTCTAG MATURESTAR X 50095340 - 50095440 mmu-miR-20b* -
________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
.....................................................CAGTGTGAGCACTTCTAGT......... 34611_0_0_0_0_0_2 MATURESTAR 2 28.57 0 0.00 2 50.00 19
..................................................CTGCAGTGTGAGCACTTCTAGT......... 2581_1_0_0_0_0_1 MATURESTAR 2 28.57 1 33.33 1 25.00 22
.................................................ACTGCAGTGTGgGCACTTCTAGc......... 30584_0_0_0_0_0_1 MATURESTAR 1 14.29 0 0.00 1 25.00 11G10
..................................................CTGCAGgGTGAGCACTTCTAGTt........ 42720_1_0_0_0_0_0 MATURESTAR 1 14.29 1 33.33 0 0.00 6G15
..................................................CTGCAGTGTGAGCACTTCTAGTA........ 42004_1_0_0_0_0_0 MATURESTAR 1 14.29 1 33.33 0 0.00 23
---------- ---------- ----------
7 3 4
(42.86) (57.14)
((( SUMMARY )))
-CAT- -REST- -ACT- -TOTAL- -TOTAL%-
---------- ---------- ---------- ---------- ----------
MATURE 108 157 265 97.43%
MATURESTAR 3 4 7 2.57%
---------- ---------- ----------
111 161 272
[END]