[BEGIN]
REFERENCE HAIRPIN
*************************************************************************************************
ID : mmu-mir-203
DESCRIPTION : mmu-mir-203 MI0000246 Mus musculus miR-203 stem-loop
CHROMOSOME : 12
SPAN : 113369091 - 113369166
LENGTH : 76
SEQUENCE : GCCTGGTCCAGTGGTTCTTGACAGTTCAACAGTTCTGTAGCACAATTGTGAAATGTTTAGGACCACTAGACCCGGC
OVERHANG THRESHOLD : 40%
*************************************************************************************************
TARGET
******************************
CATEGORY : MATURE
ID : mmu-miR-203
ACCID : MI0000246
PARENT : mmu-mir-203
CHROMOSOME : 12
START : 113369091
STOP : 113369166
OFFSET : 48..69
SEQUENCE : GTGAAATGTTTAGGACCACTAG
STRAND : +
******************************
TARGET
******************************
CATEGORY : MATURESTAR
ID : mmu-miR-203*
ACCID : MI0000246
PARENT : mmu-mir-203
CHROMOSOME : 12
START : 113369091
STOP : 113369166
OFFSET : 10..31
SEQUENCE : AGTGGTTCTTGACAGTTCAACA
STRAND : +
******************************
*** MATURE ***
____________________________________________________________________________
GCCTGGTCCAGTGGTTCTTGACAGTTCAACAGTTCTGTAGCACAATTGTGAAATGTTTAGGACCACTAGACCCGGC REF 12 113369091 - 113369166
GTGAAATGTTTAGGACCACTAG MATURE 12 113369139 - 113369235 mmu-miR-203 +
AGTGGTTCTTGACAGTTCAACA MATURESTAR 12 113369101 - 113369197 mmu-miR-203* +
____________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
...............................................GTGAAATGTTTAGGACaACTAG........ 30491_1_0_0_0_0_2 MATURE 3 10.71 1 6.67 2 15.38 16A5
..............................................TGTGAAATGTTTAGGACCACTAG........ 28758_1_0_0_0_0_2 MATURE 3 10.71 1 6.67 2 15.38 23
..............................................TGTGAAATGTTTAGGACtACTAG........ 41999_1_0_0_0_0_1 MATURE 2 7.14 1 6.67 1 7.69 17T5
...............................................GTGAAATGTTTAGGACCACTAG........ 30231_2_0_0_0_0_0 MATURE 2 7.14 2 13.33 0 0.00 22
..............................................TGTGAAATGTTTAGGACCACTAt........ 22031_1_0_0_0_0_1 MATURE 2 7.14 1 6.67 1 7.69 22
...............................................GTGAAATGTTTAGGACCACTAt........ 36080_1_0_0_0_0_1 MATURE 2 7.14 1 6.67 1 7.69 21
...............................................GTGAAATGTTTAGGACCACTAGA....... 6566_0_0_0_0_0_1 MATURE 1 3.57 0 0.00 1 7.69 23
..............................................TGTGAAATGTTTAGGACCgCTAG........ 5265_1_0_0_0_0_0 MATURE 1 3.57 1 6.67 0 0.00 18G4
..............................................TGTGAAATGTTTAGGACaACTAG........ 32564_0_0_0_0_0_1 MATURE 1 3.57 0 0.00 1 7.69 17A5
..............................................TGTGAAATGTTTAGGACCACTA......... 14220_1_0_0_0_0_0 MATURE 1 3.57 1 6.67 0 0.00 22
...............................................GTGAAATGTTTAGGACCACTAa........ 23172_1_0_0_0_0_0 MATURE 1 3.57 1 6.67 0 0.00 21
..............................................TGTGAAATGTTTAGGACCACcAGAg...... 27101_0_0_0_0_0_1 MATURE 1 3.57 0 0.00 1 7.69 20C3
.................................................GAAATGTTTAGGACCACTAG........ 34853_1_0_0_0_0_0 MATURE 1 3.57 1 6.67 0 0.00 20
...........................................AATgGTGAAATGTTTAGGACCACc.......... 14882_1_0_0_0_0_0 MATURE 1 3.57 1 6.67 0 0.00 3G19
................................................TGAAATGTTTAGGACCACT.......... 7412_0_0_0_0_0_1 MATURE 1 3.57 0 0.00 1 7.69 19
................................................TGAAATGTTTAGGACCACTAGt....... 40984_1_0_0_0_0_0 MATURE 1 3.57 1 6.67 0 0.00 21
...............................................GTGAAATGTTTAGGACCcCTAG........ 7399_1_0_0_0_0_0 MATURE 1 3.57 1 6.67 0 0.00 17C4
...............................................GTGAAATGTTTAGGACCACTt......... 33225_0_0_0_0_0_1 MATURE 1 3.57 0 0.00 1 7.69 20
............................................ATgGTGAAATGTTTAGGACCACTAG........ 37487_1_0_0_0_0_0 MATURE 1 3.57 1 6.67 0 0.00 2G22
..............................................TGTGAAATGTTTAGGACgACTAG........ 16713_0_0_0_0_0_1 MATURE 1 3.57 0 0.00 1 7.69 17G5
---------- ---------- ----------
28 15 13
(53.57) (46.43)
*** MATURESTAR ***
____________________________________________________________________________
GCCTGGTCCAGTGGTTCTTGACAGTTCAACAGTTCTGTAGCACAATTGTGAAATGTTTAGGACCACTAGACCCGGC REF 12 113369091 - 113369166
GTGAAATGTTTAGGACCACTAG MATURE 12 113369139 - 113369235 mmu-miR-203 +
AGTGGTTCTTGACAGTTCAACA MATURESTAR 12 113369101 - 113369197 mmu-miR-203* +
____________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
.........AGTGGTTCTTGACAGTTCAACAG............................................. 10040_1_0_0_0_0_0 MATURESTAR 1 100.00 1 100.00 0 0 23
---------- ---------- ----------
1 1 0
(100.00) (0.00)
((( SUMMARY )))
-CAT- -REST- -ACT- -TOTAL- -TOTAL%-
---------- ---------- ---------- ---------- ----------
MATURE 15 13 28 96.55%
MATURESTAR 1 0 1 3.45%
---------- ---------- ----------
16 13 29
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